BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21140.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489024 jgi|Araly1|489024|fgenesh2_kg.6__2158__AT5G21140.1 1779 0.0
Ahg914187 jgi|Araly1|914187|Al_scaffold_0001_4441 817 0.0
> Ahg489024 jgi|Araly1|489024|fgenesh2_kg.6__2158__AT5G21140.1
Length=1245
Score = 1779 bits (963), Expect = 0.0
Identities = 1169/1263 (93%), Gaps = 36/1263 (3%)
Strand=Plus/Plus
Query 54 AAACCCTAGCTTTTTCATACTGTGAAATTACGGAGGTCTCTAAGGATGGCATCGCTAAGC 113
|||||||| ||||||||||| ||||||||||||||| ||| ||||||| ||||||||||
Sbjct 1 AAACCCTAACTTTTTCATACGGTGAAATTACGGAGG--TCTGAGGATGGTATCGCTAAGC 58
Query 114 TGGAAGCACCATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAA 173
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGGAAGCACCACACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAA 118
Query 174 TTTCACTCAATCTTCACCGCCGTCACCGGCAGAAACCCAGTAACTGTTaaaaaaaTATTT 233
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 119 TTTCACTCAATCTTCACCGGCGTCACCGGCAGAAACCCAGTAACTGTTAAAAAGACATTT 178
Query 234 GACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCT 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCT 238
Query 294 TGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAATGTGGCTGATGAT 353
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 239 TGTAGAGATCAGTATGATGGTCAAGTTTGTTATGGAGTCGTTAACAATGTCTCTGATGAT 298
Query 354 CAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTT-TTTAAAGGCATTAT 412
|||||||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||
Sbjct 299 CAATCCAAACTCGGGACTAAATATTCTGTTCCGCAGATCGC-TTTCTTTAAAGGCGTTAT 357
Query 413 AGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAA 417
Query 473 TATTCGATTGGAGAATCAGATATCAAGTGAAGCCAGCAGCAGTCAACAGCAAGTCCCTCC 532
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 TATCCGATTGGAGAATCAGATATCAAGTGAAGCCAGCAGTAGTCAACAGCAAGTCCCTCC 477
Query 533 TGCTTTCAAGAACTTTTCAATGACACAAAAGGAAAAAACTCTCGATGAACTTGTAAGGGA 592
|||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 478 TGCTTTCAGGAACTTTTCGATGTCGCAAAAGGAAAAAACTCTCGATGAACTTGTAAGGGA 537
Query 593 CAAGTGGCTGTGCCGCACAAGAGAGAGAAACATTGGACTTGGTATAAGATCTCTTCTTGA 652
||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 538 CAAATGGCTGTGTCGCACAAGAGAGGGCAACATCGGACTTGGTATAAGATCTCTTCTTGA 597
Query 653 CCTTCGCAGTTGGTTCAGAAACAATGATGTTCCTTCCTGTGAGGTCTGCAATGAAGCTGG 712
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 CCTGCGCAGTTGGTTCAGGAACAATGATGTTCCTTCCTGTGAAGTCTGCAATGAAGCTGG 657
Query 713 AGTAAAGGCAGATTTGTGTCCAACCGAAGGTTGCCCTGTCCGGATACACAAGTACTGCCT 772
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 AGTAAAGGCGGATTTGTGTCCAACCGAAGGTTGCACTGTCCGGATACACAAGTACTGCCT 717
Query 773 CAAAAAATTGTTATCTCAAAGGGATGATAAACGTTGCTCTGGTTGCGGGAAGCCATGGCC 832
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 CAAAAAATTGTTATCTCAAAGGGATGATAAACGTTGCTCTGGTTGTGGGAAGCCATGGCC 777
Query 833 CTTGAGTAAAATTACAAAAACAGAAGCTGCTGAAGAAGCAATGAATGATGAAGAGGAAAG 892
|||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||
Sbjct 778 TTTGAGTAAAATTACAAAAGCAGAAGCTGCTGACGAAGCAATGAATGAGGAGGAGGAAAG 837
Query 893 CGAGACTCAAGCAACAGCTCCAAAAGCCAAAAGAAGAAGACAAC--AG----C--G-AGA 943
|||||||||||| ||||||||||| ||||||||| |||||||| || | | |||
Sbjct 838 CGAGACTCAAGCCGCAGCTCCAAAATCCAAAAGAAAAAGACAACTTAGGAGTCATGGAGA 897
Query 944 CTCAACTGAAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAATA-CGA 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 898 GTCAACTGAAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAA-AGCGA 956
Query 1003 GAAGAGTAACCCGTAGCGTTGGGCACTCGAGGTAAAAAA--CCGTTTAAGAACTCCGGTT 1060
|||||||||||||||||| || ||||||| |||||||| || ||||||||||| ||||
Sbjct 957 GAAGAGTAACCCGTAGCG--GG-CACTCGATGTAAAAAAAACCATTTAAGAACTCTGGTT 1013
Query 1061 TTAGGGCTTAGATGTATATTTTGATGGCCGTTCTATGTCCAAACATCACTAGAAGTTTGG 1120
