BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21060.2 Length=1443 Score E Sequences producing significant alignments: (Bits) Value Ahg941659 jgi|Araly1|941659|scaffold_602203.1 1814 0.0 > Ahg941659 jgi|Araly1|941659|scaffold_602203.1 Length=1179 Score = 1814 bits (982), Expect = 0.0 Identities = 1103/1160 (95%), Gaps = 14/1160 (1%) Strand=Plus/Plus Query 118 AGAAGAGAGGAAGGATGAAGAAGATCCCGGTGCTTCTCATGGGCTGCGGAGGCGTTGGCC 177 |||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 7 AGAAGAGAAGAAGGATGAAGAAGATTGCGGTGCTTCTCATGGGATGCGGAGGCGTTGGCC 66 Query 178 GCCACCTTCTTCAACACATCGTC-TCTTGCCGATCGCTTCACGCCAAAATGGGAGTTC-A 235 ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| | Sbjct 67 GCCACCTTCTTCAACACATCG-CGTCTTGCCGATCGCTTCACGCGAAAATGGGAGTTCAA 125 Query 236 TATACG-GGTGATTGGAGTATGTGATAGTAAATCCTTAGTTGCTCCAATGGATGTGCTCA 294 | |||| | || ||||||||| ||| |||||||| ||||||||||||||||||||||||| Sbjct 126 T-TACGAGTTG-TTGGAGTATCTGACAGTAAATCTTTAGTTGCTCCAATGGATGTGCTCA 183 Query 295 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCTTATCAAATCAACTGGTTCTG 354 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | Sbjct 184 AAGAGGAACTGAATGATGAACTCTTGTCAGAAGTTTGCCGTATCAAATCATCTGGTTCGG 243 Query 355 CATTATCGAAGTTGGGTGCTTTGGAAAAAGGTGGATATCGAGTCG-TCCATGATTCCGAG 413 |||||||||||||||||||||| ||||||||||||||| | || ||| ||||||| Sbjct 244 CATTATCGAAGTTGGGTGCTTT------AGGTGGATATCGAGT-GTTCAATGCTTCCGAG 296 Query 414 TTAAGCACGGAAACAGAAGAGATTGCAAAACTTCTTGGTAAATCTACAGGCTTAGCTGTG 473 ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 297 TTAAGCAGGGAAACAGAAGAGATCGCAAAACTTCTTGGTAAATCTGCAGGCTTAGCTGTT 356 Query 474 GTGGATTGCTCAGCCAGCATGGAGACGATTGAAATATTGATGAAGGCAGTTGACTTGGGT 533 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 357 GTGGATTGCTCAGCCAGCATGGAAACGATTGAAATATTGATCAAGGCAGTTGACTTGGGT 416 Query 534 TGCTGTATTGTCCTGGCAAATAAGAAGCCTGTTACTTCAACGCTGGAACATTACGACAAA 593 |||||| ||||||||||||||||||||||| |||||||||| || ||||||||||| ||| Sbjct 417 TGCTGTGTTGTCCTGGCAAATAAGAAGCCTCTTACTTCAACACTAGAACATTACGATAAA 476 Query 594 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGTCTTCCTGTC 653 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 477 TTGGCTTTGCATCCGCGATTCATCCGCCATGAATCTACTGTTGGTGCTGGACTTCCTGTC 536 Query 654 ATCGCATCCTTGAACCGCATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGT 713 ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| Sbjct 537 ATCGCATCCTTGAACCGCATAATCTCGTCTGGAGATCCTGTTAATAAAATTGTCGGTAGT 596 Query 714 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TTGAGCGGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAA 656 Query 774 GTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCGGT 833 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 657 GTTGTTCAAGCTGCCAAAACGCTGGGGTACACTGAACCAGATCCACGTGACGACCTCAGT 716 Query 834 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GGCATGGATGTTGCTAGAAAGGGTTTGATTCTTGCTCGACTTCTTGGGAAGAGGATAATT 776 Query 894 ATGGACAGCATTAAGATAGAGAGCTTGTATCCAGAAGAGATGGGACCTGGACTCATGTCT 953 ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 777 ATGGACAGCATAAAGATAGAGAGCCTGTATCCTGAAGAGATGGGACCTGGACTCATGTCT 836 Query 954 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GTGGATGATTTCCTCCATAATGGAATAGTAAAACTTGATCAGAATATAGAGGAGAGAGTT 896 Query 1014 AAAAAAGCTTCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 1073 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 897 AAAAGAGCTTCATCAAATGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGC 956 Query 1074 GTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGT 1133 |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 957 GTTCAAGTTGGCATTCGAGAAGTTCCAAAAGATTCACCATTGGGACGATTAAGAGGCAGT 1016 Query 1134 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 GACAATATAGTAGAGATATATAGCCGTTGCTACAAGGAGCAGCCTTTGGTGATTCAAGGT 1076 Query 1194 GCCGGAGCCGGGAACGACACAACTGCAGCCGGTGTTCTTGCAGACATCATCGACTTGCAG 1253 || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1077 GCTGGAGCCGGGAACGACACGACTGCAGCCGGTGTTCTTGCAGACATCATCGATTTGCAG 1136 Query 1254 GATCTTTTTCACTGAGAGGA 1273 |||||||||||||||||||| Sbjct 1137 GATCTTTTTCACTGAGAGGA 1156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53973877165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5