BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21030.1
Length=2553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704 3347 0.0
Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1 977 0.0
> Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704
Length=2547
Score = 3347 bits (1812), Expect = 0.0
Identities = 2328/2569 (91%), Gaps = 68/2569 (3%)
Strand=Plus/Plus
Query 31 ATGGAACGTGAACCTTTGAAGAGCAAGAGTAGT-CTTCTTCCAATGACTCGCCGTGGCAA 89
|||||||| ||| || |||||| |||||||| | |||||||||||| |||| ||||||||
Sbjct 1 ATGGAACGGGAATCTGTGAAGAACAAGAGTA-TACTTCTTCCAATGGCTCGGCGTGGCAA 59
Query 90 CGGTTCCAAAGGA-CAGAAGATTCTTCTGCTCACTAACCACTTCAGAGTCAACTTCAGAA 148
||||||||||||| | |||||||| ||| |||||||||||||| ||||| ||||||||
Sbjct 60 CGGTTCCAAAGGATC-GAAGATTCATCTTCTCACTAACCACTTTAGAGTTAACTTCAGTC 118
Query 149 AACCAAACAGTCATAATTTCTTCCATTACAGCGTTACTATCACATATGAAGATGGTAGTC 208
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 AACCAAACAGTCATGATTTCTTCCATTACAGCGTTGCTATCACATATGAAGATGGTAGTC 178
Query 209 CACTTTTAGCCAAAGGTTTTGGCAGAAAGATTCTTGAAAAAGTTCAACAGACTTGTCAAG 268
|| || |||||| ||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 179 CAGTTGAAGCCAAGGGTATTGGTAGAAAGATTCTTGAAAAAGTTCAACAGACTTATCAAA 238
Query 269 CTGATTTGGGTTGCAAACATTTTGCTTATGATGGCGACAAGAATCTTTAT-ACTGTTGGT 327
|||||||||||| |||||| ||||||||||| |||||||||||||||| | |||| |||
Sbjct 239 CTGATTTGGGTTTCAAACACTTTGCTTATGACGGCGACAAGAATCTTT-TCACTGCCGGT 297
Query 328 CCTCTTCCTAGATCCAGTCTAGACTTCTCTGTTGTTCTTGAA-ACCGCGCCTTCTAGGAG 386
|||||||| |||||| |||||| |||||||||||||||||| | | | ||||||||||
Sbjct 298 CCTCTTCCCGGATCCAATCTAGAATTCTCTGTTGTTCTTGAAGA-CATGTCTTCTAGGAG 356
Query 387 AAACGCAGACAAAAGACTAAAGCTTCCTCACCAATCCAAGAAATTCAATGTTGCAATCCT 446
||| |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 357 AAATGCAGGCAAAAGACTAAGGCTTTCTCACCAATCCAAGAAATTCAATGTTGCAATCAG 416
Query 447 TTTTGCGCCTCCAGAAATCCCAATGGAAGCTATTGCAAATGCTCTTCAAGGAAAGAAAAC 506
||| | || || ||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 417 CTTT--G-CTGCAAAAATCCCTATGAAAGCTATTGCAAATGCTCTTCAAGGAAAGGAAAC 473
Query 507 TAAA-CATCTTCTAGATGCTATCAGAGTGATGGACTG-TATTTTGAGCCAAAATGCAGCT 564
||| ||| ||| ||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 474 -AAACCATTTTCAAGATGCTATCAGAGTGATGGA-TGTTATTTTGTGCCAAAATGCAGCT 531
Query 565 -AGACAAGGTTGCCTCCTAGTTCGGCAATCTTTCTTCCACAATGACGCAAAGTACTTTGC 623
|| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 532 CGGA-AAGGTTGCCTCCTAGTTCGCCAATCTTTCTTCCACAATGATGCAAAGTACTTTAC 590
Query 624 GAATATCGGTGAAGGTGTAGATTGTTGCAAAGGATTTCATTCAAGCTTCAGAACTACTCA 683
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 591 GAATATCGGTGAAGGTGTTGATTGTTGCAAAGGATTCCATTCAAGCTTCAGAACTACTCA 650
Query 684 GGGAGGCTTGTCCCTCAATATTGATGTTTCGACTGCTATGATAGTAAAACCTGGTCCTGT 743
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 651 GGGAGGCTTGTCCCTCAATATTGATGTTTCGACTACGATGATAGTAAAACCTGGTCCTGT 710
Query 744 TGTTGATTTTCTTATTGCAAATCAAGGTGTGAACGATCCATTCTCTATTAACTGGAAAAA 803
||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 711 TGTTGGTTTTCTTATTGGAAACCAAGGTGTGAAAGATCCATTCTCTATTAACTGGAAAAA 770
Query 804 GGCTAAAAATACTCTGAAAAATCTTAGAGTTAAAGTCCTCCCTTCAAATCAAGAATACAA 863
|||||||| |||||| || |||||||||||||||||| |||| |||||||||||||||||
Sbjct 771 GGCTAAAAGTACTCTCAAGAATCTTAGAGTTAAAGTCATCCCCTCAAATCAAGAATACAA 830
Query 864 GATAACCGGACTAAGTGGACTACACTGCAAAGATCAAACGTTTACTTGGAAGAAAAGGAA 923
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 831 GATAACCGGACTAAGTGGACTACACTGCAAAGATCAAATGTTTACTTGGAAGAAAAAGAA 890
Query 924 CCAAAACAGGGAATTTGAGGAGGTTGAGATTACAGTGTCCGATTACTTCACTAGGATCCG 983
||||||| ||||| |||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 891 CCAAAACGGGGAAGTTGAGGAGGTTGAGATTACAGTGTTTGATTACTTCACCAAAATCCG 950
Query 984 TGAAATCGAACTGCGTTACTCGGGTGGCTTACCTTGTATCAATGTTGGTAAGCCAAATCG 1043
||| ||| |||||| ||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 951 TGACATCAAACTGCATTATTCAGGTGGCTTACCATGTATCAATGTTGGTAAGCCAAATCG 1010
Query 1044 TCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAACGCTATACTAAAGC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 TCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAACGCTATACTAAAGC 1070
Query 1104 GCTAACCAAATTC-CAGAGGAGTAACCTTATCAAAGAATCAAGGCAGAATCCACAACAAA 1162
|| || || || ||||||||||||||| |||||||||||||||| || || || ||||
Sbjct 1071 TCTTAC-AAGTTTTCAGAGGAGTAACCTTGTCAAAGAATCAAGGCAAAACCCTCATCAAA 1129
Query 1163 GAATTGGT-GTGTTAACCAGAGCTCTCAAGA-CTAGTAATTATAATGATGACCCAATGTT 1220
|||| || |||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1130 GAAT-GGAAGTGTTAACCAGAGCTCTCAAGAAC-AGTAATTATAGTGATGACCCAATGTT 1187
Query 1221 GCAAGAATGTGGTGTTAGGATTGGCTCTGACTTCACTCAAGTCGAAGGCCGCGTGTTACC 1280
|||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||
Sbjct 1188 GCAAGAATGTGGTGTTAGAATAGGCTCTGACTTCACTCAAGTCGAAGGTCGCTTGTTACC 1247
