BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20930.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489001 jgi|Araly1|489001|fgenesh2_kg.6__2135__AT5G20930.1 3845 0.0
> Ahg489001 jgi|Araly1|489001|fgenesh2_kg.6__2135__AT5G20930.1
Length=2534
Score = 3845 bits (2082), Expect = 0.0
Identities = 2369/2499 (95%), Gaps = 53/2499 (2%)
Strand=Plus/Plus
Query 1 TAAAGAGAACTTTGTGTTGA--CCTCTCTTTCCCTCCTAATTCCTTAGGGTTCCTCGATT 58
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAAAGAGAACTTTGTGTTGACCCCTCTCTTTCCCTCCTAATTCCTTAGGGTTCCTCGAAT 60
Query 59 TTTCTTTTTCACCGAAACAAAAACCTTATTCCTCCTTCTCTTTCTCTGTCTATCTTTCTC 118
|||||||||||||||||| | | | | || | |||| ||||||||||||
Sbjct 61 TTTCTTTTTCACCGAAAC----A-C--A-----AC--CT-TGTCTC--TCTATCTTTCTC 103
Query 119 TGTACGTTTTATTCACTTTCCTCCACGTGGA-TTTGCATAAAAGCATGAAAATTTGTTGA 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 104 TGTACGTTTTATTCACTTTCCTCCACGTGGATTTTGCATAAAAGCATGAAAATTTGTTGA 163
Query 178 TGGGTTTCTCTTCGACATCCAGATTCTAGCTTCCAATTCCGTAATTCTCCGTTAAAAAAC 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 164 TGGGTTTCTCTTCGACATCCAGATTCTAGCTTCCAATTCCGTAA---------AAAAAAC 214
Query 238 CCTAATTTCTCGAATTTACTCTGATCTGTGTAG-A-AATTAGGGAGTGAAGTGTCCGCAA 295
|||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 215 CCTAATTTTTCGAATTTACTCTGATCTGGGTAGAAGAATTAGGGAGTGAAGTGTCCGCAA 274
Query 296 GTGTTTGGCAATGTCGGATGACATGGTTTTGCATTTCTCCTCGAATTCTTCTAATCAGTC 355
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 275 GTGTTTGGCAATGTCGGATGACATGGTGATGCATTTCTCCTCGAATTCTTCCAATCAGTC 334
Query 356 GGATCACTCTTTACCCGACAAAATCGCCAAGCTTGAGGCCCGCTTGACTGGTAAGACCCC 415
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GGATCACTCTTTGCCCGACAAAATCGCCAAGCTTGAGGCCCGCTTGACTGGTAAGACCCC 394
Query 416 TTCCTCGGCCAAGCCACCACAACAACAACAACAGCAGCAGCAGCAGGTCTCTCTCTGGTC 475
||||||||| ||| | | || | ||||| ||||||||||||||||||| |||||||
Sbjct 395 TTCCTCGGCGAAG----C-C-AC--C-ACAACTGCAGCAGCAGCAGGTCTCTGTCTGGTC 445
Query 476 ATCTG---CTTCTGCCGCTGTCAAAGTCGTCACTTCCACACCGCCGGGATTGTCCGAAAC 532
||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 446 ATCTGCTTCTTCTGCCGCTGTCAAAGTCGTGACTTCCACACCCCCGGGATTGTCGGAAAC 505
Query 533 CTCTATCAGTGATTCAGACGACGAGAATACTGGAGATTTCCTAATCCGAGCAAATACAAA 592
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 506 CTCTATCAGTGATTCCGATGACGAGAATACTGGAGATTTCCTAATCCGAGCGAATACCAA 565
Query 593 AAAGCGCCAGAAAGTTCAAGAATCTAACAACTTCAGTGTTGTTGATCATGTTGAGCCACA 652
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 566 AAAGCGACAGAAAGTTCAAGAGTCTAACAACTTCAGTGTTGTTGATCATGTGGAGCCCCA 625
Query 653 AGAGGCAGCATATGATGGAAGGAAAAATGATGCTGAGTCCAAGACAGGCCTTGATGTAAG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 AGAGGCAGCATATGATGGAAGGAAAAATGATGCTGAGTCCAAGACAGGCCTTGATGTAAG 685
Query 713 TAAGAAGAAACAAGGTCGAGGTCGGGCTTCGTCAACAGGTAGAGGGCGTGGTTCTAAAAC 772
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 686 TAAGAAGAAACAAGGTCGAGGTCGGGCTTCCTCAACTGGTAGAGGGCGTGGTTCTAAAAC 745
Query 773 TAATAACGATGTGACAAAATCTCAGTTTGTGGTTGCACCAGTATCAGCTGCCAGTCAACT 832
