BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21040.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894037 jgi|Araly1|894037|Al_scaffold_0006_2033 2416 0.0
> Ahg894037 jgi|Araly1|894037|Al_scaffold_0006_2033
Length=1593
Score = 2416 bits (1308), Expect = 0.0
Identities = 1469/1548 (95%), Gaps = 5/1548 (0%)
Strand=Plus/Plus
Query 293 ATTTGAGAATAGGTAATGATGGGTCTGTTGAGATTCCAAATGTGAAGTTGTGTTGTCAGA 352
||||||||||| | || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 50 ATTTGAGAATA-G-AA-AATGGGTCTGTTGAGATTCCAAGTGTGAAGTTGTCTTGTCAGC 106
Query 353 AAAAGAAGGGAACTTTAGTGCCCAGTGGCTCGAAACAGTTACTCTCTGACAAGGATTTGT 412
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 107 AAAAGAAGGGAACTTTGGTGCCTAGTGGATCGAAACAGTTGCTCTCTGACAAGGATTTGT 166
Query 413 CTACTACCATTATTGATTTACCTCAGGCATTGATATCTGAGATTCTTAATTGCCTTGACC 472
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTACTACCATTATTGATTTGCCTCAGGCATTGATATCTGAGATTCTTAATTGCCTTGACC 226
Query 473 CAAAAGAGTTGGGTCTAGTGTCTTGTGTTTCAACTTATCTGCATAGGTTAGCATCTGAGC 532
|||| ||||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 227 CAAAGGAGTTAGGTTTAGTGTCCTGTGTTTCAACTTGTCTGCATAAGTTAGCATCTGAGC 286
Query 533 ATCACGCTTGGAAGGAGTTCTATCGTGAGAGATGGGGACTCCCTGTAGTTTTCGGAGCTG 592
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 287 ATCACGCTTGGAAGGAGTTCTATCGTGAGAGATGGGGACTCCCCGTTGTTTTCGGAGCTA 346
Query 593 CAAGTTCAGGGCTTTCTGATGAGAGATCATGGAAAGATCTGTTTGTTGAAAGGGAATTTA 652
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 347 CAAGTTCAGGGCTTTCTGATGAGAGATCATGGAAAGAGCTGTTTGCTGAAAGGGAATTTA 406
Query 653 GGAGTAGGACCTTTTTAGGACGTTATAGTATTGATACTCTGTATGGTCACACTGAAGCAG 712
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 407 GGAGTAGGAACTTTTTAGGACGTTTTAGTATTGATACTCTGTATGGTCACACTGAAGCAG 466
Query 713 TCCGGACTGTTTTTCTCTTAGCTTCTGCCAAGCTCGTTTTCACTTCTGGATATGATTCCA 772
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TCCGGATTGTTTTTCTCTTAGCTTCTGCCAAGCTCGTTTTCACTTCTGGATATGATTCCA 526
Query 773 TTGTTCGGATGTGGGACATGGAAGAAGGCTTGTCTATTGCGGCATCTAAACCTCTCGGTT 832
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 527 TTGTTCGGATGTGGGACATGGAAGAAGGTTTGTCTATTGCAGCATCTAAACCTCTCGGTT 586
Query 833 GTACGATTAGGGCACTTGCTGCTGATACAAAGCTGTTGGTAGCTGGCGGTACTGATGGAT 892
| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GCACTATTAGGGCACTCGCCGCTGATACAAAGCTGTTGGTAGCTGGCGGTACTGATGGAT 646
Query 893 TCATTCATTGCTGGAAATCACTGGATGGTCTCCGGAACCTGTTTGATCTCACAGGTTTTC 952
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTATACATTGCTGGAAATCACTGGATGGTCTCCGGAACCTGTTTGATCTCACAGGTTTTC 706
Query 953 AGAAAGAGAAGACTGAGTTTCGGCTATGGGGACATGAGGGTCCTATTACATCTCTTGCCC 1012
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 707 AGAAAGAGAAGACCGACTTTCGGCTATGGGGACACGAGGGTCCTATTACATCTCTTGCCC 766
Query 1013 TGGACATGACAAGTATCTTTAGCGGTTCATGGGATATGTCTGTTCGTATATGGGATCGAT 1072
