BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21030.1 Length=2553 Score E Sequences producing significant alignments: (Bits) Value Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704 3347 0.0 Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1 977 0.0 > Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704 Length=2547 Score = 3347 bits (1812), Expect = 0.0 Identities = 2328/2569 (91%), Gaps = 68/2569 (3%) Strand=Plus/Plus Query 31 ATGGAACGTGAACCTTTGAAGAGCAAGAGTAGT-CTTCTTCCAATGACTCGCCGTGGCAA 89 |||||||| ||| || |||||| |||||||| | |||||||||||| |||| |||||||| Sbjct 1 ATGGAACGGGAATCTGTGAAGAACAAGAGTA-TACTTCTTCCAATGGCTCGGCGTGGCAA 59 Query 90 CGGTTCCAAAGGA-CAGAAGATTCTTCTGCTCACTAACCACTTCAGAGTCAACTTCAGAA 148 ||||||||||||| | |||||||| ||| |||||||||||||| ||||| |||||||| Sbjct 60 CGGTTCCAAAGGATC-GAAGATTCATCTTCTCACTAACCACTTTAGAGTTAACTTCAGTC 118 Query 149 AACCAAACAGTCATAATTTCTTCCATTACAGCGTTACTATCACATATGAAGATGGTAGTC 208 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 119 AACCAAACAGTCATGATTTCTTCCATTACAGCGTTGCTATCACATATGAAGATGGTAGTC 178 Query 209 CACTTTTAGCCAAAGGTTTTGGCAGAAAGATTCTTGAAAAAGTTCAACAGACTTGTCAAG 268 || || |||||| ||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 179 CAGTTGAAGCCAAGGGTATTGGTAGAAAGATTCTTGAAAAAGTTCAACAGACTTATCAAA 238 Query 269 CTGATTTGGGTTGCAAACATTTTGCTTATGATGGCGACAAGAATCTTTAT-ACTGTTGGT 327 |||||||||||| |||||| ||||||||||| |||||||||||||||| | |||| ||| Sbjct 239 CTGATTTGGGTTTCAAACACTTTGCTTATGACGGCGACAAGAATCTTT-TCACTGCCGGT 297 Query 328 CCTCTTCCTAGATCCAGTCTAGACTTCTCTGTTGTTCTTGAA-ACCGCGCCTTCTAGGAG 386 |||||||| |||||| |||||| |||||||||||||||||| | | | |||||||||| Sbjct 298 CCTCTTCCCGGATCCAATCTAGAATTCTCTGTTGTTCTTGAAGA-CATGTCTTCTAGGAG 356 Query 387 AAACGCAGACAAAAGACTAAAGCTTCCTCACCAATCCAAGAAATTCAATGTTGCAATCCT 446 ||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 357 AAATGCAGGCAAAAGACTAAGGCTTTCTCACCAATCCAAGAAATTCAATGTTGCAATCAG 416 Query 447 TTTTGCGCCTCCAGAAATCCCAATGGAAGCTATTGCAAATGCTCTTCAAGGAAAGAAAAC 506 ||| | || || ||||||| ||| ||||||||||||||||||||||||||||| |||| Sbjct 417 CTTT--G-CTGCAAAAATCCCTATGAAAGCTATTGCAAATGCTCTTCAAGGAAAGGAAAC 473 Query 507 TAAA-CATCTTCTAGATGCTATCAGAGTGATGGACTG-TATTTTGAGCCAAAATGCAGCT 564 ||| ||| ||| ||||||||||||||||||||| || ||||||| |||||||||||||| Sbjct 474 -AAACCATTTTCAAGATGCTATCAGAGTGATGGA-TGTTATTTTGTGCCAAAATGCAGCT 531 Query 565 -AGACAAGGTTGCCTCCTAGTTCGGCAATCTTTCTTCCACAATGACGCAAAGTACTTTGC 