BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21150.1
Length=3018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1 4368 0.0
Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704 1035 0.0
> Ahg489025 jgi|Araly1|489025|fgenesh2_kg.6__2159__AT5G21150.1
Length=2940
Score = 4368 bits (2365), Expect = 0.0
Identities = 2764/2953 (94%), Gaps = 42/2953 (1%)
Strand=Plus/Plus
Query 8 ACAAACAAACCCTttcttcttcctctcataatccctctctctcttcttctctctcgctcg 67
|||||||||||||||||||||||||||||||| |||||| | || ||||| ||||||||
Sbjct 1 ACAAACAAACCCTTTCTTCTTCCTCTCATAAT--CTCTCTTTTTTTTTCTCGCTCGCTCG 58
Query 68 ctgctctgtttagggtttttctcgttcgtctcttctATAAGTACT--AGAGATGGATTCT 125
|||||||||||||||||||| |||||| | ||| | | ||||| |||||||| ||||
Sbjct 59 CTGCTCTGTTTAGGGTTTTT-TCGTTCCT-TCTGATTTTTGTACTCCAGAGATGGTTTCT 116
Query 126 GATGAACCGAATGGGA-----G---T-------GGA---TTACCACCTCCACCACCTTTC 167
||||||||||||||| | | ||| |||||||||||||||||| ||
Sbjct 117 AATGAACCGAATGGGAGTGGCGTAATGCAAAAGGGAGGGTTACCACCTCCACCACCTGTC 176
Query 168 GTTCCAGCAAATCTTGTCCCTGAAGTGGAGCCTGTAAAAAAGAACATTCTTCTCCCAATG 227
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTTCCAACAAATGTTGTCCCTGAAGTGGAGCCTGTAAAAAAGAACATTCTTCTCCCAATG 236
Query 228 GCTCGGCCTCGAGGCAGCGGCTCCAAAGGACAGAAGATTCCTCTTCTTACTAATCACTTT 287
||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCTCGGCCTAGAGGCAGTGGTTCCAAAGGACAGAAGATTCCTCTTCTTACTAATCACTTT 296
Query 288 GGAGTCAAGTTCAACAAACCAAGCGGTTACTTCTTTCATTACAGTGTTGCTATC-AATTA 346
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 297 GGAGTCAAGTTTAACAAAGCAAGCGGTTACTTCTTTCATTACAGTGTTGCTATCTCA-TA 355
Query 347 TGAAGATGGCCGTCCAGTGGAGGCTAAAGGTATCGGCCGAAAGATTCTTGACAAAGTTCA 406
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 356 TGAAGATGGCCGTCCAGTGGAGGCTAAAGGTATTGGCAGAAAGATTCTTGACAAAGTTCA 415
Query 407 GGAGACCTATCAAAGTGATTT-GGGTGCCAAATACTTTGCTTATGATGGCGAGAAGACTC 465
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 416 GGAGACCTATCAAAGTGATTTGGGGT-CCAAATACTTTGCTTATGATGGCGAGAAGACTC 474
Query 466 TCTTCACTGTTGGTGCTCTTCCCAGCAACAAACTTGACTTCTCTGTTGTTCTTGAAGAAA 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 475 TCTTCACTGTTGGTGCTCTTCCCAGCAACAAACTTGACTTCTCTGTTGTTCTTGAAGACA 534
Query 526 TACCTTCTAGCAGAAATCACGCTGGAAATGATACAAATGATGCTGATAGAAAAAGATCAA 585
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 535 TACCTTCTAGCAGAAATAACGCTGGAAATGATACAAATGATGCGGATAGGAAAAGATCAA 594
Query 586 GGCGTCCCAACCAAACTAAGAAATTCATGGTTGAGATAAGTTATGCTGCAAAGATCCCCA 645
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGCGTCCCAACCAATCTAAGAAATTCATGGTTGAGATAAGTTATGCTGCAAAGATCCCCA 654
