BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21080.1
Length=3360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489019 jgi|Araly1|489019|fgenesh2_kg.6__2153__AT5G21080.1 4931 0.0
> Ahg489019 jgi|Araly1|489019|fgenesh2_kg.6__2153__AT5G21080.1
Length=3343
Score = 4931 bits (2670), Expect = 0.0
Identities = 3161/3385 (93%), Gaps = 85/3385 (3%)
Strand=Plus/Plus
Query 19 GCaaaaaaaaaaaaaaaaagagtttcaaaatatggtt-ttgaa-aaacatatgaaaaaaC 76
|||||||||||||||||||||||||| |||||||||| | || ||| | || | |||
Sbjct 1 GCAAAAAAAAAAAAAAAAAGAGTTTCTAAATATGGTTGATAAATAAAAACAT--AGAAAG 58
Query 77 TTCCGCAATTATCT-CTTTTTCTTTACAAAACAAAACAGCTTCGTCGATTCTC-T-TCTT 133
||||||||| |||| |||||| ||| |||||||||||||| |||||||||||| | ||||
Sbjct 59 TTCCGCAATCATCTCCTTTTT-TTTGCAAAACAAAACAGC-TCGTCGATTCTCTTCTCTT 116
Query 134 CCTCCTCAAATTCTCTTTCACATTTTTCCAGATGGATCTCTGTTTTGACT-CTTCGTTAT 192
| |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||||
Sbjct 117 CTTCCTCAAATTCTCTTTCACA-TTTTCCAGATGGATCTCTCTTTTGA-TCCTTCGTTAT 174
Query 193 CCCAATCATACATTGATTTCACGGTTATGATGTTGTGTCTGTAAATCTCTCGTAT-C-A- 249
||||| ||||||||||||| | |||||||||||||||||||||||| | | |
Sbjct 175 CCCAACCATACATTGATTT--C-------ATGTTGTGTCTGTAAATCTCTCGTTTCCTAG 225
Query 250 -TTGTTCGAATATTCGCGGAAGAGAGATAGATCGATGGGGGTTGTTTCAAGAACCGTGTT 308
|||||||||| || ||| |||||||| |||||||||||||| || ||||||||||||||
Sbjct 226 CTTGTTCGAATCTTGGCGTAAGAGAGAAAGATCGATGGGGGTCGTATCAAGAACCGTGTT 285
Query 309 CCCTGTATGTGAAAGCTTGTGTTGCTTTTGTCCGGCTTTGCGAGCCAGATCGAGACATCC 368
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CCCTGTCTGCGAAAGCTTGTGTTGCTTTTGTCCGGCTTTGCGAGCCAGATCGAGACATCC 345
Query 369 CGTCAAAAGATATAAACATCTTCTCGCTGATATCTTCCCTCGATCCCAGGATGAGCAACC 428
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CGTCAAGAGATATAAACATCTTCTCGCTGATATCTTCCCTCGATCCCAGGATGAGCAACC 405
Query 429 TAATGATCGAAAAATCGGTAAATTATGCGAGTATGCTGCGAAAAACCCTCTTCGTATCCC 488
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 406 TAATGATAGAAAAATCGGTAAATTATGCGAATATGCTGCGAAAAACCCTCTTCGTATCCC 465
Query 489 TAAGATCACAACCTCTCTTGAACAAAGGTGTTACAAGGAATTGAGAATGGAACAATTTCA 548
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 466 TAAGATCACAACCTATCTCGAACAAAGGTGTTACAAGGAATTGAGAATGGAGCAATTTCA 525
Query 549 CTCTGTTAAGATTGTAATGTCTATCTACAAGAAGCTCTTGGTTTCCTGTAATGAACAAAT 608
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 526 CTCTGTAAAGATTGTTATGTCTATCTACAAGAAGCTCTTGGTTTCATGTAATGAACAAAT 585
Query 609 GTTGTTGTTTGCTAGTAGCTACCTTGGTCTCATTCATATTCTTCTAGATCAAACTAGGTA 668
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 586 GTCGTTGTTTGCTAGTAGCTATCTTGGCCTCATTCATATTCTTCTAGATCAAAATAGGTA 645
Query 669 TGATGAGATGCGCATTTTAGGTTGTGAAGCTCTCTATGATTTTGTTACCAGTCAGGCAGA 728
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 646 TGATGAGATGCGCATCTTAGGTTGTGAAGCTCTCTATGATTTTGTTACCAATCAGGCAGA 705
Query 729 GGGCACTTACATGTTTAACTTAGATGGGTTGATCCCAAAAATCTGTCCTTTAGCTCATGA 788
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 GGGCACCTACATGTTTAACTTAGATGGATTGATCCCAAAAATCTGTCCTTTAGCTCATGA 765