623 || ||||||||||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 532 CGGA-AAGGTTGCCTCCTAGTTCGCCAATCTTTCTTCCACAATGATGCAAAGTACTTTAC 590 Query 624 GAATATCGGTGAAGGTGTAGATTGTTGCAAAGGATTTCATTCAAGCTTCAGAACTACTCA 683 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 591 GAATATCGGTGAAGGTGTTGATTGTTGCAAAGGATTCCATTCAAGCTTCAGAACTACTCA 650 Query 684 GGGAGGCTTGTCCCTCAATATTGATGTTTCGACTGCTATGATAGTAAAACCTGGTCCTGT 743 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 651 GGGAGGCTTGTCCCTCAATATTGATGTTTCGACTACGATGATAGTAAAACCTGGTCCTGT 710 Query 744 TGTTGATTTTCTTATTGCAAATCAAGGTGTGAACGATCCATTCTCTATTAACTGGAAAAA 803 ||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| Sbjct 711 TGTTGGTTTTCTTATTGGAAACCAAGGTGTGAAAGATCCATTCTCTATTAACTGGAAAAA 770 Query 804 GGCTAAAAATACTCTGAAAAATCTTAGAGTTAAAGTCCTCCCTTCAAATCAAGAATACAA 863 |||||||| |||||| || |||||||||||||||||| |||| ||||||||||||||||| Sbjct 771 GGCTAAAAGTACTCTCAAGAATCTTAGAGTTAAAGTCATCCCCTCAAATCAAGAATACAA 830 Query 864 GATAACCGGACTAAGTGGACTACACTGCAAAGATCAAACGTTTACTTGGAAGAAAAGGAA 923 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 831 GATAACCGGACTAAGTGGACTACACTGCAAAGATCAAATGTTTACTTGGAAGAAAAAGAA 890 Query 924 CCAAAACAGGGAATTTGAGGAGGTTGAGATTACAGTGTCCGATTACTTCACTAGGATCCG 983 ||||||| ||||| |||||||||||||||||||||||| ||||||||||| | ||||| Sbjct 891 CCAAAACGGGGAAGTTGAGGAGGTTGAGATTACAGTGTTTGATTACTTCACCAAAATCCG 950 Query 984 TGAAATCGAACTGCGTTACTCGGGTGGCTTACCTTGTATCAATGTTGGTAAGCCAAATCG 1043 ||| ||| |||||| ||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 951 TGACATCAAACTGCATTATTCAGGTGGCTTACCATGTATCAATGTTGGTAAGCCAAATCG 1010 Query 1044 TCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAACGCTATACTAAAGC 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 TCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAACGCTATACTAAAGC 1070 Query 1104 GCTAACCAAATTC-CAGAGGAGTAACCTTATCAAAGAATCAAGGCAGAATCCACAACAAA 1162 || || || || ||||||||||||||| |||||||||||||||| || || || |||| Sbjct 1071 TCTTAC-AAGTTTTCAGAGGAGTAACCTTGTCAAAGAATCAAGGCAAAACCCTCATCAAA 1129 Query 1163 GAATTGGT-GTGTTAACCAGAGCTCTCAAGA-CTAGTAATTATAATGATGACCCAATGTT 1220 |||| || |||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 1130 GAAT-GGAAGTGTTAACCAGAGCTCTCAAGAAC-AGTAATTATAGTGATGACCCAATGTT 1187 Query 1221 GCAAGAATGTGGTGTTAGGATTGGCTCTGACTTCACTCAAGTCGAAGGCCGCGTGTTACC 1280 |||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| Sbjct 