BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20940.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489003 jgi|Araly1|489003|fgenesh2_kg.6__2137__AT5G20940.1 2926 0.0
> Ahg489003 jgi|Araly1|489003|fgenesh2_kg.6__2137__AT5G20940.1
Length=1963
Score = 2926 bits (1584), Expect = 0.0
Identities = 1833/1951 (94%), Gaps = 26/1951 (1%)
Strand=Plus/Plus
Query 1 AATAATCAGCTCTCGACTATTTTATTGAGAGTGAAAGAGAAGACAAAGATGGGGAGTTCA 60
||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||||||
Sbjct 1 AATAATCAGCTCTTGACTATGTTATTGAGAGTGAAGGAGAGGGCAAAGATGGGGAGTTCG 60
Query 61 AGTTACTTGCTACAAACGTTAGGCCTTCTGCTGCTCTGCTGTACCGTGGCAGCTAATAAA 120
||||||||| | || |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGTTACTTG-T---TAC--TAGGTCTTCTTCTGCTCTGCTGTACCGTGGCAGCTAATAAA 114
Query 121 GTACCACTCGCA-AACGCCAAGTATAAGGACCCAAAAGAGCCACTGGGAGTCAGGATCAA 179
| |||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 115 GAACCACTTG-AGAACGCCAAGTATAAGGACCCAAAAGAGCCATTGGGAGTCAGGATCAA 173
Query 180 GAACCTGATGAGCCATATGACCCTTGAAGAGAAAATCGGACAGATGGTTCAGGTGGAACG 239
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 174 GAACCTAATGAGCCATATGACCCTTGAAGAGAAAATCGGGCAGATGGTTCAGGTTGAACG 233
Query 240 TGTCAATGCCACAACCGAAGTCATGCAAAAGTACTTC--------G----TCGGGAGTGT 287
|||||||||||||||||||||||| |||| |||||| | | ||||||||
Sbjct 234 CGTCAATGCCACAACCGAAGTCATGAAAAAATACTTCGGAATTATGTTTTTAGGGAGTGT 293
Query 288 GTTTAGCGGAGGAGGGAGTGTGCCGAAGCCATATATCGGTCCTGAAGCTTGGGTGAACAT 347
|||||||| |||||||||||||||| ||||||| | ||||| ||||||||||||||||
Sbjct 294 ATTTAGCGGGGGAGGGAGTGTGCCGACGCCATATGCCAGTCCTAAAGCTTGGGTGAACAT 353
Query 348 GGTGAATGAGGTCCAAAAGAAAGCTCTTTCAACCCGCTTAGGTATTCCCATAATTTACGG 407
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 354 GGTGAATGAGATCCAAAAGAAAGCTCTTTCGACCCGCTTAGGTATTCCCATAATTTACGG 413
Query 408 GATCGATGCTGTTCATGGTCACAACACCGTGTACAACGCCACCATTTTCCCGCATAACGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 414 GATCGATGCTGTTCATGGTCACAACACCGTGTACAACGCCACCATTTTCCCACATAACAT 473
Query 468 AGGCCTCGGAGTCACCAGGGATCCTGGTCTTGTGAAGAGAATTGGTGAAGCAACTGCGCT 527
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 474 AGGCCTCGGAGTCACCAGGGATCCTGGCCTTGTGAAGAGAATTGGTGAAGCAACTGCGCT 533
Query 528 TGAAGTTAGAGCAACAGGAATCCAATATGTCTTTGCTCCATGCATTGCAGTGTGTAGGGA 587
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 TGAAGTTCGAGCAACAGGAATCCAATATGTCTTTGCTCCATGTATTGCAGTGTGTAGGGA 593
Query 588 CCCTAGATGGGGAAGATGCTATGAGAGCTATAGTGAGGATCACAAAATAGTTCAACAGAT 647
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 594 CCCTAGATGGGGAAGATGCTATGAGAGCTACAGTGAGGATCACAAAATCGTTCAACAGAT 653
Query 648 GACTGAGATCATACCTGGTTTGCAAGGTGACCTTCCCACCGGTCAAAAGGGTGTTCCTTT 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GACTGAGATCATACCTGGTTTGCAAGGTGACCTTCCCACCGGTCAAAAGGGTGTTCCTTA 713
Query 708 CGTCGCTGGGAAGACCAAAGTCGCAGCCTGTGCTAAACACTTCGTTGGAGATGGAGGTAC 767
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 714 CGTCGCTGGAAAGACCAAAGTTGCAGCCTGTGCTAAACACTTTGTTGGAGATGGAGGTAC 773
Query 768 ATTGAGAGGGATGAACGCGAACAACACGGTTATTAATTCAAATGGATTGCTGGGGATTCA 827
||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||
Sbjct 774 ATTGAGAGGGATGAACGCGAATAACACAGTTATTAATACAAATGGATTGCTGGGCATTCA 833
Query 828 CATGCCAGCTTATCACGATGCGGTAAACAAGGGCGTTGCAACAGTTATGGTATCCTACTC 887
||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 834 CATGCCAGCTTATTACGATGCGGTAAAAAAGGGCGTTGCGACAGTTATGGTGTCCTACTC 893
Query 888 GTCCATAAACGGGTTGAAAATGCATGCTAATAAGAAACTTATCACGGGTTTCCTCAAGAA 947