Query 789 ATTGGGAGAAGAAGATAGCACAACAAATTTGTGTGCTGCTGGCCTCCAGGCCCTCTCATC 848
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 766 ATTGGGAGAAGAAGAAAGGACAACTAATTTGTGTGCTGCTGGCCTCCAGGCCCTCTCCTC 825
Query 849 CTTGGTTTGGTTTATGGGAGAGTTTTCTCATATATCAGTTGAATTTGACAATGTAGTCTC 908
| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 826 CATGGTTTGGTTTATGGGAGAATTTTCACATATATCAGTTGAATTTGACAATGTAGTCTC 885
Query 909 TGTTGTCTTAGAAAATTATGGAGGCCATAGTCAATCGTCCACTTCTGCAGTCAATCAAGA 968
|||||||||||||||||||||||||| ||||||| | |||||||| ||||||||| ||||
Sbjct 886 TGTTGTCTTAGAAAATTATGGAGGCCTTAGTCAACCCTCCACTTCAGCAGTCAATGAAGA 945
Query 969 CAACAAGGTTGCTTCCATTGATAAAGAGTTATCTCCTGCGGAAGCTGAAACAAGGATTGC 1028
||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 946 CAACAAGATTGCTTCTATTGATAAAGAACTATCTCCTGCGGAAGCTGAAACAAGAATTGC 1005
Query 1029 TTCTTGGACAAGAATCGTGGATGACAGAGGCAAGGCAATT---GT-A-T--CTGTGGAGG 1081
|||||||||||||||||||||||||||||||||||||||| || | | | | |||||
Sbjct 1006 TTCTTGGACAAGAATCGTGGATGACAGAGGCAAGGCAATTAGGGTAATTAACAG-GGAGG 1064
Query 1082 ATGCTAAAAACCCCAAGTTTTGGTCGAGGGTTTGTCTGCATAATCTGGCAAAGTTAGCTA 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1065 ATGCTAAAAACCCCAAGTTTTGGTCGAGGGTTTGTCTGCATAATCTGGCAAAGTTAGCAA 1124
Query 1142 AAGAAGCAACAACTGTGCGACGTGTTCTCGAGTCACTCTTCCGTTATTTTGATTTTAATG 1201
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1125 AAGAAGCAACAACTGTGCGACGTGTACTCGAGTCACTCTTTCGTTATTTTGATTTTAATG 1184
Query 1202 AAGTGTGGTCCACCGAGAACGGTCTTGCTGTATATGTGCTGCAGGACGTTCAGTTGCTGA 1261
|||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1185 AAGTTTGGTCCACAGAGAACGGTCTTGCTTTATATGTGCTTCAGGACGTTCAGTTGCTGA 1244
Query 1262 TCGAAAGATCTGGGCAAAACACGCATTTCCTGTTGTCTATCCTGATCAAGCATCTTGATC 1321
| ||||||||| | | ||| | ||||| ||| || |||||||||||
Sbjct 1245 TAGAAAGATCT--G--------G--TTT-GTATTGTC--TCC--AT-TTGCATCTTGATC 1286
Query 1322 ACAAGAATGTTCTAAAGAAGCCTAGAATGCAACTTGAAATAGTTTATGTTGCTACTGCAC 1381
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1287 ACAAGAATGTTTTAAAGAAGCCTAGAATGCAACTTGATATAGTGTATGTTGCTACTGCAC 1346
Query 1382 TTGCCCAACAGACTAAAGTTCTGCCATCCGTGGCAATCATTGGTGCCCTGAGTGATATGA 1441
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1347 TTGCTCAACAGACTAAAGTTCTTCCATCTGTGGCAATCATTGGTGCCCTGAGTGATATGA 1406
Query 1442 TTAGGCATCTGAGGAAGAGCATCCATTGTTCATTAGATGATTCGAATCTAGGGAATGAGA 1501
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTAGGCATCTAAGGAAGAGCATCCATTGTTCATTAGATGATTCGAATCTAGGGAATGAGA 1466
Query 1502 TGATTCAGTATAACCTGAAATTCGAAGCTG-TAGTTGAACAATGCCTCCTGCAATTATCC 1560
|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1467 TGATTCAGTATAACCTGAAATTCGAAGCTGCT-GTTGAACAATGCCTCGTGCAATTATCC 1525
Query 1561 CAAAAGGTAGGAGATGCAGGTCCTATCCTTGACATAATGGCTGTCATGTTGGAAAGCATG 1620
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1526 CAAAAGGTAGGAGATGCAGGTCCTATTCTTGACATAATGGCTGTCATGTTGGAAAGCATG 1585
Query 1621 TCAAATATTACAGTCATGGCAAGAACCCTAATCGCCGCAGTTTTCCGTACAGCACAAATT 1680
