BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21105.1
Length=2239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489021 jgi|Araly1|489021|fgenesh2_kg.6__2155__AT5G21105.1 2710 0.0
> Ahg489021 jgi|Araly1|489021|fgenesh2_kg.6__2155__AT5G21105.1
Length=1930
Score = 2710 bits (1467), Expect = 0.0
Identities = 1718/1836 (94%), Gaps = 30/1836 (2%)
Strand=Plus/Plus
Query 89 ATGGGTGTGTGGTGGATAGTGCTGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCGCC 148
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGTTGTGTGGTGGATA--G-TGGTGGTGGCTGTCTTGACTCACACGGCGTCTGCCACC 57
Query 149 GTGAGAGAATATCATTGGGAGGTGGAGTACAAGTATTGGTC-GCCGGACTGCAAAGAGGG 207
|||||||| ||| |||||||||| |||||||||| |||| | ||||||||||||||| ||
Sbjct 58 GTGAGAGAGTATGATTGGGAGGTTGAGTACAAGTTTTGG-CAGCCGGACTGCAAAGAAGG 116
Query 208 CGCCGTTATGACCGTCAACGGCGAGTTTCCTGGTCCCACCATAAAAGCCTTCGCCGGAGA 267
||||| |||||| |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 117 TGCCGTCATGACCATCAACGGCCAGTTTCCTGGCCCCACCATAAAAGCCGTCGCCGGAGA 176
Query 268 CACCATCGTCG-TCAATCTCACCAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 326
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 177 CACCATCGTCGTTC-ATCTCACGAACAAACTCACCACCGAAGGCCTTGTCATCCATTGGC 235
Query 327 ATGGAATCCGTCAGTTCGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACTCAATGCG 386
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 236 ATGGAATCCGTCAGTTGGGAAGTCCATGGGCAGATGGAGCAGCAGGAGTTACCCAATGTG 295
Query 387 CAATTAACCCTGGAGAGACTTTTACCTACAATTTCACTGTTGAAAAGCCGGGAACACATT 446
| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 296 CCATTAATCCTGGAGAGACGTTTACCTACAAATTCACTGTTGAGAAGCCGGGAACACATT 355
Query 447 TCTACCATGGACACTATGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 506
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCTACCATGGACACTACGGCATGCAGAGATCAGCTGGGCTATACGGATCGTTGATTGTGG 415
Query 507 ACGTGGCTAAAGGAAAGAGCGAGAGATTGAGATACGATGGTGAGTTTAATCTCTTACTCA 566
|||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 416 ACGTGGCTAAAGGACAGAGAGAGAGGTTGAGATACGATGGTGAGTTTAATCTCTTACTAA 475
Query 567 GTGACTGGTGGCATGAGGCTATTCCCTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 626
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 GTGACTGGTGGCATGAGCCTATTCCTTCCCAAGAACTCGGTCTTTCTTCCAAACCTATGC 535
Query 627 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGGAGGGGACAATTCAATTGTTCAT 686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GCTGGATCGGTGAAGCTCAGAGCATATTGATAAATGGAAGGGGACAATTCAATTGTTCAT 595
Query 687 TAGCGGCGCAATTTAGCAACAACACATCATTACCAATGTGCACGTTTAAAGAAGGTGATC 746
| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 596 TGGCGGCGCAATTTAGCAACA-CA--TCATTACCAATGTGCACGTTTAAAGAAGGTGATC 652
Query 747 AGTGCGCCCCACAGATACTCCACGTGGAGCCGAACAAGACTTACCGAATCAGACTCTCCA 806
|||| || ||||||| |||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 653 AGTGTGCACCACAGAAACTCAACGTGGAGCCTAACAAGACTTACCGAATCAGACTCGCCA 712
Query 807 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTCG 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 713 GCACCACCGCTCTTGCCTCCCTCAACTTGGCTGTTCAGGGACACAAGCTAGTGGTGGTAG 772
Query 867 AAGCCGACGGCAACTACATAACGCCGTTCA-CGACCGACGATATCGACATATACTCCGGC 925
||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 773 AAGCCGACGGCAACTACATTACGCCGTTCATC-ACCGACGATATCGACATATACTCCGGC 831
Query 926 GAAAGCTACTCCGTCCTTCTCACCACCGATCAAGACCCTTCACAAAACTATTACATCTCC 985
|| ||||| || || ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 832 GAGAGCTATTCTGTTCTTCTCACCACCGATCAAGACCCATCACAAAACTACTACATCTCC 891