Query 646 TGCAGGCTATTGCAAGCGCTCTTCAAGGGAAGGAGACAGAGAATCTTCAAGACGCTCTGA 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 655 TGCAGGCTATTGCAAGCGCTCTTCAAGGGAAGGAGACAGAGAATCTTCAAGACGCTCTAA 714
Query 706 GAGTGCTGGATATTATTTTGCGCCAGAGTGCAGCTAGGCAAGGTTGCCTCCTTGTTCGCC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAGTGCTGGATATTATTTTGCGCCAGAGTGCAGCTAGGCAAGGTTGCCTCCTTGTTCGCC 774
Query 766 AGTCCTTTTTCCACAATGACGTAAAGAACTTTGTACCTATTGGTGGAGGTGTCAGTGGTT 825
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGTCTTTTTTCCACAATGACGTAAAGAACTTTGTACCTATTGGTGGAGGTGTCAGTGGTT 834
Query 826 GCAGAGGGTTCCATTCAAGTTTCAGAACTACTCAGGGAGGCTTATCCCTGAATATTGACA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCAGAGGGTTCCATTCAAGTTTCAGAACTACTCAGGGAGGCTTATCCCTGAATATTGACA 894
Query 886 CTTCAACTACGATGATAGTACAACCTGGACCTGTAGTTGATTTCCTGCTTGCTAACCAGA 945
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 895 CTTCAACTACGATGATTGTACAACCTGGACCTGTTGTTGATTTCCTGCTTGCAAACCAGA 954
Query 946 ACAAGAAAGATCCATACGGAATGGACTGGAACAAGGCTCGACGTGTCCTCAAGAATCTGA 1005
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 955 ACAAGAAAGATCCATACGGTGTGGACTGGAACAAGGCTCGTCGTGTTCTCAAGAATCTGA 1014
Query 1006 GAGTTCAAATTACTCTTTCCAATAGAGAATACAAGATAAGTGGACTAAGTGAACACAGCT 1065
|||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1015 GAGTTCAAGTTACTCTTTCAAATAGAGAATACAAGATAAGCGGGCTAAGTGAACACAGCT 1074
Query 1066 GCAAAGATCAACTATTTACATGGAGGAAACCTAACGACAAGGGAGAATTTGAGGAGGTTG 1125
||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1075 GCAAAGATCAAATGTTTACATGGAGGAAACCTAACGACAAGGGGGAATTTGAGGAGGTTG 1134
Query 1126 AGATCACAGTGCTCAATTACTATAAAGAGCGTAACATTGAAGTGCGTTATTCAGGTGACT 1185
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1135 AGATCACAGTGCTCAATTACTATAAAGAGCGTAGTATTGAAGTGCGATATTCAGGTGACT 1194
Query 1186 TCCCTTGCATCAATGTTGGTAAGCCGAAGCGTCCCACTTACTTCCCCATTGAGTTCTGTA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TCCCTTGCATCAATGTTGGTAAGCCGAAGCGTCCCACTTACTTCCCCATTGAGTTCTGTA 1254
Query 1246 ATCTTGTGTCTCTACAGCGATACACAAAATCGCTTACCAATTTTCAGAGGGCTGCCCTAG 1305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1255 ATCTTGTGTCTCTTCAGCGATACACAAAATCGCTTACCAATTTTCAGAGGGCTGCACTAG 1314
Query 1306 TTGAAAAGTCTAGGCAGAAGCCACCTGAAAGGATGGCCTCGCTAACCAAAGGTCTGAAGG 1365
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 1315 TAGAAAAGTCTAGGCAGAAGCCACCAGAAAGGATGGCCTCACTAACCAAAGGTCTAAAGG 1374
Query 1366 ACAGCAATTACAATGCCGACCCGGTATTGCAAGATAGTGGTGTTAGCATTATCACCAATT 1425
|||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 1375 ACAGCAATTATAATGCCGACCCGGTGTTGCAAGATAGTGGTGTCAGCATTATTACCAACT 1434
Query 1426 TTACCCAAGTTGAAGGCCGTATCTTACCAACACCAATGCTGAAAGTGGGCAAGGGAGAAA 1485
| ||||||||||||||||| |||||||||||||||| |||||||||||| || ||| |