Query 1281 AACACCAAAGCTTAAAGCTGGCAAAGAACAAGACATCTATCCTATTAATGGGAGTTGGAA 1340
|||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 1248 AACACCCAAGCTTAAAGCTGGCAATGAACAAGACATCTATCCTAAGAATGGGCGTTGGAA 1307
Query 1341 CTTCAAGAACAAGCCAG---------C--CA-CAGTTACTAGATGGGCTGTTGTGAACTT 1388
|||||| |||||| || | || |||||||||||||||| |||||||||||
Sbjct 1308 CTTCAATAACAAGATAGTTTTTGAGTCAGCAACAGTTACTAGATGGGCCGTTGTGAACTT 1367
Query 1389 CTCTGCTCGCTGTGACCCGCAAAAGATTATT-GATGATTTGACCAGATGTGGAAAGATGA 1447
|||||||||||||||||||| |||||| || | |||||||| |||||||||||| ||||
Sbjct 1368 CTCTGCTCGCTGTGACCCGCGCAAGATTGTTCG-TGATTTGATCAGATGTGGAAATATGA 1426
Query 1448 AAGGAATTAACGTAGATTCTCCATACCATGTCGTCTTTGAAGAAAATCCTCAGTTTAAGG 1507
||||||||||||||||| |||||||| | || |||||||||||| |||||||||||||||
Sbjct 1427 AAGGAATTAACGTAGATCCTCCATACAAAGTTGTCTTTGAAGAAGATCCTCAGTTTAAGG 1486
Query 1508 ATGCCACT-GGTTCTGTAAGAGTTGATAAGATGTTTCAACATTTACAATCAATACTCGGC 1566
|||| || ||||||||||||||||| ||||||||| ||| |||| |||| | ||||||
Sbjct 1487 ATGC-ACCAGGTTCTGTAAGAGTTGAAAAGATGTTTGAACGTTTAGAATCCACACTCGGT 1545
Query 1567 GAAGTTCCTCCAAAATTCCTTCTATGCATACTCGAAAAGAAAAACTCTGATGTTTATG-- 1624
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GACGTTCCTCCAAATTTCCTTCTATGCATACTCGAAAAGAAAAACTCTGATGTTTATGGT 1605
Query 1625 ------AAAAA------TCTTGTTCAATGT-GGAATTGTGAAT--GT--ATTGTTCCTCC 1667
||||| |||||||||| || |||||||||||| || |||| ||||||
Sbjct 1606 CCTTGGAAAAAGAAAAATCTTGTTCAA-GTTGGAATTGTGAATCAGTGTATTGCTCCTCC 1664
Query 1668 TCAAAAC-TTAAATGATCAGTATCTCACAAATCTTCTACTAAAGATAAATGCCAAGCTTG 1726
||||||| |||| |||||| |||||||||||| |||| || |||||||||||||||||||
Sbjct 1665 TCAAAACGTTAA-TGATCATTATCTCACAAATGTTCTCCTCAAGATAAATGCCAAGCTTG 1723
Query 1727 GTGGATTGAATTCAGTTTTGGATATGGAGCTGTCA-GGAACAATGCCTCTGGTAATGAGA 1785
|||||||||||||||| ||||||||||||| |||| || |||||||| ||||||||| |
Sbjct 1724 GTGGATTGAATTCAGTGTTGGATATGGAGCGGTCACGGG-CAATGCCTTTGGTAATGAAA 1782
Query 1786 GTTCCTACCATCATTATTGGAATGGATGTATCTCATGGTTCTCCTGGACAGTCTGATCAT 1845
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1783 GTTCCTACCATCATTATTGGGATGGATGTATCTCATGGTTCTCCTGGACAGTCTGATG-T 1841
Query 1846 ATACCATCCATTGCCGCGGTTGTGAGCTCCAGAGAGTGGCCACTGATCTCAAAATACAGG 1905
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1842 A--CCATCCATTGCCGCGGTTGTGAGCTCCAGAGAATGGCCACTGATCTCAAAATACAGG 1899
Query 1906 GCTTGTGTGCGTACACAGTCGCCTAAAGTTGAAATGATCGATAGCCTCTTTAAACCCGTC 1965
