BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20990.1
Length=2354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489011 jgi|Araly1|489011|fgenesh2_kg.6__2145__AT5G20990.1 3411 0.0
> Ahg489011 jgi|Araly1|489011|fgenesh2_kg.6__2145__AT5G20990.1
Length=2164
Score = 3411 bits (1847), Expect = 0.0
Identities = 2079/2188 (95%), Gaps = 28/2188 (1%)
Strand=Plus/Plus
Query 17 CATATCTAATCCGATTGCTAAACAAGGCCATCGTCTCTCTCTATCAATCAGCGACGGAAA 76
|||||||||||||||||| |||||||||||||||||||||||||||| || | | | ||
Sbjct 1 CATATCTAATCCGATTGCCAAACAAGGCCATCGTCTCTCTCTATCAAACA--G-C-G-AA 55
Query 77 TAAATGGAAGGTCAAGGTTGTTGTGGCGGCGGCGGCGGAAAGACGGAGATGATACCGACG 136
| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 56 TGGATGG-CCATGAAGGTTGTTGTAGCGGCGGCGGCGGAAAGACGGAGATGATACCGACG 114
Query 137 GAGGAAGCTCTGAGAATAGTATTCGGCGTCTCTAAGCGTCTGCCTCCGGTAATCGTATCG 196
|||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 115 GAGGAAGCTCTGAGGATAGTACTCGGCGTCTCTAAGCGTCTTCCTCCGGTAATCGTATCG 174
Query 197 CTGTATGAAGCACTTGGGAAAGTGTTGGCGGAAGATATTCGAGCTCCTGATCCTTTACCT 256
||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 175 CTGCATGAAGCACTTGGGAAAGTGTTGGCGGAGGATATTCGAGCTCCTGATCCTCTGCCT 234
Query 257 CCATATCCTGCTTCCGTCAAGGATGGGTACGCAGTTGTTGCTTCAGATGGTCCTGGAGAA 316
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 235 CCATATCCTGCTTCCGTTAAGGATGGGTACGCTGTTGTTGCTTCAGATGGTCCTGGAGAA 294
Query 317 TATCCGGTGATTACTGAATCAAGAGCTGGGAATGATGGTTTGGGTGTGACTGTTACTCCT 376
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 TATCCGGTGATTACTGAATCAAGAGCTGGGAATGATGGACTGGGTGTGACTGTTACTCCT 354
Query 377 GGAACTGTGGCTTATGTGACAACTGGTGGACCTATACCTGATGGTGCGGACGCAGTTGTC 436
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 355 GGAACTGTGGCTTATGTAACTACTGGTGGACCTATACCTGATGGTGCAGATGCAGTTGTC 414
Query 437 CAAGTTGAGGACACTAAAGTAATTGGAGACGTCTCAACTGAATCAAAAAGAGTAAAAATA 496
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 CAAGTTGAGGACACTAAAGTAATTGGAGACGTCTCCACTGAATCAAAAAGAGTAAAAATA 474
Query 497 CTGATTCAAACCAAGAAAGGCACCGATATCCGTAGAGTGGGTTGTGATATTGAGAAAGAT 556
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 475 CTGATTCAAACCAAGAAAGGCACTGACATCCGTAGAGTGGGTTGTGATATTGAGAAAGAT 534
Query 557 GCAACTGTACTAACAACTGGAGAAAGAATTGGTGCCTCAGAAATCGGCTTGCTAGCAACC 616
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GCAACTGTACTAAAAACTGGAGAAAGAATTGGTGCCTCAGAAATTGGCTTGCTAGCAACC 594
Query 617 GCAGGAGTAACCATGGTGAAGGTATATCCTATGCCAATAGTTGCTATTCTCTCTACTGGA 676
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 595 GCAGGAGTAACAATGGTGAAGGTATATCCTATGCCAACAGTTGCTATTCTCTCTACTGGG 654
Query 677 GATGAACTTGTGGAGCCGACAGCTGGGACTTTAGGTCGTGGGCAGATTAGGGACTCAAAT 736
