BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21010.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941655 jgi|Araly1|941655|scaffold_602199.1 1986 0.0
Ahg936962 jgi|Araly1|936962|scaffold_501153.1 965 0.0
> Ahg941655 jgi|Araly1|941655|scaffold_602199.1
Length=1273
Score = 1986 bits (1075), Expect = 0.0
Identities = 1197/1257 (95%), Gaps = 3/1257 (0%)
Strand=Plus/Plus
Query 38 CGAATTTCAAACGGAGATGTCAGAATCAGTGATTCAGGGATCGAATCCGGATCGGGTTTT 97
||||| || || ||||||||| | |||| |||||| ||||||||||||||||||||||||
Sbjct 6 CGAATCTC-AAGGGAGATGTCTGGATCATTGATTCCGGGATCGAATCCGGATCGGGTTTT 64
Query 98 ATCTCCGACGAGCTCGAAATCAGTGACGCAGACGGTGAACGGGTCGCATCAATTCGTGAT 157
|||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 65 ATCTCCGACGAGTTCAAAATCGGTGACGCAGACGGTGAACGGGTCACATCAATTCGTGAT 124
Query 158 TCAAGGATACAGCTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 217
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ACAAGGATACAGTTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTT 184
Query 218 CTCCGTCGGAGGTTATCAGTGGGGGATCTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 277
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185 TTCCGTCGGAGGTTATCAGTGGGGGATTTTCTTCTACCCGGACGGTAAGAATCCGGAGGA 244
Query 278 TAATTCGTCGTACGTCTCTGTTTTTATCGCATTGGCCAGTGAAGGAACCGAAGTTAGGGC 337
||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 245 TAACTCGTCGTACGTCTCTGTTTTCATCGCATTGGCGAGTGAAGGAACTGAAGTTAGGGC 304
Query 338 GCTTTTCGAGCTAGCTCTTGTTGACCAAAGTGGAAAGGGGAAACATAAGGTTCATAGCCA 397
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 GCTTTTTGAGCTAGCTCTTGTTGACCAAAGTGGAAAGGGGAAACACAAGGTTCATAGCCA 364
Query 398 TTTTGAGCGGTCACTCGATGGTGGCCCTTATACACTCAAATACAGAGGAAGCATGTGGGG 457
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 365 TTTTGAGCGGTCACTTGATGGTGGACCTTATACACTCAAATACAGAGGAAGCATGTGGGG 424
Query 458 ATACAAGCGTTTCTTCAGACGTTCCATTCTTGAGACATCTGACTACCTGAAAGACGATTG 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATACAAGCGTTTCTTCAGACGTTCCATTCTTGAGACATCTGACTACCTGAAAGACGATTG 484
Query 518 CTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACTCTGCCCACAGTTACA 577
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 CTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACAATGCCCACAGTTACA 544
Query 578 CTCTGTTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGAGTTCTACTGGATAGCAT 637
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 545 CTCTGTTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGTGTTCTACTGGATAGCAT 604
Query 638 GGAAGGTTCTGATATAACTTTTAACATTGCTGGCGAGAAGTTTCTAGCTCATAAACTAGT 697
||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 605 GGAAGGTTCTGATGTAACTTTTGACATTGCTGGTGAGAAGTTTCTAGCTCATAAACTAGT 664
Query 698 ACTGGCTGCTCGATCTCCATTTTTCAAGTCTAAGTTTTTCAGTGAGTTTGAAGCAAACAA 757
||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||
Sbjct 665 ACTGGCTGCTCGATCTCCATTTTTCAAATCTATGTTTTTCAGTGAGTTTGCTGCAGACAA 724
Query 758 TACAGAGGTTACTATTAACGATTTGGAACCTAAGGTTTTTAAGGCTTTGCTACAATTCAT 817
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TACAGAGGTTACTATTAATGATTTGGAACCTAAGGTTTTTAAGGCTTTGCTACAATTCAT 784