1188 GCAAGAATGTGGTGTTAGAATAGGCTCTGACTTCACTCAAGTCGAAGGTCGCTTGTTACC 1247 Query 1281 AACACCAAAGCTTAAAGCTGGCAAAGAACAAGACATCTATCCTATTAATGGGAGTTGGAA 1340 |||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct 1248 AACACCCAAGCTTAAAGCTGGCAATGAACAAGACATCTATCCTAAGAATGGGCGTTGGAA 1307 Query 1341 CTTCAAGAACAAGCCAG---------C--CA-CAGTTACTAGATGGGCTGTTGTGAACTT 1388 |||||| |||||| || | || |||||||||||||||| ||||||||||| Sbjct 1308 CTTCAATAACAAGATAGTTTTTGAGTCAGCAACAGTTACTAGATGGGCCGTTGTGAACTT 1367 Query 1389 CTCTGCTCGCTGTGACCCGCAAAAGATTATT-GATGATTTGACCAGATGTGGAAAGATGA 1447 |||||||||||||||||||| |||||| || | |||||||| |||||||||||| |||| Sbjct 1368 CTCTGCTCGCTGTGACCCGCGCAAGATTGTTCG-TGATTTGATCAGATGTGGAAATATGA 1426 Query 1448 AAGGAATTAACGTAGATTCTCCATACCATGTCGTCTTTGAAGAAAATCCTCAGTTTAAGG 1507 ||||||||||||||||| |||||||| | || |||||||||||| ||||||||||||||| Sbjct 1427 AAGGAATTAACGTAGATCCTCCATACAAAGTTGTCTTTGAAGAAGATCCTCAGTTTAAGG 1486 Query 1508 ATGCCACT-GGTTCTGTAAGAGTTGATAAGATGTTTCAACATTTACAATCAATACTCGGC 1566 |||| || ||||||||||||||||| ||||||||| ||| |||| |||| | |||||| Sbjct 1487 ATGC-ACCAGGTTCTGTAAGAGTTGAAAAGATGTTTGAACGTTTAGAATCCACACTCGGT 1545 Query 1567 GAAGTTCCTCCAAAATTCCTTCTATGCATACTCGAAAAGAAAAACTCTGATGTTTATG-- 1624 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 GACGTTCCTCCAAATTTCCTTCTATGCATACTCGAAAAGAAAAACTCTGATGTTTATGGT 1605 Query 1625 ------AAAAA------TCTTGTTCAATGT-GGAATTGTGAAT--GT--ATTGTTCCTCC 1667 ||||| |||||||||| || |||||||||||| || |||| |||||| Sbjct 1606 CCTTGGAAAAAGAAAAATCTTGTTCAA-GTTGGAATTGTGAATCAGTGTATTGCTCCTCC 1664 Query 1668 TCAAAAC-TTAAATGATCAGTATCTCACAAATCTTCTACTAAAGATAAATGCCAAGCTTG 1726 ||||||| |||| |||||| |||||||||||| |||| || ||||||||||||||||||| Sbjct 1665 TCAAAACGTTAA-TGATCATTATCTCACAAATGTTCTCCTCAAGATAAATGCCAAGCTTG 1723 Query 1727 GTGGATTGAATTCAGTTTTGGATATGGAGCTGTCA-GGAACAATGCCTCTGGTAATGAGA 1785 |||||||||||||||| ||||||||||||| |||| || |||||||| ||||||||| | Sbjct 1724 GTGGATTGAATTCAGTGTTGGATATGGAGCGGTCACGGG-CAATGCCTTTGGTAATGAAA 1782 Query 1786 GTTCCTACCATCATTATTGGAATGGATGTATCTCATGGTTCTCCTGGACAGTCTGATCAT 1845 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1783 GTTCCTACCATCATTATTGGGATGGATGTATCTCATGGTTCTCCTGGACAGTCTGATG-T 1841 Query 1846 ATACCATCCATTGCCGCGGTTGTGAGCTCCAGAGAGTGGCCACTGATCTCAAAATACAGG 1905 | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1842 A--CCATCCATTGCCGCGGTTGTGAGCTCCAGAGAATGGCCACTGATCTCAAAATACAGG 1899 Query 1906 