BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21120.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351206 jgi|Araly1|351206|fgenesh1_pg.C_scaffold_6001799 2060 0.0
> Ahg351206 jgi|Araly1|351206|fgenesh1_pg.C_scaffold_6001799
Length=1461
Score = 2060 bits (1115), Expect = 0.0
Identities = 1352/1466 (92%), Gaps = 18/1466 (1%)
Strand=Plus/Plus
Query 112 TGTGCGATGATCTGAGTAGTGATGAGGAAATGGAAATAGAGGAGCTTGAGAAGAAGATCT 171
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 TGTGCGATGATCTGAGTAGTGATGAAGAAATGGAAATAGAGGAGCTTGAGAAGAAGATCT 61
Query 172 GGAGAGACAAGCAGCGTTTAAAGCGGCTCAAGGAAATGGCGAAGAACGGTCTAGGAACAA 231
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 62 GGAGAGACAAGCAGCGTTTAAAGCGGCTCAAGGAAATGGCGAGGAACGGTGTAGGAAAAA 121
Query 232 GATTGTTGTTGAAGCAGCAACATGATGATTTTCCAGAGCACTCTAGTAAGAGAACCATGT 291
||||| ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||
Sbjct 122 GATTGATGTTGAAGCAGCATCATGATGATTTTCCAGAGCATTCGAGTAAGAGAACGATGT 181
Query 292 ACAAGGCACAAGATGGGATCTTGAAGTACATGTCGAAGACAATGGAGCGATATAAAGCTC 351
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 182 ACAAGGCACAAGATGGGATCTTGAAGTACATGTCTAAGACAATGGAGCGATGCAAAGCTC 241
Query 352 AAGGTTTTGTTTATGGGATTGTGTTAGAGAATGGGAAAACGGTAGCGGGATCTTCTGATA 411
||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 242 AAGGTTTCGTTTACGGGATCGTTTTAGAGAACGGGAAAACGGTAGCGGGATCTTCTGATA 301
Query 412 ATCTCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGATAGGAACGGCCCAGCTGCTATAA 471
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 302 ATCTCCGTGAATGGTGGAAAGACAAAGTGAGGTTTGACAGGAACGGACCAGCTGCTATAA 361
Query 472 TCAAGCACCAAAGGGATATCAATCTTTCTGATGGAAGTGATTCAGGGTCTGAGGTTGGGG 531
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCAAGCACCAGCGGGATATCAATCTTTCTGATGGAAGTGATTCAGGGTCTGAGGTTGGGG 421
Query 532 ATTCTACCGCACAGAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTTATCGG 591
| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AATGTACCGCGCATAAGTTGCTTGAGCTTCAAGATACTACTCTTGGAGCTCTGTTATCGG 481
Query 592 CTCTGTTTCCTCACTGCAACCCTCCTCAGAGGCGGTTTCCGTTGGAGAAAGGCGTGACAC 651
||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 482 CTCTGTTGCCTCACTGCAAGCCTCCTCAAAGGCGGTTTCCTTTGGAGAAAGGCGTGACAC 541
Query 652 CGCCATGGTGGCCAACGGGGA-AAGAAGATTGGTGGGATCAACTGTCTTTACCCGTTGAT 710
| |||||||||||||| || | ||||||||||||||||||||||||||||||||| |||
Sbjct 542 CACCATGGTGGCCAACAGG-ACAAGAAGATTGGTGGGATCAACTGTCTTTACCCGAGGAT 600
Query 711 TTTCGAGGTGTTCCGCCACCTTACAAGAAGCCTCATGATCTCAAGAAGCTGTGGAAAATT 770
|||||||| || | |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 601 TTTCGAGGACTTTCTCCACCTTACAAGAAGCCTCATGATTTGAAGAAGCTGTGGAAAATT 660
Query 771 GGTGTTTTGATTGGTGTAATCAGACATATGGCTTCTGACATTAGCAACATACCCAATCTC 830
