BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21060.2
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941659 jgi|Araly1|941659|scaffold_602203.1 1814 0.0
> Ahg941659 jgi|Araly1|941659|scaffold_602203.1
Length=1179
Score = 1814 bits (982), Expect = 0.0
Identities = 1103/1160 (95%), Gaps = 14/1160 (1%)
Strand=Plus/Plus
Query 118 AGAAGAGAGGAAGGATGAAGAAGATCCCGGTGCTTCTCATGGGCTGCGGAGGCGTTGGCC 177
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 7 AGAAGAGAAGAAGGATGAAGAAGATTGCGGTGCTTCTCATGGGATGCGGAGGCGTTGGCC 66
Query 178 GCCACCTTCTTCAACACATCGTC-TCTTGCCGATCGCTTCACGCCAAAATGGGAGTTC-A 235
||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 67 GCCACCTTCTTCAACACATCG-CGTCTTGCCGATCGCTTCACGCGAAAATGGGAGTTCAA 125
Query 236 TATACG-GGTGATTGGAGTATGTGATAGTAAATCCTTAGTTGCTCCAATGGATGTGCTCA 294
| |||| | || ||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 126 T-TACGAGTTG-TTGGAGTATCTGACAGTAAATCTTTAGTTGCTCCAATGGATGTGCTCA 183
Query 295 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCTTATCAAATCAACTGGTTCTG 354
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 184 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCGTATCAAATCATCTGGTTCGG 243
Query 355 CATTATCGAAGTTGGGTGCTTTGGAAAAAGGTGGATATCGAGTCG-TCCATGATTCCGAG 413
|||||||||||||||||||||| ||||||||||||||| | || ||| |||||||
Sbjct 244 CATTATCGAAGTTGGGTGCTTT------AGGTGGATATCGAGT-GTTCAATGCTTCCGAG 296
Query 414 TTAAGCACGGAAACAGAAGAGATTGCAAAACTTCTTGGTAAATCTACAGGCTTAGCTGTG 473
||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 297 TTAAGCAGGGAAACAGAAGAGATCGCAAAACTTCTTGGTAAATCTGCAGGCTTAGCTGTT 356
Query 474 GTGGATTGCTCAGCCAGCATGGAGACGATTGAAATATTGATGAAGGCAGTTGACTTGGGT 533
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 357 GTGGATTGCTCAGCCAGCATGGAAACGATTGAAATATTGATCAAGGCAGTTGACTTGGGT 416
Query 534 TGCTGTATTGTCCTGGCAAATAAGAAGCCTGTTACTTCAACGCTGGAACATTACGACAAA 593
|||||| ||||||||||||||||||||||| |||||||||| || ||||||||||| |||
Sbjct 417 TGCTGTGTTGTCCTGGCAAATAAGAAGCCTCTTACTTCAACACTAGAACATTACGATAAA 476
Query 594 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGTCTTCCTGTC 653
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGACTTCCTGTC 536
Query 654 ATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGT 713
||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 537 ATCGCATCCTTGAACCGCATAATCTCGTCTGGAGATCCTGTTAATAAAATTGTCGGTAGT 596
Query 714 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 656
Query 774 GTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCGGT 833
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 GTTGTTCAAGCTGCCAAAACGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCAGT 716
Query 834 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 776
Query 894 ATGGACAGCATTAAGATAGAGAGCTTGTATCCAGAAGAGATGGGACCTGGACTCATGTCT 953
||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 777 ATGGACAGCATAAAGATAGAGAGCCTGTATCCTGAAGAGATGGGACCTGGACTCATGTCT 836
Query 954 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 896
Query 1014 AAAAAAGCTTCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 1073
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AAAAGAGCTTCATCAAATGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 956
Query 1074 GTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGT 1133
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 957 GTTCAAGTTGGCATTCGAGAAGTTCCAAAAGATTCACCATTGGGACGATTAAGAGGCAGT 1016
Query 1134 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1076
Query 1194 GCCGGAGCCGGGAACGACACAACTGCAGCCGGTGTTCTTGCAGACATCATCGACTTGCAG 1253
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1077 GCTGGAGCCGGGAACGACACGACTGCAGCCGGTGTTCTTGCAGACATCATCGATTTGCAG 1136
Query 1254 GATCTTTTTCACTGAGAGGA 1273
||||||||||||||||||||
Sbjct 1137 GATCTTTTTCACTGAGAGGA 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5