GCTTGTGTGCGTACACAGTCGCCTAAAGTTGAAATGATCGATAGCCTCTTTAAACCCGTC 1965 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 1900 GCTTGTGTGCGTACACAGTCGCGTAAAGTTGAAATGATCGATAACCTCTTTAAACCAGTC 1959 Query 1966 TCTGACAAAGATGATCAAGGTATCATGAGAGAGCTCTTGCTTGACTTTCACTCAAGTTCT 2025 ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1960 TCTGACAAAGATGATGAAGGTATCATGAGGGAGCTCTTGCTTGACTTTTACTCAAGTTCT 2019 Query 2026 GGAAAGAAACCGAATCACATTATCATTTTCAGGGATGGTGTCAGTGAATCTCAGTTTAAC 2085 | | ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 2020 GCAGTCAAACCCAATCACATTATTATTTTCAGGGATGGTGTGAGTGAATCTCAGTTTAAC 2079 Query 2086 CAAGTTCTTAATATTGAACTGGATCAGATGATGCAAATAAACCACCACACGAAGTTCTTC 2145 ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| Sbjct 2080 CAAGTTCTTAATATTGAACTGGATCAGATGAAGCAAAAAAACCACCACACCAAGTTCTTC 2139 Query 2146 CAAACC-GAAAGCCCTAATAATGTTCTTCCAGGAACAATAATTGACAGCAACATCTGTCA 2204 || ||| | | ||||| ||||||||| |||||||||||||||||| |||||||||||||| Sbjct 2140 CAGACCAGGA-GCCCTGATAATGTTCCTCCAGGAACAATAATTGATAGCAACATCTGTCA 2198 Query 2205 CCAACACAACAACGATTTCTATCTTTGTGCTCATGCTGGAAAGATTGGAACTACAAGGCC 2264 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2199 CCAACACAACAATGATTTCTATCTTTGTGCTCATGCTGGAATGATTGGAACTACAAGGCC 2258 Query 2265 AACACATTACCATGTGCTCTACGACGAGATTGGATTTGACACAGATCAACTCCAAGAACT 2324 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2259 AACACATTACCATGTGCTGTATGACGAGATTGGATTTGACACAGATCAACTCCAAGAACT 2318 Query 2325 TGTGCATTCACTATCCTATGTCTACCAGCGGAGCACAACTGCCATCTCTCTTGTTGCGCC 2384 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2319 TGTGCATTCCCTATCCTATGTCTACCAGCGGAGCACAACTGCAATCTCTCTTGTTGCGCC 2378 Query 2385 GATATGTTATGCTCATTTGGCGGCTGCACAGATGGCAACTGCAATGAAGTTTGAGGACAT 2444 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 2379 GATATGTTATGCTCATTTGGCGGCTGCACAGATGGGAACTGCGATGAAGTTTGAGGACAT 2438 Query 2445 GTCTGAGACTTCATCGAGCCACGGCGGGATCACCACAGCTGGAGCAGTCCCTGTGCCTCC 2504 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || Sbjct 2439 TTCTGAGACTTCATCGAGCCACGGCGGGATCACCATAGCTGGAGCAGTCTCTGTGCCACC 2498 Query 2505 CATGCCGAAGCTGAACACCAACGTTGCTAGTTCAATGTTCTTTTGCTGA 2553 ||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2499 CATGCCGAAGCTGAACACCAATGTTGCTAGTTCAATGTTCTTCTGCTGA 2547 > Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1 Length=2940 Score = 977 bits (529), Expect = 0.0 Identities = 1661/2178 (76%), Gaps = 195/2178 (9%) Strand=Plus/Plus Query 63 TCTTCTTCCAATGACTC-GCC--GTGGCAACGGTTCCAAAGGACAGAAGATTCTTCTGCT 119 |||||| |||||| ||| ||| | |||| |||||||||||||||||||||| ||| || Sbjct 224 TCTTCTCCCAATGGCTCGGCCTAGAGGCAGTGGTTCCAAAGGACAGAAGATTCCTCTTCT 283 Query 120 CACTAACCACTTCAGAGTCAACTTCAGA-AAACCAAACAGTCATAATTTCTTCCATTACA 178 ||||| ||||| ||||||| || | | ||| ||| | || | | ||||| ||||||| Sbjct 284 TACTAATCACTTTGGAGTCAAGTTTA-ACAAAGCAAGCGGT--T-ACTTCTTTCATTACA 339 Query 179 GCGTTACTATCACATATGAAGATGGTAGTCCACTTTTA-GCCAAAGGTTTTGGCAGAAAG 237 | ||| ||||| ||||||||||||| ||||| | | || |||||| ||||||||||| Sbjct 340 GTGTTGCTATCTCATATGAAGATGGCCGTCCA-GTGGAGGCTAAAGGTATTGGCAGAAAG 398 Query 238 ATTCTTGAAAAAGTTCAACAGACTTGTC-AAGCTGATTTGGGTTGCAAACATTTTGCTTA 296 |||||||| |||||||| |||| | || ||| ||||||||| | |||| | |||||||| Sbjct 399 ATTCTTGACAAAGTTCAGGAGACCTATCAAAG-TGATTTGGGGTCCAAATACTTTGCTTA 457 Query 297 TGATGGCGACAAGAATCT-TTATACTGTTGGTCCTCTTCCTAG-ATCCAGTCTAGACTTC 354 ||||||||| |||| ||| || ||||||||| ||||||| || | || || |||||| Sbjct 458 TGATGGCGAGAAGACTCTCTT-CACTGTTGGTGCTCTTCCCAGCA-ACAAACTTGACTTC 515 Query 355 TCTGTTGTTCTTGAA-ACCGCGCCTTCTAG--GAGA-AACGC-----A-G--ACAAAAGA 402 ||||||||||||||| | | |||||||| || | ||||| | | ||||| || Sbjct 516 TCTGTTGTTCTTGAAGA-CATACCTTCTAGCAGAAATAACGCTGGAAATGATACAAATGA 574 Query 403 --C---T--------A--AA-GCTTCCTC-ACCAATCCAAGAAATTCAAT-GTTGCA-AT 443 | | | || || ||| | ||||||| ||||||||| || |||| | || Sbjct 575 TGCGGATAGGAAAAGATCAAGGCGTCC-CAACCAATCTAAGAAATTC-ATGGTTG-AGAT 631 Query 444 CCTTTTTGCGCCTCCAGAA-ATCCCAATGGAAGCTATTGCAAATGCTCTTCAAGGAAAGA 502 || | | || || || ||||| ||| | |||||||||| ||||||||||| ||| Sbjct 632 AAGTTAT--G-CTGCA-AAGATCCCCATGCAGGCTATTGCAAGCGCTCTTCAAGGGAAGG 687 Query 503 AAACTA-A-ACATCTTCTAGATGCTATCAGAGTGATGGACT-GTATTTTGAGCCAAAATG 559 | || | | | |||||| ||| ||| | |||||| |||| | ||||||| |||| | || Sbjct 688 AGAC-AGAGA-ATCTTCAAGACGCTCTAAGAGTGCTGGA-TATTATTTTGCGCCAGAGTG 744 Query 560 CAGCTAGACAAGGTTGCCTCCTAGTTCGGCAATCTTTCTTCCACAATGACGCAAAGTACT 619 ||||||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| ||| Sbjct 745 CAGCTAGGCAAGGTTGCCTCCTTGTTCGCCAGTCTTTTTTCCACAATGACGTAAAGAACT 804 Query 620 TTGCGA-ATATCGGTGAAGGTGT-AGATTGTTGCAAAGGATTTCATTCAAGCTTCAGAAC 677 ||| | ||| |||| |||||| || | |||||| ||| || |||||||| |||||||| Sbjct 805 TTG-TACCTATTGGTGGAGGTGTCAG-TGGTTGCAGAGGGTTCCATTCAAGTTTCAGAAC 862 Query 678 TACTCAGGGAGGCTTGTCCCTCAATATTGATGTTTCGACTGCTATGATAGTAAAACCTGG 