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 1900 GCTTGTGTGCGTACACAGTCGCGTAAAGTTGAAATGATCGATAACCTCTTTAAACCAGTC 1959
Query 1966 TCTGACAAAGATGATCAAGGTATCATGAGAGAGCTCTTGCTTGACTTTCACTCAAGTTCT 2025
||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1960 TCTGACAAAGATGATGAAGGTATCATGAGGGAGCTCTTGCTTGACTTTTACTCAAGTTCT 2019
Query 2026 GGAAAGAAACCGAATCACATTATCATTTTCAGGGATGGTGTCAGTGAATCTCAGTTTAAC 2085
| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2020 GCAGTCAAACCCAATCACATTATTATTTTCAGGGATGGTGTGAGTGAATCTCAGTTTAAC 2079
Query 2086 CAAGTTCTTAATATTGAACTGGATCAGATGATGCAAATAAACCACCACACGAAGTTCTTC 2145
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 2080 CAAGTTCTTAATATTGAACTGGATCAGATGAAGCAAAAAAACCACCACACCAAGTTCTTC 2139
Query 2146 CAAACC-GAAAGCCCTAATAATGTTCTTCCAGGAACAATAATTGACAGCAACATCTGTCA 2204
|| ||| | | ||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2140 CAGACCAGGA-GCCCTGATAATGTTCCTCCAGGAACAATAATTGATAGCAACATCTGTCA 2198
Query 2205 CCAACACAACAACGATTTCTATCTTTGTGCTCATGCTGGAAAGATTGGAACTACAAGGCC 2264
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2199 CCAACACAACAATGATTTCTATCTTTGTGCTCATGCTGGAATGATTGGAACTACAAGGCC 2258
Query 2265 AACACATTACCATGTGCTCTACGACGAGATTGGATTTGACACAGATCAACTCCAAGAACT 2324
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2259 AACACATTACCATGTGCTGTATGACGAGATTGGATTTGACACAGATCAACTCCAAGAACT 2318
Query 2325 TGTGCATTCACTATCCTATGTCTACCAGCGGAGCACAACTGCCATCTCTCTTGTTGCGCC 2384
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2319 TGTGCATTCCCTATCCTATGTCTACCAGCGGAGCACAACTGCAATCTCTCTTGTTGCGCC 2378
Query 2385 GATATGTTATGCTCATTTGGCGGCTGCACAGATGGCAACTGCAATGAAGTTTGAGGACAT 2444
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2379 GATATGTTATGCTCATTTGGCGGCTGCACAGATGGGAACTGCGATGAAGTTTGAGGACAT 2438
Query 2445 GTCTGAGACTTCATCGAGCCACGGCGGGATCACCACAGCTGGAGCAGTCCCTGTGCCTCC 2504
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 2439 TTCTGAGACTTCATCGAGCCACGGCGGGATCACCATAGCTGGAGCAGTCTCTGTGCCACC 2498
Query 2505 CATGCCGAAGCTGAACACCAACGTTGCTAGTTCAATGTTCTTTTGCTGA 2553
||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2499 CATGCCGAAGCTGAACACCAATGTTGCTAGTTCAATGTTCTTCTGCTGA 2547
> Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1
Length=2940
Score = 977 bits (529), Expect = 0.0
Identities = 1661/2178 (76%), Gaps = 195/2178 (9%)
Strand=Plus/Plus