||||||||| |||||||||||||||||| ||| |||||||||||||||||| | |||||
Sbjct 746 TAATAACGAAGTGACAAAATCTCAGTTTTTGGGTGCACCAGTATCAGCTGCAAATCAACA 805
Query 833 GGATGCCTCTGATCAAAAGGATTTTAGGCCTGATGGACAGCTCAGGAATGGTGAATGCTC 892
||||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 806 GGATGTCTCTGAGCAAAAGGATTTTAGGCCTGATGGACAACTTAGGAATGGTGAATGCTC 865
Query 893 TCTCCAGGATGAAGACTTAAAATCTTTGCGTGCAAAAATCGCTATGCTGGAGGAGGAATT 952
|||||| ||||||||||| | |||||||||||||||||||||| |||| |||||||||||
Sbjct 866 TCTCCATGATGAAGACTTGACATCTTTGCGTGCAAAAATCGCTGTGCTAGAGGAGGAATT 925
Query 953 GCGTAAATCTCGACAAGATTCTTCTGAGTATCACCACCTTGTCAGGAATCTTGAGAATGA 1012
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 926 GCGTAAATCTCGACAAGATTCTTCTGAGTATCACCACCTTGTCAGGAAGCTTGAGAATGA 985
Query 1013 GGTAAAAGATCTGAAAGATCAGGAACAACAAGGGAAGCAAAAGACAACTAAAGTAATCTC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GGTAAAAGATCTGAAAGATCAGGAACAACAAGGGAAGCAAAAGACAACTAAAGTAATCTC 1045
Query 1073 GGACCTTCTCATATCTGTTTCCAAAACTGAGAGACAAGAAGCAAGAACGAAAGTCAGAAA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1046 TGACCTTCTCATATCTGTTTCCAAAACTGAGAGACAAGAAGCAAGAACGAAAGTCAGACA 1105
Query 1133 TGAATCTTTGCGATTAGGCAGTGTTGGTGTTCTCAGGACAGGAACGATCATAGCTGAGAC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TGAATCTTTGCGATTAGGCAGTGTTGGTGTTCTCAGGACAGGAACGATCATAGCTGAGAC 1165
Query 1193 ATGGGAGGACGGACAAATGTTGAAAGATCTGAATGCTCAACTTAGACAATTGCTGGAAAC 1252
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 ATGGGAGGATGGACAAATGTTGAAAGATCTGAATGCTCAACTTAGACAATTGCTGGAAAC 1225
Query 1253 CAAGGAGGCTATTGAGAGACAAAGAAAGTTACTTAAGAAACGACAAAA---T-G-GT-GA 1306
|||||||||||||||||||||||||||||| ||||||||||||||||| | | || ||
Sbjct 1226 CAAGGAGGCTATTGAGAGACAAAGAAAGTTCCTTAAGAAACGACAAAATGGTGGTGTAGA 1285
Query 1307 TAAGAATGACGGAACCGACACAGAATCAGGAGCACAGGAGGAAGATATCATCCCTGACGA 1366
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1286 TAAGAATGACGGAACTGACACAGAATCAGGAGCACAAGAGGAAGATATCATCCCTGACGA 1345
Query 1367 GGTTTACAAGTCTCGTCTTACTAGTATTAAGCGGGAAGAGGAAGCTGTTTTGCGTGAGAG 1426
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1346 GGTTTACAAGTCTCGTCTTGCTAGTATTAAGCGGGAAGAGGAAGTTGTTTTGCGTGAGAG 1405
Query 1427 AGAAAGGTACACATTAGAGAAGGGGCTACTTATGAGGGAGATGAAACGCATACGAGATGA 1486
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1406 AGAAAGGTACACATTGGAGAAGGGGCTGCTTATGAGGGAGATGAAACGCATACGAGATGA 1465
Query 1487 AGATGGTTCTCGTTTCAACCATTTCCCAGTTTTGAATAGCCGCTATGCTCTTCTAAATCT 1546
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1466 AGATGGTTCTCGTTTCAACAATTTCCCAGTTTTGAATAGCCGATATGCTCTTCTAAATCT 1525
Query 1547 TCTTGGTAAAGGCGGATTTAGTGAAGTCTATAAGGCATATGATTTGGTGGACCATAGATA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TCTTGGTAAAGGCGGATTTAGTGAAGTCTATAAGGCATATGATTTGGTGGACCATAGATA 1585
Query 1607 TGTTGCGTGCAAGCTTCATGGTTTAAATGCTCAGTGGAGTGAAGAAAAGAAGCAAAGTTA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TGTTGCGTGCAAGCTTCATGGTTTAAATGCTCAGTGGAGTGAAGAAAAGAAGCAAAGTTA 1645
Query 1667 CATCCGCCATGCCAACAGGGAATGTGAGATCCATAAAAGTCTTGTGCATCACCACATTGT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CATCCGCCATGCCAACAGGGAATGTGAGATCCATAAAAGTCTTGTGCATCACCACATTGT 1705
