BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21130.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489023 jgi|Araly1|489023|fgenesh2_kg.6__2157__AT5G21130.1 1188 0.0
> Ahg489023 jgi|Araly1|489023|fgenesh2_kg.6__2157__AT5G21130.1
Length=945
Score = 1188 bits (643), Expect = 0.0
Identities = 859/961 (89%), Gaps = 24/961 (2%)
Strand=Plus/Plus
Query 51 AAAATGACGGTCGAGAAACCACAAGAAATGACCGGCGATACAAACTCCGACGGATTCCTA 110
|||||||| |||||||||||| ||||||||||||||||||| ||||||| || ||| ||
Sbjct 1 AAAATGACCGTCGAGAAACCAAAAGAAATGACCGGCGATACCAACTCCGGCGAATTTGTA 60
Query 111 ACTAACAAAGACGTTCACAGAATAAAGCATCCATCGCTAGATACCAACGATAGTTCCTCC 170
|||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 61 ACTAACAAAGACGTCCACAGAATAAAGCATCTATCGATAGATACCAACGATAGTTCTTCG 120
Query 171 AGCCGATACTCCGTCGATTCTCAGAAATCAAGAATAGGACCACCGCCTGGGACTTACGTC 230
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||
Sbjct 121 AGCCGATACTCCGTCGATTCTCAAAAACCAAGAATCGGACCACCGCCTGGGACTTACATC 180
Query 231 ATCAAACTCCCTAAGGATCAGATCTACCGTGTTCCTCCACCGGAAAATGCTCACCGTTAC 290
||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 181 ATCAACCTCCCTAAGGATCAGATCTACCGCGTTCCCCCGCCGGAAAATGCTCACCGTTAC 240
Query 291 GAGTATCTCTCTCGCCGGAAAACAAA-CAAATCGTGTTGCCGGCGATGTTTATGCT-ATT 348
|||||||||||||||||||||||||| | ||||| ||||||||||||||| || | |||
Sbjct 241 GAGTATCTCTCTCGCCGGAAAACAAATC-AATCGAATTGCCGGCGATGTTTCTG-TCATT 298
Query 349 CCCTCTCTGCTTTACTCATCATTATCGTCCTCGCAGCGATTGCCTTCGG-ATTCTTCTAC 407
|||| |||||||||| ||| || || |||||||||| | | | |||| || ||| |||
Sbjct 299 TCCTCGCTGCTTTACTTATCCTTCTCTTCCTCGCAGCTCTCGTCGTCGGAATCCTT-TAC 357
Query 408 CTCGTTTACCAGCCGCATAAGCCACAG-TTCTCCGTGAGTGGAGTCTCCGTCACCGGAAT 466
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 358 CTCGTTTACCAGCCGCATAAGCCA-AGATTCTCCGTGAGTGGAGTCTCCGTCACCGGAAT 416
Query 467 CAACCTGACGTCATCTTCTCCGTTTTCTCCGGTGATCAGAATCAAGTTGCGA-TCTCAGA 525
||| ||||||||||||||||| || |||||||||||| |||||||| ||| | |||||||
Sbjct 417 CAATCTGACGTCATCTTCTCCATTATCTCCGGTGATCGGAATCAAGGTGC-AGTCTCAGA 475
Query 526 ACGTTAAAGGTAAACTCGGTTTGATATACGAGAAAGGAAATGAGGCTGACGTGTTTTTTA 585
||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 476 ACGTTAACGGTAAACTCGGTTTGATCTACGAGAAAGGAAATGAGGCTGAC--GTTTTTTA 533
Query 586 --ACGGAACCAAACTTGGGAACGGCGAGTTCACGGCGTTTAAGCAGCCGGCGGGTAATGT 643
||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 534 CGGCGGAATCAAACTTGGTAACGGTAAGTTCACGGCGTTTAAGCAGCCGGCGGATAATGT 593
Query 644 AACGGTGATCGTGACGGTGTTAAAGGGATCGAGTGTTAAGTTAAAGAGCTCGTCGCGTAA 703
||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 594 GACGGTGATCGTGACGGTGTTAAAGGGATCGAGTATTCAGTTAACGAGCTCGTCGCGTAA 653
Query 704 AGAGTTAACGGAATCGCAGAAGAAAGGAAAAGTGCCGTTTGGTCTCAGAATTAAAGCGCC 763
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGAGTTAAAGGAATCGCATAAGAAAGGAAAAGTGCCGTTTGGTCTCAGAATTAAAGCGCC 713
Query 764 GGTTAAGTTTAAGGTTGGCTCCGTTACAACGTGGACGATGACCATTACGGTGGATTGCAA 823
||||||||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||
Sbjct 714 GGTTAAGTTTAAGGTTGGCGCCGTTACGACGTGGACTATGACCGTGACGGTGGATTGCAA 773
Query 824 AATAACAGTGGATAAGTTAACGGCGTCAGCAACTGTGAAGACGGAAAATTGCGAAACGGG 883
||||| |||||| ||||||||||| |||||||||||| |||||||| ||||| |||||
Sbjct 774 AATAAAAGTGGACAAGTTAACGGCATCAGCAACTGTGGTCACGGAAAACTGCGATACGGG 833
Query 884 CTTGAGCCTGTTGTAAAATTTGAGCTAGTTTTGTTTATGCCTTGATGGGCTTTG-TTCGA 942
|||||| ||||||| || |||||| |||||||||||||||| | | || || | |||||
Sbjct 834 CTTGAGTCTGTTGTGAATTTTGAGTTAGTTTTGTTTATGCCAAGTTTGG-TTCGGTTCGA 892
Query 943 ATTATGTTATTTTTAGTTTGTTTGATTCAATATATATTTTTGAATTAAAATTGAAATTTG 1002
||||||||||| ||||||||||| | | | | |||||| ||| |||||||||||||||
Sbjct 893 ATTATGTTATTATTAGTTTGTTT-A---A-T-T-TATTTT-GAACTAAAATTGAAATTTG 944
Query 1003 C 1003
|
Sbjct 945 C 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5