Query 986 GTCGGCGTCCGTGGCCGGAAACCAAACACAACTCAGGCACTCACTATAT-TAAATTACGT 1044
|||||||||||||| ||||||||||||||||| || |||||| | || | ||||||||||
Sbjct 892 GTCGGCGTCCGTGGTCGGAAACCAAACACAACACAAGCACTCTCCAT-TCTAAATTACGT 950
Query 1045 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCACCGGTGACTCCACGGTGGGACGA 1104
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 951 AACTGCCCCTGCTTCAAAACTCCCTTCTTCTCCTCCGCCGGTGACTCCACGGTGGGACGA 1010
Query 1105 TTTCGAACGAAGCAAAAATTTCTCTAAGAAGATCTTCTCAGCGATGGGATCACCATCGCC 1164
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1011 TTTCGAACGAAGCAAAAATTTCTCCAAGAAGATCTTCTCAGCGATGGGATCTCCATCGCC 1070
Query 1165 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACACAGAATCTAATCGACGGATA 1224
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 GCCGAAGAAATACAGAAAACGGTTGATTCTTCTCAACACTCAGAATCTAATCGACGGATA 1130
Query 1225 CACGAAATGGGCGATCAACAACGTCTCTCTAGTGACTCCGGCAACGCCGTATCTCGGTTC 1284
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1131 CACGAAATGGGCTATTAACAATGTCTCTCTAGTGACTCCGGCAACGCCATATCTCGGTTC 1190
Query 1285 GGTTAAATACAACTTGAAACTCGGATTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1344
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 GGTTAAATACAATTTGAAACTCGGGTTTAACCGGAAATCGCCGCCGAGGAGTTACCGTAT 1250
Query 1345 GGATTACGATATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGAATATA 1404
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1251 GGATTACGACATTATGAATCCACCGCCGTTTCCTAACACCACTACAGGAAACGGGATTTA 1310
Query 1405 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCTAACGTTTTAAAAGG 1464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1311 CGTTTTCCCGTTTAATGTAACGGTCGACGTGATTATCCAAAACGCAAACGTTTTAAAAGG 1370
Query 1465 TATTGTTAGTGAGATTCATCCATGGCATCTTCACGGTCACGATTTCTGGGTTTTGGGTTA 1524
| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1371 TGTAGTCAGTGAGATTCATCCATGGCATCTTCACGGTCACGACTTCTGGGTTTTGGGTTA 1430
Query 1525 CGGTGACGGGAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAATCCGCC 1584
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1431 CGGTGATGGAAAATTTAAACCGGGAATTGATGAGAAGACGTATAATTTGAAGAACCCGCC 1490
Query 1585 GTTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGATAAGGTTTGTGACGGA 1644
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1491 ATTACGGAATACGGCGATTTTGTATCCGTATGGATGGACGGCGTTAAGGTTTGTAACGGA 1550
Query 1645 TAATCCAGGGGTTTGGTTTTTTCATTGTCACATTGAACCGCATTTGCATATGGGAATGGG 1704
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1551 TAATCCAGGGGTTTGGTTTTTTCATTGCCATATTGAACCGCATTTGCATATGGGTATGGG 1610
Query 1705 TGTGGTTTTCGCGGAGGGATTAAACCGTATTGGTAAGGTACCTGATGAGGCGTTGGGTTG 1764
||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 1611 TGTGGTTTTCGCGGAGGGATTGAACCGGATTGGTAAGATACCTGATGAGGCGTTGGGTTG 1670
Query 1765 TGGTTTAACCAAGCAATTTCTCATGAACCGGAACCGCAATTGATTTAGTAAGGTATGACG 1824
|||||||||||||||||| |||||||||||||||| | | ||| | | | ||||
Sbjct 1671 TGGTTTAACCAAGCAATTCCTCATGAACCGGAACC--A-TA-ATT-A--A---T--GACG 1718
Query 1825 GCATTTGAGTGTG--CTTTTTTGTTTTGTGGTTGTGTTCGGTATGTTGTCAACCGAAGAT 1882
||||||||||||| ||||| ||||||| | |||||||| |||| |||| ||||||||||
Sbjct 1719 GCATTTGAGTGTGTGCTTTTCTGTTTTG-G-TTGTGTTCCGTATATTGTAAACCGAAGAT 1776
Query 1883 TGGTTCATGTTATTGGTATAGTTGGTTAGTTGGTTA 1918
|||||||||||||||||||||||||| ||| |||||
Sbjct 1777 TGGTTCATGTTATTGGTATAGTTGGTAAGTCGGTTA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84293712185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5