737 ||||||||||||||| ||||| |||||||| ||| ||| | ||||| ||| ||||||| Sbjct 863 TACTCAGGGAGGCTTATCCCTGAATATTGACACTTCAACTACGATGATTGTACAACCTGG 922 Query 738 TCCTGTTGTTGATTTTCTTATTGCAAATCAAG-GTGTGAACGATCCATTCTCTATTAACT 796 |||||||||||||| || ||||||| | || ||| ||||||| | | | ||| Sbjct 923 ACCTGTTGTTGATTTCCTGCTTGCAAA-CCAGAACAAGAAAGATCCATACGGTGTGGACT 981 Query 797 GGAAAAAGGCTAAAAATACTCTGAAAAATCTTAGAGTTAAAG-TCCTCCCTTCAAATCA- 854 |||| |||||| | ||| || ||||| |||||| ||| | || | ||||||| | Sbjct 982 GGAACAAGGCTCGTCGTGTTCTCAAGAATCTGAGAGTTCAAGTTACT-CTTTCAAAT-AG 1039 Query 855 AGAATACAAGATAACCGGACTAAGTGGACTACA-CTGCAAAGATCAAACGTTTACTTGGA 913 |||||||||||||| ||| ||||||| || ||| |||||||||||||| |||||| |||| Sbjct 1040 AGAATACAAGATAAGCGGGCTAAGTGAAC-ACAGCTGCAAAGATCAAATGTTTACATGGA 1098 Query 914 AGAAAAGGAACCAAAACAGGGAATTTGAGGAGGTTGAGATTACAGTGTC-CGATTACTTC 972 |||| ||| | || |||||||||||||||||||||| |||||| | | ||||| | Sbjct 1099 GGAAACCTAACGACAAGGGGGAATTTGAGGAGGTTGAGATCACAGTG-CTCAATTAC-T- 1155 Query 973 ACT-AGGATCCGTGA-AATCGAACTGCGTTACTCGGGTGGCTTACCTTGTATCAATGTTG 1030 | | | || ||| | || ||| |||| || || |||| ||| ||||| |||||||||| Sbjct 1156 A-TAAAGA-GCGT-AGTATTGAAGTGCGATATTCAGGTGACTTCCCTTGCATCAATGTTG 1212 Query 1031 GTAAGCCAAATCGTCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAAC 1090 ||||||| || ||||| || ||||| ||||||||| ||||| | ||||| ||||| || | Sbjct 1213 GTAAGCCGAAGCGTCCCACTTACTTCCCCATTGAGTTCTGTAATCTTGTGTCTCTTCAGC 1272 Query 1091 GCTATACTAAAGCGCTAACCAAATTCCAGAGGAG-TAAC-CTTA-TCA-AAGAA-TCAAG 1145 | || || ||| |||| ||||| || |||||| | | | | || | | || || || || Sbjct 1273 GATACACAAAATCGCTTACCAATTTTCAGAGG-GCT-GCAC-TAGT-AGAA-AAGTCTAG 1327 Query 1146 GCAGAATCCACAACAAAGAATTGGTGT-GTTAACCAGAGCTCTCAA-GACTAGTAATTAT 1203 |||||| |||| | |||| | ||| | |||||| || ||| || ||| || |||||| Sbjct 1328 GCAGAAGCCACCAGAAAGGA-TGGCCTCACTAACCAAAGGTCTAAAGGAC-AGCAATTAT 1385 Query 1204 AATGATGACCCAATGTTGCAAGAAT-GTGGTGTTAGGATTGGCT-CTGACTTCACTCAAG 1261 |||| ||||| ||||||||| || ||||||| || ||| | | ||||||| |||| Sbjct 1386 AATGCCGACCCGGTGTTGCAAG-ATAGTGGTGTCAGCATT-ATTACCAACTTCACCCAAG 1443 Query 1262 TCGAAGGCCGCGTGTTACCAACACCAAAGCTTAAAGCT-GGCAAAGAACAAGACATCTA- 1319 | ||||||||| | ||||||||||||||||| |||| | || || | ||| ||| | || Sbjct 1444 TTGAAGGCCGCATCTTACCAACACCAAAGCTGAAAG-TGGGGAACGGACAGGAC-TTTAC 1501 Query 1320 TCCTATTAATGGGAGTTGGAAC--T--T--CAAG-AAC-----AAGCCAGCCACAGTTAC 1367 || | || ||| | |||||| | | || | ||| ||||| | || ||||| Sbjct 1502 CCCAAACAACGGGCGCTGGAACTTTAATAGCAGGAAACTTGTTGAGCCAACGACTGTTAC 1561 Query 1368 TAGATGGGCTGTTGTGAACTTCTCTGCTCGCTGTGACCCGCAAA--AGATTATT-GATGA 1424 ||||||||||||||||||||| |||||||| ||||| |||| | ||||| | || Sbjct 1562 TAGATGGGCTGTTGTGAACTTTTCTGCTCGTTGTGA--TACAAATGCGCTTATTCG-CGA 1618 Query 1425 TTTGACCAGATGTGGAAAGAT-GAAAGGAATTAACGTAGATTCTCCATACCATG-TCGTC 1482 |||| ||||||||| || | ||||||||||| ||||| |||||| | | | | ||| Sbjct 1619 CTTGATTAGATGTGGACAG-TCAAAAGGAATTAATGTAGAGCCTCCATTCAAGGAT-GTC 1676 Query 1483 TTTGAA-GAAAATCCTCAGTTTAAGG-ATGCCA-CTGGTTCTGTAAGAGTTGATAAGATG 1539 || || ||||||||||||||| ||| ||| || | | | |||| ||||| || || ||| Sbjct 1677 ATT-AACGAAAATCCTCAGTTT-AGGAATG-CACCAGCTACTGTGAGAGTAGAGAATATG 1733 Query 1540 TTTCAACATTTACAAT-CAATACT--C-GGCGAAGTTCCTCCAAAATTCCTTCTATGCAT 1595 ||| | || || ||| ||| ||| | || | || ||| | ||||| || ||||| Sbjct 1734 TTTGAGCAGATAAAATCCAA-ACTCCCAGG-GCAG--CCT-C--TGTTCCTACTTTGCAT 1786 Query 1596 A--CTC-GAAAAGAAAAACTCTGATGTTTA-------T-G-----AAA-AATCTTGTTCA 1638 | ||| |||| |||||||||||||||||| | | ||| ||||||||| Sbjct 1787 ACTCTCAGAAAGGAAAAACTCTGATGTTTATGGCCCTTGGAAAAAAAAGAATCTTGTT-G 1845 Query 1639 AT-GTGGAATTGTGA---A-TGTATTGTTCCTCCTCAAAACTTAAATGATCAGTATCTCA 1693 || ||||||||||| | || |||| | | || ||| | | || ||||||||||||| Sbjct 1846 ATCTTGGAATTGTGACTCAGTGCATTGCT-C-CCACAAGA-GTGAACGATCAGTATCTCA 1902 Query 1694 CAAATCTTCTACTAAAGATAAATGCCAAGCTTGGTGGATTGAATTCAGTT-TTGG-ATAT 1751 | ||| |||| || |||||||||||||||||||||||||||||||| | | || | | || Sbjct 1903 CCAATGTTCTCCTGAAGATAAATGCCAAGCTTGGTGGATTGAATTC-GCTGTTAGCA-AT 1960 Query 1752 GGAGCTG-TCAGGAACAATGCCTCTGGTAATG-AGAGTTCCTACCATCATTATTGGAATG 1809 |||| | ||| | ||||||| |||| | | ||||||||| |||||| |||| ||| Sbjct 1961 AGAGC-GCTCACCAGCAATGCCAAAAGTAACGCA-AGTTCCTACTATCATTGTTGGGATG 2018 Query 1810 GATGTATCTCATGGTTCTCCTGGACAGTCTGATCATATACCATCCATTGCCGCGGTTGTG 1869 |||||||| |||||||| ||||| ||||||||| ||| ||||| ||||| ||||||||| Sbjct 2019 GATGTATCCCATGGTTCCCCTGGCCAGTCTGAT-ATA--CCATCAATTGCAGCGGTTGTG 2075 Query 1870 AGCTCCAGAGAGTGGCCACTGATCTCAAAATACAGGGCTTGTGTGCGTACACAGTCGC-C 1928 ||||||||| | |||||||| ||||||||||| | ||| ||||| || ||||| |||| | Sbjct 2076 AGCTCCAGACAATGGCCACTCATCTCAAAATATAAGGCATGTGTACGCACACAATCGCGC 2135 Query 1929 TAAAGTTGAAATGATCGATAGCCTCTTTAAACCCGTCTCTGACAAAGATGATC-AAGGTA 1987 ||| | |||||||| |||| ||||| ||||||||||||| |||||| || || || Sbjct 2136 