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 767 TGGACATGACAAGTATCTTTAGCGGTTCATGGGACATGTCTGTTCGTATATGGGATCGAT 826
Query 1073 CTTCAATGAAGTGTGTCAAAACCTTGAGGCATAGTGATTGGGTTTGGGGACTTGCACCTC 1132
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 827 CTTCAATGAAGTGTGTCAAAACCTTGAGGCATAGTGATTGGGTTTGGGGCCTTGCACCTC 886
Query 1133 ATGAAACCACCCTCGCTAGCACGTCAGGTTCTGATGTATATATTTGGGACGTT-AGCAGT 1191
||||||||| ||||||||||||||||||||| |||||||||||||||||| || | | ||
Sbjct 887 ATGAAACCAGCCTCGCTAGCACGTCAGGTTCCGATGTATATATTTGGGACATTGACC-GT 945
Query 1192 GAGACTCCATTGGCGATCATCCCTGATGCTCATGAGGGTACCACTTACTCTTTGGCAAGA 1251
||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 946 GAGACTCCACTGACGATCATACCTGATGCTCATGAGGGTACTACTTACTCTTTGGCAAGA 1005
Query 1252 AGCCATACTGGGGATTTCCTGTTTACTGGTGGAGAAGATGGAGGGATTAAAATGTTTGAG 1311
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1006 AGCCATACTGGGGATTTCCTGTTTACTGGCGGAGAAGATGGAGGGATTAAAATGTTTGAG 1065
Query 1312 ATCAGAAGATACGGTAGTGAAACAAGCGTTGTACTTATATCTCAATGGATGCCTCACACT 1371
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1066 ATCAGAAGATACGGTAGTGAAACAAGCGTTGTACTCATATCTCAATGGATGCCCCACACT 1125
Query 1372 AGTCCTGTCTACTCTCTTTCTTTTGAGTTTCCTTGGCTTGTCTCAGCATCCGGTGACGGT 1431
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1126 AGTCCTGTCTACTCTCTTTCTTTTGAGTTTCCCTGGCTTGTCTCAGCATCTGGTGACGGT 1185
Query 1432 AAACTCGCACTTATCGACGTTAGGAAACTGTTAAAAACTAACCGTTGTGCCTATTCCAAA 1491
||||||||||| |||||||||||||| |||| || ||||||||| |||||||||||| |
Sbjct 1186 AAACTCGCACTAATCGACGTTAGGAAGTTGTTGAAGACTAACCGTCGTGCCTATTCCAGA 1245
Query 1492 AGGATTTCTTCGAGTACTGTGGAACCGCCACAACGAATGCTGCACGGGTTCGGGTCAAAC 1551
|| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1246 AGAATTTCTTCGAGTACAGTGGAACCTCCACAAAGAATGCTGCACGGGTTCGGGTCAAAC 1305
Query 1552 TTGTTCTCTGTGGACGTGGGTTATGACCGTATAGTGTGTGGAGGTGAAGAAGGCACAGTC 1611
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1306 TTGTTCTCTGTGGATGTGGGTTGTGACCGTATAGTGTGTGGAGGTGAAGAAGGCATAGTC 1365
Query 1612 CGGATATGGAACTTCACACAAGCATTGGAGATAGAGCGAAGGACCCGAGCTCTGAAAGGA 1671
||| | ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 1366 CGGGTTTGGAACTTCACACAAGCGTTGGAGATAGAGCGAAGGGCTCGAGCTCTTAAAGGA 1425
Query 1672 ATGAGGCATGAGAATAGGATGAGACGAAGGAGAATGCAAATGGAGATGAACGCAAAGAAT 1731
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1426 ATGAGGCTTGAGAATAGGATGAGACGAAGGAGAATGCAAATGGAGATGAATGCAAAGAGT 1485
Query 1732 GGAAGGCCTGACCAATGCTCCATTGCTGCTCATAAGAACCCCATCAATGGAGAAAGGAAC 1791
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1486 GGAAGGCCTGACCAATGCTCCGTTGCTGCTCATAAGAACCCCATCAATGGAGATAGGAAC 1545
Query 1792 CGAGCCTGGCATAGTAAACGAAGAGCAAGCGGGAAGGCGAAGGCCTAA 1839
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CGAGCCTGGCATAGTAAACGAAGAGCAAGCGGGAAGGCGAAGGCCTAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5