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 GACGAACTTGTCGAGCCGACAGCTGGGACTTTAGGTCGTGGGCAGATTAGAGACTCAAAT 714
Query 737 CGAGCAATGTTAGTGGCAGCAGTGATGCAGCAGCAATGCAAAGTTGTTGACCTTGGAATT 796
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 CGAGCAATGTTAGTGGCAGCAGTGATGCAGCACCAATGCAAAGTTGTTGACCTTGGAATT 774
Query 797 GTTAGAGATGATAGAAAAGAACTTGAGAAG-GTTTTGGACGAGGCCGTATCCTCTGGAGT 855
||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 775 GTTAGAGATGATAAAAAAGAACTTGAG-AGAGTTTTGGACGAGGCCATATCCTCTGGAGT 833
Query 856 TGATATTATTTTAACTTCTGGTGGTGTTTCAATGGGAGACAGGGATTTCGTCAAGCCATT 915
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 834 TGATATTATTTTAACTTCTGGTGGTGTCTCAATGGGAGACAGGGATTTTGTCAAGCCATT 893
Query 916 ACTCGAAGAGAAAGGGAAAGTATATTTCAGCAAGGTATTGATGAAACCCGGGAAACCTTT 975
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 894 GCTCGAAGAGAAAGGGAAAGTATATTTCAGCAAGGTATTAATGAAGCCCGGGAAACCTTT 953
Query 976 GACCTTCGCCGAGATTAGAGCAAAACCAACTGAAAGTATGCTGGGGAAAACAGTCCTTGC 1035
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GACGTTCGCCGAGATTAGTGCAAAACCAACTGAAAGTATGCTGGGGAAAACAGTCCTTGC 1013
Query 1036 ATTTGGATTACCTGGAAATCCTGTGAGCTGTTTGGTTTGTTTCAATATCTTTGTTGTGCC 1095
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATTTGGATTACCAGGAAATCCTGTGAGCTGTTTGGTTTGTTTCAATATCTTTGTTGTGCC 1073
Query 1096 TACAATCCGCCAGCTTGCAGGATGGACAAGCCCCCATCCACTGAGAGTGCGA-CTTCGAC 1154
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1074 TACAATCCGCCAGCTTGCAGGATGGACAAGCCCCCATCCACTGAGAGTGCGAGC-TCGAC 1132
Query 1155 TTCAGGAGCCCATCAAGTCTGATCCCATCCGCCCCGAGTTTCATCGGGCCATAATCAAAT 1214
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1133 TTCAGGAGCCCATAAAGTCCGATCCCATCCGTCCCGAGTTTCATCGGGCCATAATCAAAT 1192
Query 1215 GGAAAGACAACGATGGATCAGGGACTCCCGGATTTGTTGCTGAGAGCACTGGACATCAGA 1274
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1193 GGAAAGACAACGATGGATCAGGAACTCCCGGATTTGTTGCTGAGAGCACTGGACATCAGA 1252
Query 1275 TGAGCAGTAGGCTTTTAAGTATGAGGTCGGCTAATGCTTTGTTGGAGTTGCCTGCTACGG 1334
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1253 TGAGCAGTCGGCTTTTAAGTATGAGATCGGCTAATGCTTTGTTGGAGTTGCCTGCTACGA 1312
Query 1335 GAAATGTGCTTTCTGCTGGAAGTTCTGTATCAGCTATAATTGTTTCTGATATTAGTGCCT 1394
| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 1313 GCAATGTACTTTCTGCTGGAACTTCTGTATCAGCTGTAATTGTTTCTGATATTAGTGGCT 1372
Query 1395 TTTCAATAGACAAGAAAGCCTCATTATCAGAACCAGGCTCTATTCGGAAAGAAAAGAAGT 1454
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1373 TTCCAATAGACAAGAAAGCCTCATTATCAGAACCAGGATCTATTCGGAAAGAAAAAAAGT 1432
Query 1455 ACGATGAAGTACCTGGGCCTGAGTATAAAGTGGCTATTCTTACCGTCAGTGATACTGTCT 1514