Sbjct 1435 TCACCCAAGTTGAAGGCCGCATCTTACCAACACCAAAGCTGAAAGTGGGGAACGGACAGG 1494
Query 1486 ACCTTT-CCCCAATCAAAGGAAAATGGAACTTTA-T-GCGTAAGACACTCGCTGAGCCAA 1542
|| ||| |||||| ||| || |||||||||| | || | || ||| | ||||||||
Sbjct 1495 AC-TTTACCCCAAACAACGGGCGCTGGAACTTTAATAGC--AGGAAACTTGTTGAGCCAA 1551
Query 1543 CGACGGTTACTAGATGGGCTGTTGTGAACTTCTCTGCTCGCTGTGATACAAATACACTTA 1602
|||| |||||||||||||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct 1552 CGACTGTTACTAGATGGGCTGTTGTGAACTTTTCTGCTCGTTGTGATACAAATGCGCTTA 1611
Query 1603 TTCGTGACTTGATTAAATGTGGACGGG-AGAAAGGAATTAATGTAGAGCCTCCATTCAAG 1661
|||| |||||||||| |||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1612 TTCGCGACTTGATTAGATGTGGACAGTCA-AAAGGAATTAATGTAGAGCCTCCATTCAAG 1670
Query 1662 GATGTCATCAACGAGAATCCTCAGTTTAGGAATGCACCAGCTACTGTGAGAGTAGAGAAT 1721
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GATGTCATTAACGAAAATCCTCAGTTTAGGAATGCACCAGCTACTGTGAGAGTAGAGAAT 1730
Query 1722 ATGTTTGAGCAGATAAAATCCAAACTCCCAAAGCCGCCTCTGTTCCTTCTTTGCATACTC 1781
|||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1731 ATGTTTGAGCAGATAAAATCCAAACTCCCAGGGCAGCCTCTGTTCCTACTTTGCATACTC 1790
Query 1782 GCTGAAAGGAAAAACTCTGATGTTTATGGCCCTTGGaaaaaaaaGAATCTTGTTGATCTT 1841
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TCAGAAAGGAAAAACTCTGATGTTTATGGCCCTTGGAAAAAAAAGAATCTTGTTGATCTT 1850
Query 1842 GGAATTGTGACTCAGTGCATTGCTCCCACCAGACTGAACGATCAGTATCTCACCAATGTT 1901
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1851 GGAATTGTGACTCAGTGCATTGCTCCCACAAGAGTGAACGATCAGTATCTCACCAATGTT 1910
Query 1902 CTCCTGAAGATAAATGCCAAGCTTGGTGGATTGAATTCGTTGTTAGCTATGGAGCGCTCA 1961
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1911 CTCCTGAAGATAAATGCCAAGCTTGGTGGATTGAATTCGCTGTTAGCAATAGAGCGCTCA 1970
Query 1962 CCAGCAATGCCAAAAGTAACGCAAGTTCCTACCATCATTGTTGGGATGGATGTATCCCAT 2021
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1971 CCAGCAATGCCAAAAGTAACGCAAGTTCCTACTATCATTGTTGGGATGGATGTATCCCAT 2030
Query 2022 GGTTCCCCTGGCCAGTCTGATATACCATCAATTGCTGCTGTTGTGAGCTCAAGACAATGG 2081
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 2031 GGTTCCCCTGGCCAGTCTGATATACCATCAATTGCAGCGGTTGTGAGCTCCAGACAATGG 2090
Query 2082 CCACTCATCTCAAAATATAAGGCATGTGTACGCACACAATCACGCAAAATGGAAATGATT 2141
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2091 CCACTCATCTCAAAATATAAGGCATGTGTACGCACACAATCGCGCAAAATGGAAATGATT 2150
Query 2142 GATAATCTCTTCAAACCCGTCAATGGCAAAGACGAAGGAATGTTCAGGGAACTCTTGTTA 2201
||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| |
Sbjct 2151 GATAATCTCTTCAAACCCGTCTCTGGCAAAGACGAAGGAATGTTCAGGGAGCTGTTGCTC 2210
Query 2202 GACTTTTACTACAGTTCAGAGAATAGGAAACCAGAGCACATCATTATTTTCAGGGATGGT 2261
