BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21070.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489018 jgi|Araly1|489018|fgenesh2_kg.6__2152__AT5G21070.1 1578 0.0
> Ahg489018 jgi|Araly1|489018|fgenesh2_kg.6__2152__AT5G21070.1
Length=1071
Score = 1578 bits (854), Expect = 0.0
Identities = 1016/1091 (93%), Gaps = 23/1091 (2%)
Strand=Plus/Plus
Query 1 CTCAGAACCTCAGATCTTATTCTTAGAAGTTTC-CCCATGAAATCCGAGAAGATTCAAAT 59
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1 CTCAGAACCTCAGATCTTTTTCTTAGAAGTCTCTCCCATGAAATCCGAGAAGATTCAAAT 60
Query 60 GTAAATTCAGCC-TCCGATTCATATATTTTGCTCACCGGAAACTTCAGATCGAGCTACTG 118
|||||| || || |||||||| || | |||||| |||||| |||||||||||||||||||
Sbjct 61 GTAAATCCA-CCTTCCGATTCGTAGAATTTGCTTACCGGAGACTTCAGATCGAGCTACTG 119
Query 119 CAATTTGCGGATCGTGtttttttttttCTTTCAATTCACGGTGTATTTATCTCGGGAGAA 178
|||||||||||||||| ||| |||||||||||||||||||| |||| ||||||
Sbjct 120 CAATTTGCGGATCGTG--------TTT-TTTCAATTCACGGTGTATTTTTCTCAGGAGAA 170
Query 179 GAAGAATGGATACTTTCACGGCGGAGGATCTGTCGACGATCGGCGGAATAGCGACAGTAT 238
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 171 GAAGAATGGACACTTTCACGGCGGAGGATCTATCGACGATCGGCGGAATAGCGACGGTAT 230
Query 239 CGCTCCTTCACTCGTTTATTCCGACGCATTGGCTACCTTTCTCCATCGTCGGACGTGCGC 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 231 CGCTCCTTCACTCGTTTATTCCGACGCATTGGTTACCTTTCTCCATCGTCGGACGTGCGC 290
Query 299 AGAAATGGACGCTTTCGAGAACACTCCTCGTCACTGCATTTGGAGCAGTCCTACATGTTA 358
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |
Sbjct 291 AGAAATGGACGCTTTCGAGAACCCTCTTCGTCACTGCACTTGGAGCAGTCCTGCATGTCA 350
Query 359 TATCCACTTCTCTCCTTGGTATAACAGCAATCACAATGGCGAATACCATCGCTGGTGAAG 418
|||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 351 TATCCACTTCCCTTCTTGGTATAACAGCGATCACAATGGCGAATACCATCGCCAGTGAAG 410
Query 419 AGACTGTTCACAAACTTGCTTCCCTTTTGCTTGTATTTCTCGGTGGAAGCTATGTTTTGC 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 411 AGACTGTTCACAAACTTGCTTCCCTTTTGCTTGTATTTCTCGGAGGAAGCTATGTCTTGC 470
Query 479 TGTTTTTGGCTGGTAAAGGTGGTCACACTCATTCTCATAACCAACCCATGGAGAAAATGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGTTTTTGGCTGGTAAAGGTGGTCACACTCATTCTCATAACCAACCCATGGAGAAAATGG 530
Query 539 CTGTTGCTGGACTTGTCCTTGTTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTT 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTGTTGCTGGGCTTGTCCTTGTTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTT 590
Query 599 TCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCA 658
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 591 TCCTTGCTGTTGGAAATTCAAAGTCCATGATGGTTCTCGCCGTCATAGTTCTGCTGTTCA 650
Query 659 GCACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAGCCAGCTCA 718
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 651 GCACCATATTGGTGATGACATCGCTGGTGGCTCTATCCTTCTATGGTGCAAGCCAGCTCA 710
Query 719 AGTTTCACTGGGTGGAGCGGTACGACAAACTACTGGTTGGTTCAGTCCTGTGTTTGGTAG 778
||||||||||||||||||| || ||||||||||| |||||||| ||||||||| ||||||
Sbjct 711 AGTTTCACTGGGTGGAGCGATATGACAAACTACTTGTTGGTTCGGTCCTGTGTCTGGTAG 770
Query 779 GTATCTTAACCCTTCTCTTCCATGATCATGACCATGGCGGTCATGAAGCACATCAACTCC 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 GTATCTTAACCCTTCTCTTCCATGATCATGACCATGGTGGTCATGAAGCACATCAACTCC 830
Query 839 ACAGGAAAATCATTACTCTTTAGATACCGTTTCGAGTCTCTGTTTTGCCTATCTGTCATG 898
||||||||||||||||||| |||| |||||||| ||| |||||||||||| |||||||||
Sbjct 831 ACAGGAAAATCATTACTCTCTAGAGACCGTTTCAAGTTTCTGTTTTGCCTGTCTGTCATG 890
Query 899 TCTGTTTGTTGTAGAGCGTCTTAAGGTCTATTAATCTTTCTGCTTCGCGTTGTATGTCTA 958
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 891 TCTGTTTGTTGTAGAGCGGCTTAAGGTCTATGAATCTTTCTGCTTCGCGTTGTATGTTTA 950
Query 959 TAA-CTAGTTGTAACGCTCTCTGTTGCACGTGAAGAAACATATGGAAGCATTAAATTCCT 1017
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TAATC-AGTTGTAACGCTCTCTGTTGCACGTGAAGAAACATATGGAAGCATTAAATTCCT 1009
Query 1018 TAAATAGAACAACTCTTTGGAGGTCTAGTGTAAGGCTTGTAGCTTTTACATAATTTTGTA 1077
| ||||||||||||||||||||||| | |||| | || | || |||| ||||||||
Sbjct 1010 TTAATAGAACAACTCTTTGGAGGTCCATTGTA-G-CT---A--TT--ACATGATTTTGTA 1060
Query 1078 GTTGTTCCGTT 1088
|||||||||||
Sbjct 1061 GTTGTTCCGTT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5