Query 1727 TCGGCTTTGGGATAAATTTCATATCGACATGCATACATTCTGCACCGTTCTGGAATATTG 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TCGGCTTTGGGATAAATTTCATATCGACATGCATACATTCTGCACCGTTCTGGAATATTG 1765
Query 1787 TAGTGGGAAAGACCTTGATGCTGTATTAAAGGCAACATCTAATCTTCCTGAGAAAGAAGC 1846
|||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1766 TAGTGGAAAAGACCTTGATGCTGTTTTAAAGGCTACACCTAATCTTCCTGAGAAAGAAGC 1825
Query 1847 AAGGATTATCATTGTGCAAATAGTTCAAGGCCTTGTATATCTGAACAAAAAGTCACAGAA 1906
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 GAGGATTATCATTGTGCAAATAGTTCAAGGCCTTGTATATCTGAACAAAAAGTCACAGAA 1885
Query 1907 GATAATCCACTATGATCTGAAGCCTGGTAATGTTCTCTTTGATGAGTTTGGAGTAGCAAA 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 GATAATCCACTATGATCTGAAGCCTGGTAATGTTCTCTTTGATGAGTTTGGAGTAGCAAA 1945
Query 1967 AGTAACTGATTTTGGTCTAAGCAAGATAGTGGAGGACAATGTTGGTTCTCAAGGAATGGA 2026
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 AGTGACTGATTTTGGTCTGAGCAAGATAGTGGAGGACAATGTTGGTTCTCAAGGAATGGA 2005
Query 2027 GCTTACATCACAGGGAGCTGGAACATACTGGTACTTGCCCCCAGAATGCTTTGAGCTTAA 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GCTTACATCACAGGGAGCTGGAACATACTGGTACTTGCCCCCAGAATGCTTTGAGCTTAA 2065
Query 2087 CAAAACTCCTATGATCTCATCAAAGGTTGATGTATGGTCAGTTGGTGTTCTGTTTTACCA 2146
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2066 CAAAACTCCTATGATCTCATCAAAGGTCGATGTATGGTCAGTTGGTGTTCTATTTTACCA 2125
Query 2147 AATGCTGTTTGGAAAGCGACCTTTTGGACATGACCAAAGCCAAGAACGGATACTAAGAGA 2206
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2126 AATGCTATTTGGAAAGCGACCTTTTGGACATGACCAAAGCCAAGAACGGATACTACGAGA 2185
Query 2207 AGACACAATCATTAAAGCCAAAAAGGTTGAGTTCCCAGTAACAAGACCTGCCATCTCAAA 2266
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2186 AGACACAATCATTAAAGCCAAAAAGGTTGAGTTCCCAGTAACAAGACCCGCTATCTCAAA 2245
Query 2267 TGAAGCGAAGGATTTGATTCGACGGTGTCTAACATATAACCAAGAAGATAGGCCGGATGT 2326
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2246 TGAAGCGAAGGATTTGATTCGACGGTGTCTAACATATAACCAGGCCGATAGGCCGGATGT 2305
Query 2327 TCTAACAATGGCACAGGATCCATATCTTGCCTACTCTAAGAAGTGAGATTGTGTAGTCTT 2386
|||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||
Sbjct 2306 TCTAACAATGGCACAGGATCCATATCTTTCATACTCTAAGAAATGAGAGTGTGTAGTCTT 2365
Query 2387 CAAAAACAAACCAGAGATGCTAAAAGACCAGATCCTAGAATAT-TTTTTGGTATAGCTTA 2445
|| ||||||||||||||| ||||| |||||||||||||||| | |||||||||||| |||
Sbjct 2366 CACAAACAAACCAGAGATACTAAAGGACCAGATCCTAGAAT-TCTTTTTGGTATAGATTA 2424
Query 2446 TAAAGTT-TCTGTTTTGTTTGTCTAAATATTTTATCTCC 2483
||||||| | |||||||||||||||||||||||||||||
Sbjct 2425 TAAAGTTAT-TGTTTTGTTTGTCTAAATATTTTATCTCC 2462
Score = 122 bits (66), Expect = 9e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2528 TGTCTTCCTTTTATTATGTAACATGTTATGTATATTCTTCATGTTTTATAATAGAAGAAA 2587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2463 TGTCTTCCTTTTATTATGTAACATGTTATGTATATTCTTCATGTTTTATAATAGAAGAGA 2522
Query 2588 GCTGAAAGTTGG 2599
| ||||||||||
Sbjct 2523 GATGAAAGTTGG 2534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5