BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21050.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489014 jgi|Araly1|489014|fgenesh2_kg.6__2148__AT5G21050.1 1663 0.0
> Ahg489014 jgi|Araly1|489014|fgenesh2_kg.6__2148__AT5G21050.1
Length=1062
Score = 1663 bits (900), Expect = 0.0
Identities = 1016/1071 (95%), Gaps = 12/1071 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGATTCTTCCTCAAGCCATGACTCACCACCTTCTCCGGCGATCACCGGAGATTCA 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGTCTGATTCTTCCTCAAGCCATGACTCTCCACCTTCTCCAGCGATCACCGGAGATTCA 60
Query 61 GAAACCA-CAGTGACCAACAACGAAT-CAGAATCCAACACAAAATGTCAAACAGCAATCC 118
||||||| || | ||| || || || |||||||||||||||||||||||||||||||||
Sbjct 61 GAAACCACCA-TAACC-AC--CG-ATCCAGAATCCAACACAAAATGTCAAACAGCAATCC 115
Query 119 AATCCTTATCCACGATCGTCACAAAC-ACAAACATCCCTTCCACAATAACCATCCTCCTC 177
|||||||||||||||||||||| ||| |||||||||||||||||||| | | |||||||
Sbjct 116 AATCCTTATCCACGATCGTCAC-AACTACAAACATCCCTTCCACAATCTCTACCCTCCTC 174
Query 178 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 234
Query 238 GGAGATAACAACCTCTGCCGTTGGCTCTACGACACATTCCAATCCGCGGAACCATCGCTT 297
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 235 GGAGACAACAACCTCTGCCGTTGGCTCTACGACACCTTCCAATCCGCTGAACCATCGCTT 294
Query 298 CAGCTTCTCGTCCTCCGATTCGTTCCTTTAATCGCTGGTCTCTACCTCTCTCGTGTCCCT 357
||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 295 CAGATTCTTGTCCTTCGATTCGTTCCTTTAATCGCTGGCCTCTACCTCTCTCGTGTCCCT 354
Query 358 CTCCGTCAACCACAAGCCGGATTCGAAGCCGTTTTACTCGCTCTCTACGCGCACGAAACA 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 355 CTCCGTCAACCACAAGCCGGATTCGAAGCGGTTTTACTCGCTCTCTACGCGCACGAAACA 414
Query 418 ACCTCACGTGCCGGTCAAGCAATAACCGTCAACATTCCAGATCTCTCATATCCAAGCATT 477
|||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 415 ACCTCACGCGCCGGTCAAGCGATAACCGTCAACATTCCAGATCTCTCACATCCCAGCATT 474
Query 478 TACCATGAATCCAAAGGTCTCACAAGGAACAACAACTCAACGTGCCTCAACATCGCTGTG 537
||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| ||
Sbjct 475 TACCACGAATCCAAAGGTCTCACTAGG---AACAATTCAACGTGCCTCAACATCGCCGTC 531
Query 538 ATCTCCTCCACGTTAGATCCACACGGGACGGTTAGATCCACGCGCCGCGCGAGGATCGTC 597
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 532 ATCTCCTCCACGTTAGATCCACACGGGACTGTGAGATCCACGCGCCGCGCGAGGATCGTC 591
Query 598 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 651
Query 658 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAATCTTCA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 652 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAGTCTTCA 711
Query 718 CGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 771
Query 778 GGAGGAAGATCTGAGAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTCCAACCG 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 772 GGAGGAAGATCTGAAAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTGCAACCG 831
Query 838 ATTTTGAGGATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAGTTATCT 897
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 832 ATTTTAAGAATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAATTAGCG 891
Query 898 GAGGCGGCGAATAAAGCTTGTCAGAGTTTGTATCTCCGATCTCTGCATGATATAAATCCG 957
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 892 GAGGCGGCGAATAAAGCTTGTCAGAGCTTGTATCTCCGATCTCTGCATGATATAAATCCG 951
Query 958 AAGGCGATTTTGGCTACCGGAAGTCTTCTTCGGCTCCGTGAGATGGCTCTTGATCCCAAG 1017
||||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 952 AAGGCGATTCTGGCTACCGGAAGTCTTCTCCGGCTCCGGGAGATGACTCTTGATCCCAAG 1011
Query 1018 AATCAAATCGATCACACTGAGCTATCAAACGACACCGTTCTCTCCGTTTGA 1068
|||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1012 AATCAAATAGATCACACTGAGATATCAAACGACACCGTTCTCTCTGTTTGA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5