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 894 GTCCATAAACGGGTTGAAAATGCATGCCAATAAGAAACTTATCACGGATTTCCTCAAGAA 953
Query 948 CAAACTCAAGTTCAGGGGCATTGTCATCTCCGACTATTTAGGTGTTGATCAGATCAACAC 1007
||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 954 CAAGCTCAAGTTCAGGGGCATTGTCATCTCGGATTATCTAGGTGTTGATCAGATCAACAC 1013
Query 1008 ACCTCTTGGTGCTAATTATTCACACTCTGTGTATGCTGCTACCACTGCGGGACTCGATAT 1067
||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 1014 ACCTCTTGGTGCTAACTATTCACACTCTGTGTATGCCGCTATCACTGCTGGACTCGATAT 1073
Query 1068 GTTCATGGGCTCATCAAACTTGACCAAATTAATCGACGAGCTAACCAGTCAGGTGAAGCG 1127
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTTCATGGGTTCATCAAACTTGACCAAATTAATCGACGAGCTAACCAGTCAGGTGAAGCG 1133
Query 1128 AAAATTCATCCCGATGAGCAGAATCGACGATGCTGTAAAGAGAATCTTAAGAGTCAAATT 1187
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1134 AAAACTCATCCCGATGAGCAGAATCGACGATGCTGTGAAGAGAATCTTAAGAGTCAAATT 1193
Query 1188 CACAATGGGGCTCTTTGAGAATCCCATTGCTGATCATAGCTTGGCCAAGAAGCTCGGTAG 1247
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1194 CACAATGGGGCTCTTTGAGAATCCCATAGCTGATCATAGCTTGGCCAACCAGCTCGGTAG 1253
Query 1248 TAAGGAACACAGGGAACTGGCAAGGGAAGCAGTGAGGAAATCTCTCGTGTTGTTGAAGAA 1307
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1254 TAAGGAACACAGAGAACTGGCAAGGGAAGCAGTGAGGAAGTCTCTGGTGTTGTTGAAGAA 1313
Query 1308 TGGTGAAAACGCAGATAAGCCGTTGCTTCCTCTGCCAAAGAAAGCCAATAAGATCCTTGT 1367
|| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1314 CGGCGAAAATGCGGATAAGCCGTTGCTTCCTCTGCCAAAGAAAGCCAACAAGATCCTTGT 1373
Query 1368 CGCAGGAACACATGCTGATAACTTGGGATACCAATGTGGTGGCTGGACAATCACATGGCA 1427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGCAGGAACACATGCTGATAACTTGGGATACCAATGTGGTGGCTGGACAATCACATGGCA 1433
Query 1428 AGGCCTTAATGGCAACAATCTCACCATTGGAACAACGATCCTCGCCGCAGTGAAGAAGAC 1487
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1434 AGGCCTTAATGGCAACAATCTCACCATTGGAACAACGATCCTCACCGCAGTGAAGAACAC 1493
Query 1488 GGTGGATCCGAAGACGCAAGTTATCTACAATCAAAACCCCGACACCAATTTCGTCAAGGC 1547
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1494 GGTGGATCCGAAAACGCAAGTTATCTACAATCAAAACCCCGACACCAATTTCGTCAAGTC 1553
Query 1548 CGGTGACTTCGATTACGCAATCGTGGCCGTCGGAGAGAAACCGTACGCGGAGGGATTCGG 1607
||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1554 CGGCGACTTCGATTACTCAATCGTGGTCATCGGAGAGAAACCGTACGCGGAGGGATTCGG 1613
Query 1608 AGACAGTACGAACTTAACCATATCGGAACCAGGTCCGAGCACGATCGGGAACGTGTGCGC 1667
|||||| ||||||||||||||||| ||||||||| ||||||| |||| |||||||||||
Sbjct 1614 AGACAGCACGAACTTAACCATATCCGAACCAGGTACGAGCACAATCGAAAACGTGTGCGC 1673
Query 1668 ATCGGTGAAATGTGTGGTGGTGGTTGTATCGGGACGTCCGGTGGTGATGCAG----A--T 1721
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1674 ATCGGTGAAATGTGTGGTGGTGGTTGTATCGGGACGTCCGGTGGTGATGCAGCCGTACAT 1733
Query 1722 TTCGAACATCGATGCTCTAGTGGCGGCGTGGCTTCCGGGAACGGAAGGTCAAGGAGTGGC 1781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1734 TTCGAACATCGATGCTCTAGTGGCGGCGTGGCTACCGGGAACGGAAGGTCAAGGAGTGGC 1793
Query 1782 TGATGTTTTGTTCGGAGATTATGGATTCACCGGGAAATTGGCTCGGACGTGGTTTAAGAC 1841
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1794 TGATGTTTTGTTCGGAGATTACGGATTCACCGGGAAATTGGCTCGGACGTGGTTCAAGAC 1853
Query 1842 AGTGGATCAGTTGCCGATGAACGTTGGTGACCCGCATTACGACCCGTTGTACCCGTTTGG 1901
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1854 AGTGGATCAGTTGCCGATGAACGTTGGTGACCCGCATTATGACCCGTTGTACCCGTTTGG 1913
Query 1902 ATTCGGGTTGATCACTAAACCAAATTAACGG 1932
|||||||||| ||||||| ||||||||||||
Sbjct 1914 ATTCGGGTTGGTCACTAACCCAAATTAACGG 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5