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2211 GACTTTTACTACAGTTCTGAGAAGAGGAAACCAGAGCACATCATTATATTCAGGGATGGT 2270
Query 2262 GTAAGCGAGTCTCAGTTCAATCAAGTTCTTAATATTGAATTGGATCAGATGATGCAGGCA 2321
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 GTGAGTGAGTCTCAGTTCAATCAAGTTCTTAATATTGAATTGGATCAGATGATGCAGGCA 2330
Query 2322 TGCAAGTTTCTTGATGAT-ACGTGGCATCCGAAGTTTACAGTGATAGTTGCCCAGAAGAA 2380
|||||||||||||| || || ||| |||| |||||||||||||| ||||||||||||||
Sbjct 2331 TGCAAGTTTCTTGACGAACAC-TGGAATCCAAAGTTTACAGTGATCGTTGCCCAGAAGAA 2389
Query 2381 CCACCACACAAAGTTCTTCCAGTCTCGAG--GCCCTGATAATGTTCCTCCAGGAACAATC 2438
||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2390 CCACCACACCAAGTTCTTCCAGTC--GAGTCGCCCTGATAATGTTCCTCCAGGAACAATA 2447
Query 2439 ATTGACAGCCAGATCTGTCACCCACGCAACTTTGATTTCTATCTCTGCGCCCATGCTGGC 2498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2448 ATTGACAGCCAGATCTGTCACCCACGCAACTTTGATTTCTATCTCTGCGCCCATGCCGGC 2507
Query 2499 ATGATTGGAACTACAAGGCCAACACATTACCATGTTCTGTATGACGAGATTGGGTTTGCC 2558
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2508 ATGATTGGAACTACAAGGCCAACACATTACCATGTGCTGTATGACGAGATTGGATTTGCC 2567
Query 2559 ACAGACGACCTCCAAGAACTTGTGCATTCTCTGTCCTATGTCTACCAGAGGAGCACCACT 2618
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2568 ACAGATGACCTTCAAGAACTTGTGCATTCTCTATCCTATGTCTACCAGAGGAGCACTACT 2627
Query 2619 GCGATCTCAGTCGTTGCACCTGTATGTTACGCTCATTTGGCAGCTGCACAGATGGGAACT 2678
|||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 2628 GCGATCTCAGTCGTTGCACCAGTTTGTTATGCGCATTTGGCAGCTGCACAGATGGGAACT 2687
Query 2679 GTGATGAAGTATGAAGAGTTGTCTGAGACTTCTTCGAGCCATGGAGGAATCACCACACCT 2738
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2688 GTGATGAAGTATGAAGAGTTGTCTGAGACTTCTTCGAGCCATGGGGGAATCACCACACCC 2747
Query 2739 GGAGCAGTCCCTGTGCCACCTATGCCGCAGCTGCACAATAATGTTTCAACCTCCATGTTC 2798
||||||||||||||||| || |||||||||||| || |||| ||| ||||||||||||||
Sbjct 2748 GGAGCAGTCCCTGTGCCTCCCATGCCGCAGCTGAACGATAAAGTTGCAACCTCCATGTTC 2807
Query 2799 TTCTGTTGATGGAACATGGTCCAGTCCACACGATAGCTGAGTTTATATGCTTTTGATGGA 2858
||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||
Sbjct 2808 TTCTGCTGATGGAACATGGCCCAGTCCCCACGGTAGCTGAGTTTATATGCTTTTGATGGA 2867
Query 2859 GAACCAACGAACTTTTGTTTACTCTTCTCTGGGTTTGGTTCCTCTTTTGTTTTTCGTCGA 2918
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 2868 GAACCAACGAACTTTTGTTTACTCTTCTCTGGGTTCGATGCCTCTTTTGTTTTTCGTCGA 2927
Query 2919 CCCTTTAACATTG 2931
|||||||||||||
Sbjct 2928 CCCTTTAACATTG 2940
> Ahg326484 jgi|Araly1|326484|fgenesh1_pm.C_scaffold_6001704
Length=2547
Score = 1035 bits (560), Expect = 0.0
Identities = 1403/1798 (78%), Gaps = 106/1798 (6%)
Strand=Plus/Plus
Query 576 AAAAGATC-AAGGC-GTCCCAACCAAACTAAGAAATTC-ATGGTTG-AGATAAG-TTATG 630