Query 63 TCTTCTTCCAATGACTC-GCC--GTGGCAACGGTTCCAAAGGACAGAAGATTCTTCTGCT 119
|||||| |||||| ||| ||| | |||| |||||||||||||||||||||| ||| ||
Sbjct 224 TCTTCTCCCAATGGCTCGGCCTAGAGGCAGTGGTTCCAAAGGACAGAAGATTCCTCTTCT 283
Query 120 CACTAACCACTTCAGAGTCAACTTCAGA-AAACCAAACAGTCATAATTTCTTCCATTACA 178
||||| ||||| ||||||| || | | ||| ||| | || | | ||||| |||||||
Sbjct 284 TACTAATCACTTTGGAGTCAAGTTTA-ACAAAGCAAGCGGT--T-ACTTCTTTCATTACA 339
Query 179 GCGTTACTATCACATATGAAGATGGTAGTCCACTTTTA-GCCAAAGGTTTTGGCAGAAAG 237
| ||| ||||| ||||||||||||| ||||| | | || |||||| |||||||||||
Sbjct 340 GTGTTGCTATCTCATATGAAGATGGCCGTCCA-GTGGAGGCTAAAGGTATTGGCAGAAAG 398
Query 238 ATTCTTGAAAAAGTTCAACAGACTTGTC-AAGCTGATTTGGGTTGCAAACATTTTGCTTA 296
|||||||| |||||||| |||| | || ||| ||||||||| | |||| | ||||||||
Sbjct 399 ATTCTTGACAAAGTTCAGGAGACCTATCAAAG-TGATTTGGGGTCCAAATACTTTGCTTA 457
Query 297 TGATGGCGACAAGAATCT-TTATACTGTTGGTCCTCTTCCTAG-ATCCAGTCTAGACTTC 354
||||||||| |||| ||| || ||||||||| ||||||| || | || || ||||||
Sbjct 458 TGATGGCGAGAAGACTCTCTT-CACTGTTGGTGCTCTTCCCAGCA-ACAAACTTGACTTC 515
Query 355 TCTGTTGTTCTTGAA-ACCGCGCCTTCTAG--GAGA-AACGC-----A-G--ACAAAAGA 402
||||||||||||||| | | |||||||| || | ||||| | | ||||| ||
Sbjct 516 TCTGTTGTTCTTGAAGA-CATACCTTCTAGCAGAAATAACGCTGGAAATGATACAAATGA 574
Query 403 --C---T--------A--AA-GCTTCCTC-ACCAATCCAAGAAATTCAAT-GTTGCA-AT 443
| | | || || ||| | ||||||| ||||||||| || |||| | ||
Sbjct 575 TGCGGATAGGAAAAGATCAAGGCGTCC-CAACCAATCTAAGAAATTC-ATGGTTG-AGAT 631
Query 444 CCTTTTTGCGCCTCCAGAA-ATCCCAATGGAAGCTATTGCAAATGCTCTTCAAGGAAAGA 502
|| | | || || || ||||| ||| | |||||||||| ||||||||||| |||
Sbjct 632 AAGTTAT--G-CTGCA-AAGATCCCCATGCAGGCTATTGCAAGCGCTCTTCAAGGGAAGG 687
Query 503 AAACTA-A-ACATCTTCTAGATGCTATCAGAGTGATGGACT-GTATTTTGAGCCAAAATG 559
| || | | | |||||| ||| ||| | |||||| |||| | ||||||| |||| | ||
Sbjct 688 AGAC-AGAGA-ATCTTCAAGACGCTCTAAGAGTGCTGGA-TATTATTTTGCGCCAGAGTG 744
Query 560 CAGCTAGACAAGGTTGCCTCCTAGTTCGGCAATCTTTCTTCCACAATGACGCAAAGTACT 619
||||||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| |||
Sbjct 745 CAGCTAGGCAAGGTTGCCTCCTTGTTCGCCAGTCTTTTTTCCACAATGACGTAAAGAACT 804
Query 620 TTGCGA-ATATCGGTGAAGGTGT-AGATTGTTGCAAAGGATTTCATTCAAGCTTCAGAAC 677
||| | ||| |||| |||||| || | |||||| ||| || |||||||| ||||||||
Sbjct 805 TTG-TACCTATTGGTGGAGGTGTCAG-TGGTTGCAGAGGGTTCCATTCAAGTTTCAGAAC 862
Query 678 TACTCAGGGAGGCTTGTCCCTCAATATTGATGTTTCGACTGCTATGATAGTAAAACCTGG 737
