BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20935.1

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489002 jgi|Araly1|489002|fgenesh2_kg.6__2136__AT5G20935.1         510    3e-144


> Ahg489002 jgi|Araly1|489002|fgenesh2_kg.6__2136__AT5G20935.1
Length=336

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 313/331 (95%), Gaps = 2/331 (1%)
 Strand=Plus/Plus

Query  15   AAGATGCAATATGGCATATGGCACAGTGGATCCTTCACGCAACGAGTCAGTGTGAGATGC  74
            ||||||||||||||| | ||| |||||||||||||||||| |||| ||||||||||||||
Sbjct  1    AAGATGCAATATGGCCTGTGGTACAGTGGATCCTTCACGCCACGAATCAGTGTGAGATGC  60

Query  75   TGTGAAATCGCAAACGAGGCTCCACGACCAAAATCGAAGCTCCAAGTAGGATCACCGATC  134
            |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct  61   TGTGAAATAGCAAACGAGCCTCCACGACCAAAATCGAAGCTCCAAGTCGGATCACCAATC  120

Query  135  ATCATCGTCGAAGCTCCC-AAAGTTATAAAAACGGCCGCTTCAATGCCTTGCCTTAGGGC  193
            |||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  ATCATCGTTGAAGC-CCCGAAAGTTATAAAAACGGCAGCTTCAATGCCTTGCCTTAGGGC  179

Query  194  CAACTCTGGCTTGGTCAAGCCTGGCGATGTTGGAAGAATCGTGTCGAGAAAACCAAAGGA  253
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  180  TAACTCTGGCTTGGTCAAGCCTGGCGATGTTGGAAGAATCGTGTCGAGAAAACCGAAGGA  239

Query  254  CTTGTGGGCAGTTAGACTCTCCATTGGAACATATCTTTTAGATGGTAAATATTTCAAAGC  313
            ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  240  CTTGTGGGCAGTTCGACTCTCCATTGGAACCTATCTATTAGATGGTAAATATTTCAAAGC  299

Query  314  TTTAGAGCTTGACGAAGGAGATAGTGATTGA  344
            |||||||||||||||||||||||||||||||
Sbjct  300  TTTAGAGCTTGACGAAGGAGATAGTGATTGA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15185924422


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5