AAAA-TGGAAATGATTGATAATCTCTTCAAACCCGTCTCTGGCAAAGACGAAGGAATGT- 2193 Query 1988 TCATGAGAGAGCTCTTGCTTGACTTTCACT-CAAGTTCTG-GAA-AG-AAACC-GAATCA 2042 ||| | | ||||| ||||| |||||| ||| || |||||| ||| || ||||| || || Sbjct 2194 TCA-G-G-GAGCTGTTGCTCGACTTTTACTACA-GTTCTGAGAAGAGGAAACCAGAG-CA 2248 Query 2043 CATTATCATTTTCAGGGATGGTGTCAGTGAATCTCAGTTTAACCAAGTTCTTAATATTGA 2102 ||| || || |||||||||||||| ||||| |||||||| || ||||||||||||||||| Sbjct 2249 CATCATTATATTCAGGGATGGTGTGAGTGAGTCTCAGTTCAATCAAGTTCTTAATATTGA 2308 Query 2103 ACTGGATCAGATGATGCA 2120 | |||||||||||||||| Sbjct 2309 ATTGGATCAGATGATGCA 2326 Score = 438 bits (237), Expect = 8e-122 Identities = 369/433 (85%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 2125 AACCACCACACGAAGTTCTTCCAAACCGA-AAGCCCTAATAATGTTCTTCCAGGAACAAT 2183 ||||||||||| |||||||||| | ||| ||||| ||||||||| |||||||||||| Sbjct 2388 AACCACCACACCAAGTTCTTCC-AGTCGAGTCGCCCTGATAATGTTCCTCCAGGAACAAT 2446 Query 2184 AATTGACAGCAACATCTGTCACCAACACAACAACGATTTCTATCTTTGTGCTCATGCTGG 2243 |||||||||| | |||||||||| || |||| ||||||||||| || || ||||| || Sbjct 2447 AATTGACAGCCAGATCTGTCACCCACGCAACTTTGATTTCTATCTCTGCGCCCATGCCGG 2506 Query 2244 AAAGATTGGAACTACAAGGCCAACACATTACCATGTGCTCTACGACGAGATTGGATTTGA 2303 | |||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 2507 CATGATTGGAACTACAAGGCCAACACATTACCATGTGCTGTATGACGAGATTGGATTTGC 2566 Query 2304 CACAGATCAACTCCAAGAACTTGTGCATTCACTATCCTATGTCTACCAGCGGAGCACAAC 2363 ||||||| | || ||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 2567 CACAGATGACCTTCAAGAACTTGTGCATTCTCTATCCTATGTCTACCAGAGGAGCACTAC 2626 Query 2364 TGCCATCTCTCTTGTTGCGCC-GATATGTTATGCTCATTTGGCGGCTGCACAGATGGCAA 2422 ||| ||||| | ||||| || | | |||||||| |||||||| ||||||||||||| || Sbjct 2627 TGCGATCTCAGTCGTTGCACCAGTT-TGTTATGCGCATTTGGCAGCTGCACAGATGGGAA 2685 Query 2423 CTGCAATGAAGTTTGAGGACATGTCTGAGACTTCATCGAGCCACGGCGGGA-TCACCACA 2481 ||| ||||||| ||| || ||||||||||||| |||||||| || |||| |||||||| Sbjct 2686 CTGTGATGAAGTATGAAGAGTTGTCTGAGACTTCTTCGAGCCATGG-GGGAATCACCACA 2744 Query 2482 GCTGGAGCAGTCCCTGTGCCTCCCATGCCGAAGCTGAAC-ACCAACGTTGCTAGTTCAAT 2540 | ||||||||||||||||||||||||||| |||||||| | || ||||| | || || Sbjct 2745 CCCGGAGCAGTCCCTGTGCCTCCCATGCCGCAGCTGAACGATAAA-GTTGCAACCTCCAT 2803 Query 2541 GTTCTTTTGCTGA 2553 |||||| |||||| Sbjct 2804 GTTCTTCTGCTGA 2816 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96254049115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5