||||||||||||||| ||||| |||||||| ||| ||| | ||||| ||| |||||||
Sbjct 863 TACTCAGGGAGGCTTATCCCTGAATATTGACACTTCAACTACGATGATTGTACAACCTGG 922
Query 738 TCCTGTTGTTGATTTTCTTATTGCAAATCAAG-GTGTGAACGATCCATTCTCTATTAACT 796
|||||||||||||| || ||||||| | || ||| ||||||| | | | |||
Sbjct 923 ACCTGTTGTTGATTTCCTGCTTGCAAA-CCAGAACAAGAAAGATCCATACGGTGTGGACT 981
Query 797 GGAAAAAGGCTAAAAATACTCTGAAAAATCTTAGAGTTAAAG-TCCTCCCTTCAAATCA- 854
|||| |||||| | ||| || ||||| |||||| ||| | || | ||||||| |
Sbjct 982 GGAACAAGGCTCGTCGTGTTCTCAAGAATCTGAGAGTTCAAGTTACT-CTTTCAAAT-AG 1039
Query 855 AGAATACAAGATAACCGGACTAAGTGGACTACA-CTGCAAAGATCAAACGTTTACTTGGA 913
|||||||||||||| ||| ||||||| || ||| |||||||||||||| |||||| ||||
Sbjct 1040 AGAATACAAGATAAGCGGGCTAAGTGAAC-ACAGCTGCAAAGATCAAATGTTTACATGGA 1098
Query 914 AGAAAAGGAACCAAAACAGGGAATTTGAGGAGGTTGAGATTACAGTGTC-CGATTACTTC 972
|||| ||| | || |||||||||||||||||||||| |||||| | | ||||| |
Sbjct 1099 GGAAACCTAACGACAAGGGGGAATTTGAGGAGGTTGAGATCACAGTG-CTCAATTAC-T- 1155
Query 973 ACT-AGGATCCGTGA-AATCGAACTGCGTTACTCGGGTGGCTTACCTTGTATCAATGTTG 1030
| | | || ||| | || ||| |||| || || |||| ||| ||||| ||||||||||
Sbjct 1156 A-TAAAGA-GCGT-AGTATTGAAGTGCGATATTCAGGTGACTTCCCTTGCATCAATGTTG 1212
Query 1031 GTAAGCCAAATCGTCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAAC 1090
||||||| || ||||| || ||||| ||||||||| ||||| | ||||| ||||| || |
Sbjct 1213 GTAAGCCGAAGCGTCCCACTTACTTCCCCATTGAGTTCTGTAATCTTGTGTCTCTTCAGC 1272
Query 1091 GCTATACTAAAGCGCTAACCAAATTCCAGAGGAG-TAAC-CTTA-TCA-AAGAA-TCAAG 1145
| || || ||| |||| ||||| || |||||| | | | | || | | || || || ||
Sbjct 1273 GATACACAAAATCGCTTACCAATTTTCAGAGG-GCT-GCAC-TAGT-AGAA-AAGTCTAG 1327
Query 1146 GCAGAATCCACAACAAAGAATTGGTGT-GTTAACCAGAGCTCTCAA-GACTAGTAATTAT 1203
|||||| |||| | |||| | ||| | |||||| || ||| || ||| || ||||||
Sbjct 1328 GCAGAAGCCACCAGAAAGGA-TGGCCTCACTAACCAAAGGTCTAAAGGAC-AGCAATTAT 1385
Query 1204 AATGATGACCCAATGTTGCAAGAAT-GTGGTGTTAGGATTGGCT-CTGACTTCACTCAAG 1261
|||| ||||| ||||||||| || ||||||| || ||| | | ||||||| ||||
Sbjct 1386 AATGCCGACCCGGTGTTGCAAG-ATAGTGGTGTCAGCATT-ATTACCAACTTCACCCAAG 1443
Query 1262 TCGAAGGCCGCGTGTTACCAACACCAAAGCTTAAAGCT-GGCAAAGAACAAGACATCTA- 1319
| ||||||||| | ||||||||||||||||| |||| | || || | ||| ||| | ||
Sbjct 1444 TTGAAGGCCGCATCTTACCAACACCAAAGCTGAAAG-TGGGGAACGGACAGGAC-TTTAC 1501
Query 1320 TCCTATTAATGGGAGTTGGAAC--T--T--CAAG-AAC-----AAGCCAGCCACAGTTAC 1367
|| | || ||| | |||||| | | || | ||| ||||| | || |||||