Query 818 GTACAAAGATTCTCTTCCGGAAGATGTGGAGCCTGCAACAGCTCATACATTTGAGCGCTT 877
||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 785 GTATAAAGATTCTCTTCCCGAAGATGTGGAGCCTGCAACAACTCATACATTTGAGCGCTT 844
Query 878 AAAGCTGTCAGAAATATACGAAACATTGATTGTAAAAGTTTTAGCAGCAGCCGACAAGTA 937
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 845 AAAGCTGTCAGAAATATACGAGACATTGATTGTAAAGGTTTTAGCAGCAGCAGACAAGTA 904
Query 938 CGACCTGATTAGGCTCAGGTTGTTGTGTGAATCCCACATCTGCAAAGGCGTATCAGTCAA 997
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 905 CGACCTGATTAGGCTCAGGTTGTTGTGTGAATCTCACATCTGCAAAGGCGTATCAATCAA 964
Query 998 ATCCGTCGCGAAGATCTTAGCGTTGGCTGACAGATATAATGCTAAGGAACTAAA-AGGCG 1056
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 965 ATCTGTCGCCAAGATCTTAGCGTTGGCCGACAGATATAATGCTAAGGAACTAAAGAA-CG 1023
Query 1057 TTTGCCTTAAGTTTACTGCCGAGAACCTAGCAGCTGTCCTGGAGACAGACGCTTACCAAC 1116
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1024 TTTGCCTTAAATTTACTGCCGAGAACCTAGCAGCTGTACTGGAGACAGACGCTTACCAAC 1083
Query 1117 AGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACG 1143
Query 1177 AGGAAGGTAGTAACAGTACTGGAGGAGCAAAGTCTCAGAGCGTGTGGGCCCAACTTTCTG 1236
||||||| ||||||| | |||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 1144 AGGAAGGCAGTAACACTTCTGGTGGAGCAAAATCTCAGAGTGTGTGGGCCAAACTTTCTG 1203
Query 1237 ACGGCGGGGGCGATACCACCAGCCGACATGTTAGACAACGAACCACCTAGAGCCTCA 1293
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1204 ACGGCGGTGGCGATACCACCAGCAGACATGTTAGACAACGAACCACCTAGAGCCTCA 1260
> Ahg936962 jgi|Araly1|936962|scaffold_501153.1
Length=1291
Score = 965 bits (522), Expect = 0.0
Identities = 1002/1230 (81%), Gaps = 48/1230 (4%)
Strand=Plus/Plus
Query 79 CGAATCCGGATCGGGTTTTATCTCCGACGAGCTCGAA-ATCAGTGACGCAGACGGTGAAC 137
||||||| ||||| | ||| || || ||||| || ||| |||||||||||| |||
Sbjct 67 CGAATCCAGATCGAATCGAATCACCAACAAGCTC-AAGATCGGTGACGCAGACGACAAAC 125
Query 138 GGGTCGCATCAATTCGTGATTCAAGGATACAGCTTAGCGAAAGGGATGGGTA-TAGGGAA 196
|| ||||| ||||||||||| ||||||||||| ||||| ||||| || || | |||||||
Sbjct 126 GGATCGCACCAATTCGTGATCCAAGGATACAGTTTAGCTAAAGGAATCGG-AGTAGGGAA 184
Query 197 GCACATAGCGAGTGATAATTTCTCCGTCGGAGGTTATCAGTGGGGGATCTTCT-TCTACC 255
|||||||| ||||||||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 185 ACACATAGCAAGTGATAATTTCTCCGTCGGAGGTTATCAATGGACTATCTT-TGTCTACC 243
Query 256 CGGACGGTAAGAATCCGGAGGATAATTCGTCGTACGTCTCTGTTTTTATCGCATTGGCCA 315
| || ||||| ||||| || ||||| || || ||||||||||| || |||| ||||| |
Sbjct 244 CAGATGGTAAAAATCCAGAAGATAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTA 303
Query 316 GTGAAGGAACCGAAGTTAGGGCGCTTTTCGAGCTAGCTCTTGTTGACCAAAGTGG-AAAG 374
||||||| || |||||||| |||||||| ||||| ||||||||||| |||||||| |||
Sbjct 304 GTGAAGGTACTGAAGTTAGAGCGCTTTTTGAGCTTGCTCTTGTTGATCAAAGTGGTAAA- 362
Query 375 GGGAAACATAAGGTTCATAGCCATTTTGAGCGGTCACTCGATGGTGGCCCTTATACACTC 434
||||| |||||||||||||||||||| || ||||| || |||||||| ||||| || ||
Sbjct 363 GGGAAGCATAAGGTTCATAGCCATTTCGATCGGTCGCTTGATGGTGGTCCTTACACGCTT 422
Query 435 AAATACAGAGGAAGCATGTGGGGATACAAGCGTTTCTTCAGACGTTCCATT-CTTGAGAC 493
