BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21050.1 Length=1068 Score E Sequences producing significant alignments: (Bits) Value Ahg489014 jgi|Araly1|489014|fgenesh2_kg.6__2148__AT5G21050.1 1663 0.0 > Ahg489014 jgi|Araly1|489014|fgenesh2_kg.6__2148__AT5G21050.1 Length=1062 Score = 1663 bits (900), Expect = 0.0 Identities = 1016/1071 (95%), Gaps = 12/1071 (1%) Strand=Plus/Plus Query 1 ATGTCTGATTCTTCCTCAAGCCATGACTCACCACCTTCTCCGGCGATCACCGGAGATTCA 60 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1 ATGTCTGATTCTTCCTCAAGCCATGACTCTCCACCTTCTCCAGCGATCACCGGAGATTCA 60 Query 61 GAAACCA-CAGTGACCAACAACGAAT-CAGAATCCAACACAAAATGTCAAACAGCAATCC 118 ||||||| || | ||| || || || ||||||||||||||||||||||||||||||||| Sbjct 61 GAAACCACCA-TAACC-AC--CG-ATCCAGAATCCAACACAAAATGTCAAACAGCAATCC 115 Query 119 AATCCTTATCCACGATCGTCACAAAC-ACAAACATCCCTTCCACAATAACCATCCTCCTC 177 |||||||||||||||||||||| ||| |||||||||||||||||||| | | ||||||| Sbjct 116 AATCCTTATCCACGATCGTCAC-AACTACAAACATCCCTTCCACAATCTCTACCCTCCTC 174 Query 178 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCC 234 Query 238 GGAGATAACAACCTCTGCCGTTGGCTCTACGACACATTCCAATCCGCGGAACCATCGCTT 297 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 235 GGAGACAACAACCTCTGCCGTTGGCTCTACGACACCTTCCAATCCGCTGAACCATCGCTT 294 Query 298 CAGCTTCTCGTCCTCCGATTCGTTCCTTTAATCGCTGGTCTCTACCTCTCTCGTGTCCCT 357 ||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 295 CAGATTCTTGTCCTTCGATTCGTTCCTTTAATCGCTGGCCTCTACCTCTCTCGTGTCCCT 354 Query 358 CTCCGTCAACCACAAGCCGGATTCGAAGCCGTTTTACTCGCTCTCTACGCGCACGAAACA 417 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 355 CTCCGTCAACCACAAGCCGGATTCGAAGCGGTTTTACTCGCTCTCTACGCGCACGAAACA 414 Query 418 ACCTCACGTGCCGGTCAAGCAATAACCGTCAACATTCCAGATCTCTCATATCCAAGCATT 477 |||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct 415 ACCTCACGCGCCGGTCAAGCGATAACCGTCAACATTCCAGATCTCTCACATCCCAGCATT 474 Query 478 TACCATGAATCCAAAGGTCTCACAAGGAACAACAACTCAACGTGCCTCAACATCGCTGTG 537 ||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| || Sbjct 475 TACCACGAATCCAAAGGTCTCACTAGG---AACAATTCAACGTGCCTCAACATCGCCGTC 531 Query 538 ATCTCCTCCACGTTAGATCCACACGGGACGGTTAGATCCACGCGCCGCGCGAGGATCGTC 597 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 532 ATCTCCTCCACGTTAGATCCACACGGGACTGTGAGATCCACGCGCCGCGCGAGGATCGTC 591 Query 598 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 GGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTT 651 Query 658 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAATCTTCA 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 652 AATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAGTCTTCA 711 Query 718 CGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 777 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATT 771 Query 778 GGAGGAAGATCTGAGAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTCCAACCG 837 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 772 GGAGGAAGATCTGAAAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTGCAACCG 831 Query 838 ATTTTGAGGATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAGTTATCT 897 ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 832 ATTTTAAGAATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAATTAGCG 891 Query 898 GAGGCGGCGAATAAAGCTTGTCAGAGTTTGTATCTCCGATCTCTGCATGATATAAATCCG 957 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 892 GAGGCGGCGAATAAAGCTTGTCAGAGCTTGTATCTCCGATCTCTGCATGATATAAATCCG 951 Query 958 AAGGCGATTTTGGCTACCGGAAGTCTTCTTCGGCTCCGTGAGATGGCTCTTGATCCCAAG 1017 ||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||||| Sbjct 952 AAGGCGATTCTGGCTACCGGAAGTCTTCTCCGGCTCCGGGAGATGACTCTTGATCCCAAG 1011 Query 1018 AATCAAATCGATCACACTGAGCTATCAAACGACACCGTTCTCTCCGTTTGA 1068 |||||||| |||||||||||| |||||||||||||||||||||| |||||| Sbjct 1012 AATCAAATAGATCACACTGAGATATCAAACGACACCGTTCTCTCTGTTTGA 1062 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39762202431 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5