Sbjct 1502 CCCAAACAACGGGCGCTGGAACTTTAATAGCAGGAAACTTGTTGAGCCAACGACTGTTAC 1561
Query 1368 TAGATGGGCTGTTGTGAACTTCTCTGCTCGCTGTGACCCGCAAA--AGATTATT-GATGA 1424
||||||||||||||||||||| |||||||| ||||| |||| | ||||| | ||
Sbjct 1562 TAGATGGGCTGTTGTGAACTTTTCTGCTCGTTGTGA--TACAAATGCGCTTATTCG-CGA 1618
Query 1425 TTTGACCAGATGTGGAAAGAT-GAAAGGAATTAACGTAGATTCTCCATACCATG-TCGTC 1482
|||| ||||||||| || | ||||||||||| ||||| |||||| | | | | |||
Sbjct 1619 CTTGATTAGATGTGGACAG-TCAAAAGGAATTAATGTAGAGCCTCCATTCAAGGAT-GTC 1676
Query 1483 TTTGAA-GAAAATCCTCAGTTTAAGG-ATGCCA-CTGGTTCTGTAAGAGTTGATAAGATG 1539
|| || ||||||||||||||| ||| ||| || | | | |||| ||||| || || |||
Sbjct 1677 ATT-AACGAAAATCCTCAGTTT-AGGAATG-CACCAGCTACTGTGAGAGTAGAGAATATG 1733
Query 1540 TTTCAACATTTACAAT-CAATACT--C-GGCGAAGTTCCTCCAAAATTCCTTCTATGCAT 1595
||| | || || ||| ||| ||| | || | || ||| | ||||| || |||||
Sbjct 1734 TTTGAGCAGATAAAATCCAA-ACTCCCAGG-GCAG--CCT-C--TGTTCCTACTTTGCAT 1786
Query 1596 A--CTC-GAAAAGAAAAACTCTGATGTTTA-------T-G-----AAA-AATCTTGTTCA 1638
| ||| |||| |||||||||||||||||| | | ||| |||||||||
Sbjct 1787 ACTCTCAGAAAGGAAAAACTCTGATGTTTATGGCCCTTGGAAAAAAAAGAATCTTGTT-G 1845
Query 1639 AT-GTGGAATTGTGA---A-TGTATTGTTCCTCCTCAAAACTTAAATGATCAGTATCTCA 1693
|| ||||||||||| | || |||| | | || ||| | | || |||||||||||||
Sbjct 1846 ATCTTGGAATTGTGACTCAGTGCATTGCT-C-CCACAAGA-GTGAACGATCAGTATCTCA 1902
Query 1694 CAAATCTTCTACTAAAGATAAATGCCAAGCTTGGTGGATTGAATTCAGTT-TTGG-ATAT 1751
| ||| |||| || |||||||||||||||||||||||||||||||| | | || | | ||
Sbjct 1903 CCAATGTTCTCCTGAAGATAAATGCCAAGCTTGGTGGATTGAATTC-GCTGTTAGCA-AT 1960
Query 1752 GGAGCTG-TCAGGAACAATGCCTCTGGTAATG-AGAGTTCCTACCATCATTATTGGAATG 1809
|||| | ||| | ||||||| |||| | | ||||||||| |||||| |||| |||
Sbjct 1961 AGAGC-GCTCACCAGCAATGCCAAAAGTAACGCA-AGTTCCTACTATCATTGTTGGGATG 2018
Query 1810 GATGTATCTCATGGTTCTCCTGGACAGTCTGATCATATACCATCCATTGCCGCGGTTGTG 1869
|||||||| |||||||| ||||| ||||||||| ||| ||||| ||||| |||||||||
Sbjct 2019 GATGTATCCCATGGTTCCCCTGGCCAGTCTGAT-ATA--CCATCAATTGCAGCGGTTGTG 2075
Query 1870 AGCTCCAGAGAGTGGCCACTGATCTCAAAATACAGGGCTTGTGTGCGTACACAGTCGC-C 1928
||||||||| | |||||||| ||||||||||| | ||| ||||| || ||||| |||| |
Sbjct 2076 AGCTCCAGACAATGGCCACTCATCTCAAAATATAAGGCATGTGTACGCACACAATCGCGC 2135
Query 1929 TAAAGTTGAAATGATCGATAGCCTCTTTAAACCCGTCTCTGACAAAGATGATC-AAGGTA 1987
||| | |||||||| |||| ||||| ||||||||||||| |||||| || || ||