|||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 1014 TTAGGGATTAGATGTATATTTTGACGACCGTTCTATGTCCAAACATCACTGGAAGTTTGG 1073
Query 1121 TATGATCTGATGCTTTCTCTTGTGGATCATTAATGGAGTCATGGAGTGTTAAAATATATT 1180
| |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 TCTGATCTGATGTTTTCTCTTGTGGATCATTGATGGAGTCATGGAGTGTTAAA------- 1126
Query 1181 TAAACTCCTCGGTTAAAGTCTACAATATATTTAAATTTTAATTCCGAGAATTT-ATACTA 1239
||||||||||||||||||||| |||| |||||||||| |||||||||| || |||
Sbjct 1127 ----CTCCTCGGTTAAAGTCTACAACATATCTAAATTTTAAACCCGAGAATTTGATGCTA 1182
Query 1240 AAATGTGATTTTGTCCTTTGTGCatttaactaa--aa--ttcaaatgaacttataaatgt 1295
|| |||||||||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1183 AATTGTGATTTTGTCCTTTGTGCATTTAACTAACTAAAATTCAAATGAACTTATAAAAGT 1242
Query 1296 aaa 1298
|||
Sbjct 1243 AAA 1245
> Ahg914187 jgi|Araly1|914187|Al_scaffold_0001_4441
Length=930
Score = 817 bits (442), Expect = 0.0
Identities = 675/786 (86%), Gaps = 21/786 (3%)
Strand=Plus/Plus
Query 99 ATGGCATCGCTAAGCT-GGAAGCACCATACCCTAATTC-AGGCTTTGATTTCACGAGGTC 156
|||||| |||| | || || ||||||| || || | || | ||||||||||||| ||||
Sbjct 1 ATGGCACCGCT-ATCTCGGGAGCACCAGACGCT-ACTCGATGCTTTGATTTCACTCGGTC 58
Query 157 CTCTCAAGGAGAAAGAATTTCAC-TCAATCTTCACC-GCCGTCACCGGCAGAAACCCAGT 214
|||||||||||| ||||||| | |||||||| ||| | || || ||||||||||| ||
Sbjct 59 CTCTCAAGGAGACAGAATTT-GCTTCAATCTTAACCAG-CGCCATCGGCAGAAACCTAGG 116
Query 215 AACTGTTaaaaaaaTATTTGA--C-AAGTACCTTCTTGAGATAAACAAGGAACTCTCATA 271
| || |||||| |||||||| | ||| ||||| ||||||||||| |||||| |||||
Sbjct 117 AGTTGCTAAAAACATATTTGACTCTGAGTTCCTTCGTGAGATAAACACGGAACTGTCATA 176
Query 272 TGTTCACTTTGAGTTGAAG-GCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAG 330
|||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 177 TGTTCACTCTGAGTTG-AGATCTTGTAGAGATCAGTACGATGGCCAAGTTTGTTATGGAG 235
Query 331 TCGTTAACAATGTGGCTGATGATCAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGA 390
| ||||||||||| ||||||| |||||||| |||||||| ||| |||| ||||| ||||
Sbjct 236 TGGTTAACAATGTATCTGATGAGCAATCCAATCTCGGGACAAAAGATTCGGTTCCTCAGA 295
Query 391 TTGCATTTTTTAAAGGCATTATAGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCA 450
||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 296 TTGCATTCTTTAAAGGCATTATAGAAGAAATTGCACAGGCTGAACCTGCTCAAGGTTGCA 355
Query 451 TATCGAGCTTTGATGCTCTTAATATTCGATTGGAGAATCAGATATCAAGTGAAGCCAGCA 510
||||||||||||||||||| ||||| ||||| ||||||||| || |||||||||||||||
Sbjct 356 TATCGAGCTTTGATGCTCTCAATATCCGATTCGAGAATCAGTTACCAAGTGAAGCCAGCA 415
Query 511 GCAGTCAACAGCAAGTCCCTCCTGCTTTCAAGAACTTTTCAATGACACAAAAGGAAAAAA 570
||| ||||||||||||||||||||| ||| ||||||||||||| | ||||| || |||
Sbjct 416 GCAATCAACAGCAAGTCCCTCCTGCATTCCTGAACTTTTCAATGTCGCAAAAAGAGGAAA 475
Query 571 CTCTCGATGAACTTGTAAGGGACAAGTGGCTGTGCCGCACAAGA-GAGAGAAACATTGGA 629
| ||| | |||||||| |||||||| |||||||||| | ||| | ||| ||||||| |||
Sbjct 476 CACTCAAAGAACTTGTTAGGGACAAATGGCTGTGCCACCCAA-ATGAGGGAAACATCGGA 534
Query 630 CTTGGTATAAGATCTCTTCTTGACCTTCGCAGTTGGTTCA-GAAACAATGATGTTCCTTC 688
|||||||||||| |||||||||| || ||||||||||||| ||| ||||||| |||||||
Sbjct 535 CTTGGTATAAGAACTCTTCTTGATCTGCGCAGTTGGTTCAAGAA-CAATGATATTCCTTC 593
Query 689 CTGTGAGGTCTGCAATGAAGCTGGAGTAAAGGCAGATTTGTGTCC-AACCGAAGGTTGCC 747
||| ||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||
Sbjct 594 CTGCGAGGTCTGCAATGAATTTGGAGTAAAGGCGGATTTGTGTCCTAAC-GAAGGTTGCA 652
Query 748 CTGTCCGGATACACAAGTACTGCCTCAAAAAATTGTTATCTC-AAAGGGATGATAAACGT 806
||||||||||||||| ||||||||| | | | |||| ||||| ||||| ||| ||| | |
Sbjct 653 CTGTCCGGATACACATGTACTGCCTGAGAGACTTGTCATCTCCAAAGG-ATGTTAATCTT 711
Query 807 TGCTCTGGTTGCGGGAAGCCATGGCCCTTGAGTAAAATTACAAAAACAGAAGCTGCTGAA 866
|||||||||||||||||||||||||| ||| ||| ||||| ||| |||||||| ||||
Sbjct 712 TGCTCTGGTTGCGGGAAGCCATGGCCTTTGGGTACCATTACGAAAGTAGAAGCTGTTGAA 771
Query 867 GAAGCA 872
||||||
Sbjct 772 GAAGCA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5