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1586 TCAAATATTACAGTCATGGCAAGAACCTTAATCGCCGCTGTTTTCCGCACAGCACAAATT 1645
Query 1681 ATAGCAGCTATACCAAATTTATCATATG-----AA---AA----C---AA----G--GCT 1719
|||||||||||||||||||||||||||| || || | || | |||
Sbjct 1646 ATAGCAGCTATACCAAATTTATCATATGAAAACAAGGCAAGTTGCTTAAATCTTGAAGCT 1705
Query 1720 TTTCCAGATGCACTTTTTCATCAACTGCTTCAAGCTATGGTCTGTGCTGACCATGAATCG 1779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 TTTCCAGATGCACTTTTCCATCAACTGCTTCAAGCTATGGTCTGTGCTGACCATGAATCG 1765
Query 1780 AGGATGGGGGCTCACCGTATATTTTCTGTTGTTCTGGTCCCATCTTCTGTTTCTCCAAGT 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 AGGATGGGGGCTCACCGTATATTTTCTGTTGTTCTGGTCCCATCTTCTGTTTCTCCAAGT 1825
Query 1840 TCAGTTCTCAACTCCAGAAGACCTGCTGATATGCAGAGGACACTGTCAAGAACTGTGTCT 1899
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1826 TCAGTTCCCAACTCTAGAAGACCTGCTGATATGCAGAGGACATTGTCAAGAACTGTGTCT 1885
Query 1900 GTGTTTTCTTCTTCAGCTGCACTCTTTAGAAAACTGAAGTTGGAGTCAGATAATTCTGTT 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 GTGTTTTCTTCTTCAGCTGCACTCTTTAGAAAACTGAAGTTGGAGTCAGATAATTCTGTT 1945
Query 1960 GATGATACTGCAAAGATGGAGAGAGTTTCAACACTTAGCAGGTCAACGTCAAAATTCATA 2019
||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 1946 GATGATACTGCGAAGATTGAGAGAGTTTCAACACTTAGCAGGTCAACTTCAATATTCACA 2005
Query 2020 AGAGGTGAAAGTTTTGACGACGAAGAGCCAAAGAACAATACTAGCTCAGTACTGAGCCGG 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 AGAGGTGAAAGTTTTGACGACGAAGAGCCAAAGAACAATACTAGCTCAGTACTGAGCCGG 2065
Query 2080 TTAAAGTCAAGTTACAGCCGATCTCAGAGTGTGAAAAGAAACCCGTCTTCAATGGTAG-C 2138
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 2066 TTAAAGTCAAGTTACAGCCGATCTCAGAGTGTGAAAAGGAACCCGTCTTCGATGGT-GTC 2124
Query 2139 AGATCAGAATTCTTCTGGAAGTTCACCAGAGAAACCAGTGATACCCTTAAGATTAAGCAG 2198
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2125 AGATCAGAATTCTTCTGGAAGTTCACCAGAGAAACCAGTGATACCTTTAAGATTAAGCAG 2184
Query 2199 CCACCAAATTTGCCTTTTGCTTTCATCGATTTGGGTGCAGTCTTTATCTCCTCACAACAT 2258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2185 CCACCAAATTTGCCTTTTGCTTTCATCGATTTGGGTGCAGTCTTTATCTCCTCACAACAT 2244
Query 2259 GCCACAAAATTATGAAGCCATTGCTAATACATTTAGCTTAGTACTTCTCTTCGGCCGGAC 2318
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2245 GCCACAAAATTATGAAGCCATTGCTAATACATTTAGCTTAGTACTTCTATTTGGCCGGAC 2304
Query 2319 TAAGCACTCTAGCAATGAAGTCTTGGTCTGGAGCTTTCAGCTAGCATTTTCTTTGCGTAA 2378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2305 TAAGCACTCTAGCAATGAAGTCTTGGTCTGGAGCTTTCAGCTAGCATTTTCTTTGCGGAA 2364
Query 2379 TCTGTCTCTTGGAGGACCCTTGCAGCCATCACGGCGTAGATCCCTCTTTACTTTGGCTAC 2438
||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2365 TCTCTCTCTTGGAGGACCGTTGCAGCCATCACGGCGTAGATCCCTCTTTACTCTGGCTAC 2424
Query 2439 ATCGATGATCATTTTCTCAGCGAAAGCCTTCAACATCCCTCCTCTTGTTAATAGCGCAAA 2498
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2425 ATCCATGATTATTTTCTCAGCAAAAGCCTTCAACATCCCTCCTCTTGTTAATAGCGCAAA 2484
Query 2499 AACCTCACTACAGGAAAAAACGGTAGACCCGTTTCTTCAATTGGTGGAAGATTGCAAGCT 2558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2485 AACCTCACTACAGGAAAAAACGGTAGACCCGTTTCTTCAATTGGTGGAAGATTGCAAGCT 2544