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 661 GGTGTATTGATTGGTGTAATCAGACATATGGCTTCAGACATTAGCAACATACCGAATCTC 720
Query 831 GTGAGACGGTCTAGAAGTTTGCAGGAGAAAATGACGTCAAGAGAAGGCGCTTTATGGCTC 890
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 721 GTGAGACGGTCTAGAAGTTTGCAGGAGAAAATGACTTCAAGAGAAGGTGCTTTATGGCTC 780
Query 891 GCTGCTCTTTACCGAGAAAAGGCTATTGTTGATCAAATAGCCATGTCTAGAGAAAACAAC 950
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 781 GCTGCTCTCAACCGAGAAAAGGCTATTGTTGATCAAATAGCTTTCTCTAGAGAAAACAAC 840
Query 951 AACACTTCTAACTTTCTTGTTCCTGCAACCGGTGGAGACCCAGA-TGTTTTGTTTCCTGA 1009
||||||| ||||||||||||||||||||||||||| ||| | || | |||| ||||||||
Sbjct 841 AACACTTGTAACTTTCTTGTTCCTGCAACCGGTGGCGACAC-GAATCTTTTATTTCCTGA 899
Query 1010 ATCTACAGACTATGATGTTGAACTGATTGGTGGCAC-TCATCGGACCAATCAGCAGTATC 1068
||| || | |||||||||||| ||||||||||| | | |||||| ||||||||||||||
Sbjct 900 GTCTGCAAATTATGATGTTGAAGTGATTGGTGGCTCGT-ATCGGATCAATCAGCAGTATC 958
Query 1069 CTGAATTTGAAAACAACTACAACTGTGTTTACAAGAGAAAGTTTGAAGAAGATTTTGGGA 1128
||||||||||||||||||| || |||||| ||||||| ||||||||||| || |||||||
Sbjct 959 CTGAATTTGAAAACAACTATAATTGTGTTAACAAGAGGAAGTTTGAAGAGGAATTTGGGA 1018
Query 1129 TGCCAATGCATCCAACACTCCTAACATGTGAGAACAGTCTCTGTCCTTATAGCCAACCAC 1188
| ||||||| || | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1019 TATCAATGCAACCGATACTCCTAACATGTGAGAATAGTCTCTGTCCTTATAGCCAACCAC 1078
Query 1189 ATATGGGATTTCTTGACAGGAACTTAAGAGAGAATCACCAAATGACTTGTCCTTATAAAG 1248
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1079 ATATGGGATTTCATGACAGGAACTTAAGAGCGAATCACCAAATGACTTGTCCTTACAAAG 1138
Query 1249 TCACTTCCTTCTACCAACCAACTAAACCCTATGGTATGACGGGTTTAATGGTTCCTTGTC 1308
||||||||||||||||||| |||||||||||||| ||| | |||||||||||||||| ||
Sbjct 1139 TCACTTCCTTCTACCAACCCACTAAACCCTATGGCATGGCCGGTTTAATGGTTCCTTTTC 1198
Query 1309 CGGATTATAACGGGATGCAGCAGCAGGTTCAGAGCTTTCAAGACCAGTTTAATCATCCCA 1368
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1199 CGGATTATAACCGGATGCAGCAGCAGGTTCAGAGCATTCAGGACCAGTTTAATCATCCCA 1258
Query 1369 ACGATCTCTACAGACCAAAAGCTCCACAAAGAGG---CAAC---GATGACTTGGTTGAGG 1422
|| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 1259 ACAATCTCTACAGACCAAAAGCTCCACAAACAGGAAGCAACAACGATGACTTGGTTGAGG 1318
Query 1423 ATTTGAATCCTTCTCCTTCGACGCTGAATCAGAATCTTGGTTTAGTCTTACCTACTGACT 1482
|||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTTGAGTCCT-C-C-TTCGACGCTGAATCAGAATCTTGGTTTAGTCTTACCTACTGACT 1375
Query 1483 TCAATGGAGGTGAGGAAACAGTAGGAACAGAGAACAA---TCTGCATAATCAAGGGCAAG 1539
||||||| | || |||||||||||||| |||||||| || ||| ||||||| |||||
Sbjct 1376 TCAATGGCGATGTGGAAACAGTAGGAATGGAGAACAACAATCAGCAGAATCAAGAGCAAG 1435
Query 1540 AGTTGCCCACATCTTGGATTCAGTAA 1565
||||| ||||||||||||||||||||
Sbjct 1436 AGTTGTCCACATCTTGGATTCAGTAA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5