Sbjct 2136 AAAA-TGGAAATGATTGATAATCTCTTCAAACCCGTCTCTGGCAAAGACGAAGGAATGT- 2193
Query 1988 TCATGAGAGAGCTCTTGCTTGACTTTCACT-CAAGTTCTG-GAA-AG-AAACC-GAATCA 2042
||| | | ||||| ||||| |||||| ||| || |||||| ||| || ||||| || ||
Sbjct 2194 TCA-G-G-GAGCTGTTGCTCGACTTTTACTACA-GTTCTGAGAAGAGGAAACCAGAG-CA 2248
Query 2043 CATTATCATTTTCAGGGATGGTGTCAGTGAATCTCAGTTTAACCAAGTTCTTAATATTGA 2102
||| || || |||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 2249 CATCATTATATTCAGGGATGGTGTGAGTGAGTCTCAGTTCAATCAAGTTCTTAATATTGA 2308
Query 2103 ACTGGATCAGATGATGCA 2120
| ||||||||||||||||
Sbjct 2309 ATTGGATCAGATGATGCA 2326
Score = 438 bits (237), Expect = 8e-122
Identities = 369/433 (85%), Gaps = 8/433 (2%)
Strand=Plus/Plus
Query 2125 AACCACCACACGAAGTTCTTCCAAACCGA-AAGCCCTAATAATGTTCTTCCAGGAACAAT 2183
||||||||||| |||||||||| | ||| ||||| ||||||||| ||||||||||||
Sbjct 2388 AACCACCACACCAAGTTCTTCC-AGTCGAGTCGCCCTGATAATGTTCCTCCAGGAACAAT 2446
Query 2184 AATTGACAGCAACATCTGTCACCAACACAACAACGATTTCTATCTTTGTGCTCATGCTGG 2243
|||||||||| | |||||||||| || |||| ||||||||||| || || ||||| ||
Sbjct 2447 AATTGACAGCCAGATCTGTCACCCACGCAACTTTGATTTCTATCTCTGCGCCCATGCCGG 2506
Query 2244 AAAGATTGGAACTACAAGGCCAACACATTACCATGTGCTCTACGACGAGATTGGATTTGA 2303
| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2507 CATGATTGGAACTACAAGGCCAACACATTACCATGTGCTGTATGACGAGATTGGATTTGC 2566
Query 2304 CACAGATCAACTCCAAGAACTTGTGCATTCACTATCCTATGTCTACCAGCGGAGCACAAC 2363
||||||| | || ||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 2567 CACAGATGACCTTCAAGAACTTGTGCATTCTCTATCCTATGTCTACCAGAGGAGCACTAC 2626
Query 2364 TGCCATCTCTCTTGTTGCGCC-GATATGTTATGCTCATTTGGCGGCTGCACAGATGGCAA 2422
||| ||||| | ||||| || | | |||||||| |||||||| ||||||||||||| ||
Sbjct 2627 TGCGATCTCAGTCGTTGCACCAGTT-TGTTATGCGCATTTGGCAGCTGCACAGATGGGAA 2685
Query 2423 CTGCAATGAAGTTTGAGGACATGTCTGAGACTTCATCGAGCCACGGCGGGA-TCACCACA 2481
||| ||||||| ||| || ||||||||||||| |||||||| || |||| ||||||||
Sbjct 2686 CTGTGATGAAGTATGAAGAGTTGTCTGAGACTTCTTCGAGCCATGG-GGGAATCACCACA 2744
Query 2482 GCTGGAGCAGTCCCTGTGCCTCCCATGCCGAAGCTGAAC-ACCAACGTTGCTAGTTCAAT 2540
| ||||||||||||||||||||||||||| |||||||| | || ||||| | || ||
Sbjct 2745 CCCGGAGCAGTCCCTGTGCCTCCCATGCCGCAGCTGAACGATAAA-GTTGCAACCTCCAT 2803
Query 2541 GTTCTTTTGCTGA 2553
|||||| ||||||
Sbjct 2804 GTTCTTCTGCTGA 2816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96254049115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5