Query 2559 AGATGCTGTTTTCTATGGACAAGCAGACCAACCAGCAAAGAATTATGGATCAAAAGAAGA 2618
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2545 AGATGCTGTTTTCTATGGACAAGCAGAGCAACCAGCAAAGAATTATGGATCAAAAGAAGA 2604
Query 2619 CGATGACGACG-CTTCAC-GTTCACTTGTCACGATAGAAGAAGCTTCACAAAATCAATCT 2676
|||||| |||| ||| || | |||||| | |||||||||| || ||||||||||| ||
Sbjct 2605 CGATGATGACGCCTT-ACAG-TCACTTTTTGTGATAGAAGAAACTACACAAAATCAACCT 2662
Query 2677 CGAGAGCACTACGCTTCCATGATAATGAAGTTTTTGGGAAAACTATCAGATCAAGAATCG 2736
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2663 CGAGAGCATTACGCTTCCATGATAATGAAGTTTCTGGGAAAACTATCAGATCAAGAATCA 2722
Query 2737 TCGGCTATAAAGGAGCAGCTAGTTTCAGACTTTATACCTATCGATGGCTGTCCAGTTGGA 2796
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2723 ACGGCTATAAAGGAGCAGCTAGTTTCAGATTTTATACCTATCGATGGCTGTCCTGTTGGA 2782
Query 2797 ACGCAGTTGACAGAATCTCCAGTTCAAGTTTACCGTTCTGAAGaaaaaaaCAACAAACCT 2856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2783 ACGCAGTTGACAGAATCTCCAGTTCAAGTTTACCGTTCTGAAGAAAAAAACAACAAACCT 2842
Query 2857 CGAGAAAATGCTGAAACTCAATTGCTTATACCGGAGAATGATGCAGTGCCGAGTCCTCCA 2916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2843 CGAGAAAATGCTGAAACTCAATTGCTTATACCGGAGAATGATGCAGTGCCGAGTCCTCCA 2902
Query 2917 GAAGAACAGT-TTAGTCTTGACATACAACCTAATGCTAAAACTGCATTTCTTCTGAGCAT 2975
|||||||| | || ||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 2903 GAAGAACA-TCTTGGTCTTGACACACAACCTAATGCCAAAACCGCATTTCTTCTGAGCAT 2961
Query 2976 TGATGAACTTCTAAATGCAGTGTCTCAGACAACAGCACAATTAGGGAGATACTCAGTGTC 3035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2962 CGATGAACTTCTAAATGCAGTGTCTCAGACAACAGCACAATTAGGGAGATACTCAGTGTC 3021
Query 3036 TGATCCACCAGACATGACATACACAGAAATGGCAGGTCATTGCGAGGCTCTTCTCATGGG 3095
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 3022 TGATCCACCAGACATGACATACACAGAAATGGCAGGACATTGTGAGGCTCTTCTCATGGG 3081
Query 3096 AAAGCAAGAGAAGATGTCTTTCATGTCTGCCAAAAGCAACAAATTTAGCAGCAGCCAAAC 3155
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 3082 AAAGCAAGAGAAGATGTCTTTCATGTCTGCAAAAAGCAACAAATT---CAGCAGCCAAAC 3138
Query 3156 CAAGGAAGCTGTTGCTTTGCCTTGCAGTGGTGGGAACCCGTTTGTGGACCAGCGGAGCTC 3215
|||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 3139 CAAGGAAGCTACTGCTTTGCCTTGTAGTGGTGGGAATCCGTTTGTGGAGCAGCGGAGCTC 3198
Query 3216 GTGGGAGATGATGGGATTAGGTGCACCCGCGGCTTCAAATATCTGTGTCACAGAGTATCA 3275
||||||||||||||| || |||||||| |||||||||||||| || ||||||||||||||
Sbjct 3199 GTGGGAGATGATGGGTTTGGGTGCACCGGCGGCTTCAAATATGTGCGTCACAGAGTATCA 3258
Query 3276 AAATCAGCCTCCTTTCTTCAATCCTCCTTCCTCTACTCCTTTCGACAACTTCCTTACAGC 3335
||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 3259 AAACCATCCTCCTTTCTTCAATCCTCCTGCCTCTACTCCTTTTGACAACTTCCTTAAAGC 3318
Query 3336 CAAGCCGTTGGTTCCTCTTGATTAG 3360
|||||||||||||||||||||||||
Sbjct 3319 CAAGCCGTTGGTTCCTCTTGATTAG 3343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126845890809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5