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ACGATGAAGAACCTGGGCCTGAGTATAAAGTGGCTATTCTTACCGTCAGTGATACTGTCT 1492
Query 1515 CAGCTGGGGCTGGACCTGATCGAAGTGGGCCCAGAGCTGTGTCAGTAGTTGATTCCTCGT 1574
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1493 CAGCTGGGGCTGGACCTGATCGAAGTGGGCCCAGAGCTGTGTCAGTGGTTGATTCCTCGT 1552
Query 1575 CTGAAAAACTGGGGGGAGCTAAGGTAGTTGCAACAGCTGTTGTCCCCGATGAAGTGGAAA 1634
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CTGAAAAACTGGGAGGAGCTAAGGTAGTTGCAACAGCTGTTGTCCCCGATGAAGTGGAAA 1612
Query 1635 GAATAAAAGACATTCTTCAGAAATGGAGCGATGTTGACGAAATGGATCTCATTCTTACAC 1694
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1613 GAATCAAAGACATTCTCCAGAAATGGAGTGATGTTGACGAAATGGATCTCATTCTTACAC 1672
Query 1695 TTGGTGGTACTGGCTTCACTCCAAGAGATGTAACACCTGAAGCAACGAAAAAGGTGATCG 1754
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1673 TTGGTGGTACTGGCTTCACTCCGAGAGATGTAACACCTGAAGCAACGAAAAAGGTGATCG 1732
Query 1755 AGAGAGAAACACCCGGTCTCCTCTTTGTTATGATGCAAGAGAGCTTAAAGATCACTCCAT 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1733 AGAGAGAAACACCCGGTCTCCTCTTTGTTATGATGCAAGAGAGCTTAAAGATCACGCCAT 1792
Query 1815 TTGCGATGCTCTCGCGCTCTGCGGCAGGAATTAGAGGCTCAACATTGATAATCAACATGC 1874
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1793 TTGCGATGCTCTCACGCTCTGCAGCAGGAATTAGAGGCTCAACACTGATAATCAACATGC 1852
Query 1875 CTGGAAACCCAAACGCAGTGGCCGAGTGTATGGAGGCTCTGTTACCTGCATTGAAACACG 1934
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1853 CTGGAAACCCAAACGCAGTGGCCGAGTGTATGGAGGCTCTGTTACCAGCATTGAAGCACG 1912
Query 1935 CACTGAAGCAGATCAAAGGAGACAAGAGAGAGAAACATCCGAAGCACATACCTCACGCAG 1994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 CACTGAAGCAGATCAAAGGAGACAAGAGAGAGAAACATCCGAAGCACATACCTCACGCAG 1972
Query 1995 AAGCCACC-CTACCGACTGATACATGGGACCAAAGCTATAAGTCAGCCTATGAGACGGGA 2053
||||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1973 AAGCCTCCAC-ACCGACTGATACATGGGACCAAAGCTATAAGTCGGCCTATGAGACGGGA 2031
Query 2054 GAGAAGAAAGAAGAGGCTGGATGTTCTTGTACTCACTAAAACTCTCCAGCTTCTCCACAA 2113
|| |||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 2032 GAAAAGAAAGAGGAGGCTGGATGTTCTTGTACTCACTAAAACTA---A--------AC-- 2078
Query 2114 AGCCCCAAGTGATTTTGCTCTGCACTGTTGTGACTGTAAAACTTTTGACAAGTTTTGTGT 2173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 --CCCCAAGTGATTTTGCTCTGCACTGTTGTGACTGTAAAACTTTTGACAAGTTTTGTGG 2136
Query 2174 -TTGCTGAGTTAGTTACACGAAACCCAA 2200
|| ||||||||||||||||||||||||
Sbjct 2137 CTTACTGAGTTAGTTACACGAAACCCAA 2164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88674090360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5