||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 423 AAATATAGAGGAAGTATGTGGGGATACAAGCGTTTCTTCAGACGTTCC-TTGCTTGAGAC 481
Query 494 ATCTGACTACCTGAAAGACGATTGCTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTC 553
|||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 482 ATCTGACTACCTTAAAGACGATTGCTTGAAAATCAATTGTACAGTTGGAGTTGTCGTTTC 541
Query 554 AGAAATAC-TCTGCCCAC-AGTTACACTCTG-TTCACGTCCCTGATTCAGAACTTGGATC 610
|||||||| | ||||||| | |||| ||| | |||| ||||| || ||||||||||||||
Sbjct 542 AGAAATACAT-TGCCCACGA-TTACTCTC-GATTCATGTCCCAGACTCAGAACTTGGATC 598
Query 611 ACATTTTGGA--GTTCTACTGGATAGCATG-GAAGGTTCTGATATAACTTTTAACATTGC 667
|||||||||| ||| ||||||| | | |||||||| ||| | || ||| |||||||
Sbjct 599 ACATTTTGGAAAGTTG--CTGGATA-CTTTAGAAGGTTCAGATGTCACATTTGACATTGC 655
Query 668 TGGCGAGAAGTTTCTAGCTCATAAACTAGTACTGGCTGCTCGATCTCCA-TTTTTCA-AG 725
||| |||||||||| |||||||||| | || ||||||| ||||||| | ||||||| |
Sbjct 656 TGGTGAGAAGTTTCAAGCTCATAAATTGGTTTTGGCTGCACGATCTC-AGTTTTTCAGA- 713
Query 726 TCTAAGTTTTTCAGTGAGTTTGAAGCAAACAATA-CAGAGGTTA-CTATTAACGATTTGG 783
|| ||||||| || || ||||||||||| | | ||||| | | || | | ||||||
Sbjct 714 TCGAAGTTTTACAATGTCCCAGAAGCAAACAACAAC-GAGGT-AGCGATCAGCAATTTGG 771
Query 784 AACCTAAGGTTTTTAAGGCTTTGCTACAATTCATGTACAAAGATTCTCTTCC-GGAAGAT 842
||||||||||||| ||||| ||| |||| |||||||| ||||||||||| || ||| |||
Sbjct 772 AACCTAAGGTTTTCAAGGCCTTGTTACACTTCATGTATAAAGATTCTCTCCCAGGA-GAT 830
Query 843 GTGGAGCCTGCAACAGCTCATACATTTGAGCGCTTAAAGCTGTCAGAAATATACGAAACA 902
||||| || | ||| |||||| ||||||| | |||| |||||| |||||| | || |||
Sbjct 831 GTGGAACCAGTAACGGCTCATTCATTTGACCTATTAAGGCTGTCCGAAATAGATGATACA 890
Query 903 TTGATTGTAAAAGTTT-TAGCAGCAGCCGACAA-GTACGACCTGATTAGGCTCAGGTTGT 960
|||||||||| | || | ||||| || || || |||| | |||| ||||||||| || |
Sbjct 891 CTGATTGTAAA-GCTTCTGGCAGCTGCGGA-AATGTACAATCTGAGTAGGCTCAGATTAT 948
Query 961 TGTGTGAATCCCACATCTGCAAAGGCGTATC-AGTCAAATCCGTCGCGAAGATCTTAGCG 1019
|||||||||| ||||||||||||| |||||| | ||| ||||| | |||||||||||
Sbjct 949 TGTGTGAATCTCACATCTGCAAAGCCGTATCTA-TCAGCTCCGTATCCAAGATCTTAGCT 1007
Query 1020 TTGGCTGACAGATATAATGCTAAG-GAACTAAAAGGCGTTTGCCTTAAGTTTACTGCCGA 1078
|| | |||| ||||||||| || ||||||||| |||| | ||| || || ||||| ||
Sbjct 1008 TTATCCGACAAATATAATGC-AACTGAACTAAAAAGCGTATCCCTAAAATTCACTGCAGA 1066
Query 1079 GAACCTAGCAGCTGTCCTGGAGACAGACGCTTACCAACAGATGAAGGATGAATGTGTGAC 1138
|||||||||||||| ||| ||||| | ||||| || | |||||||||| | | |
Sbjct 1067 AAACCTAGCAGCTGTTCTGCAGACAAAAGCTTATGAAGATCTGAAGGATGACTATCCAAA 1126
Query 1139 CCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACGAGGAAGGTAGTAACAGTACTGG 1198
||||||||| ||||| || ||||||||||||||| | || ||| |||| ||| | ||
Sbjct 1127 CCTCCAGTCTGAGCTACTAAAGGCGGTGGCTGGTTATGACGAAACAAGTAGCAG--C-GG 1183
Query 1199 AGGAGCAAAGTCTCAGAGCGTGTGGGCCCAACTTTCTGACGGCGGGGGCGATACCACCAG 1258
||||| |||||||||||| || ||||||||||| |||||||| || | || ||| |||
Sbjct 1184 AGGAGGAAAGTCTCAGAGTGTTTGGGCCCAACTCTCTGACGGTGGTGA-GA--CCAGCAG 1240
Query 1259 CCGAC-ATGTTAGACAACGAACCACCTAGA 1287
|||| | || || || |||||||| ||||
Sbjct 1241 CCGAAGA-GTCAGGCAGCGAACCACTTAGA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5