|||||| | ||||| || | ||||| | ||||||||| || |||| | || || || ||
Sbjct 367 AAAAGA-CTAAGGCTTTCTC-ACCAATCCAAGAAATTCAAT-GTTGCA-ATCAGCTT-TG 421
Query 631 CTGCAAAGATCCCCATGCAGGCTATTGCAAGCGCTCTTCAAGGGAAGGAGACAGAGAATC 690
||||||| ||||| ||| | |||||||||| ||||||||||| ||||| ||| | ||
Sbjct 422 CTGCAAAAATCCCTATGAAAGCTATTGCAAATGCTCTTCAAGGAAAGGAAACAAACCATT 481
Query 691 TTCAAGACGCTCTGAGAGTGCTGGATATTATTTTGCGCCAGAGTGCAGCTAGGCAAGGTT 750
||||||| ||| | |||||| ||||| |||||||| |||| | ||||||| || ||||||
Sbjct 482 TTCAAGATGCTATCAGAGTGATGGATGTTATTTTGTGCCAAAATGCAGCTCGGAAAGGTT 541
Query 751 GCCTCCTTGTTCGCCAGTCCTTT-TTCCACAATGACGTAAAGAACTTTGTAC--CTATTG 807
||||||| |||||||| | |||| ||||||||||| | |||| || || ||| ||| |
Sbjct 542 GCCTCCTAGTTCGCCAAT-CTTTCTTCCACAATGATGCAAAGTAC-TT-TACGAATATCG 598
Query 808 GTGGAGGTG-TCAGTGGTTGCAGAGGGTTCCATTCAAGTTTCAGAACTACTCAGGGAGGC 866
||| ||||| | | | |||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 599 GTGAAGGTGTTGA-TTGTTGCAAAGGATTCCATTCAAGCTTCAGAACTACTCAGGGAGGC 657
Query 867 TTATCCCTGAATATTGACACTTCAACTACGATGATAGTACAACCTGGACCTGTAGTTGAT 926
|| ||||| |||||||| ||| ||||||||||||||| ||||||| ||||| |||| |
Sbjct 658 TTGTCCCTCAATATTGATGTTTCGACTACGATGATAGTAAAACCTGGTCCTGTTGTTGGT 717
Query 927 TTCCTGCTTGCTAACC-AGAACAAGAAAGATCCATACGGAATGGACTGGAACAAGGCTCG 985
|| || ||| |||| || ||||||||||| | || ||||||| ||||||
Sbjct 718 TTTCTTATTGGAAACCAAG-GTGTGAAAGATCCATTCTCTATTAACTGGAAAAAGGCTAA 776
Query 986 ACGTGTC-CTCAAGAATCTGAGAGTTCAAA-TTACT-CTTTCCAAT-AGAGAATACAAGA 1041
| || | ||||||||||| |||||| ||| | | | | || ||| | |||||||||||
Sbjct 777 AAGT-ACTCTCAAGAATCTTAGAGTT-AAAGTCA-TCCCCTCAAATCA-AGAATACAAGA 832
Query 1042 TAAGTGGACTAAGTGAAC-ACAGCTGCAAAGATCAACTATTTACATGGAGGAAACCTAAC 1100
||| |||||||||| || ||| ||||||||||||| | ||||| |||| |||| |||
Sbjct 833 TAACCGGACTAAGTGGACTACA-CTGCAAAGATCAAATGTTTACTTGGAAGAAAAAGAAC 891
Query 1101 GACAA-GGGAGAATTTGAGGAGGTTGAGATCACAGTGCTCAATTAC-T-A-TAAAGA-GC 1155
| || ||| ||| |||||||||||||||| |||||| | ||||| | | ||| | |
Sbjct 892 CAAAACGGG-GAAGTTGAGGAGGTTGAGATTACAGTGTTTGATTACTTCACCAAA-ATCC 949
Query 1156 GTAACATTGAAGTGCGTTATTCAGGTGACTTCCCTTGCATCAATGTTGGTAAGCCGAAGC 1215
|| |||| || ||| ||||||||||| ||| || || ||||||||||||||||| || |
Sbjct 950 GTGACATCAAACTGCATTATTCAGGTGGCTTACCATGTATCAATGTTGGTAAGCCAAATC 1009
Query 1216 GTCCCACTTACTTCCCCATTGAGTTCTGTAATCTTGTGTCTCTACAGCGATACACAAAAT 1275
|||| || ||||| ||||||||| ||||| | ||||| |||||||| || || || |||
Sbjct 1010 GTCCTACCTACTTTCCCATTGAGCTCTGTGAGCTTGTATCTCTACAACGCTATACTAAAG 1069
Query 1276 CGCTTACCAA-TTTTCAGAGG-GCTGCCCTAGTTGAAA-AGTCTAGGCAGAAGCCACCTG 1332
| |||| ||| |||||||||| | | ||| | | ||| | || ||||| || || | |
Sbjct 1070 CTCTTA-CAAGTTTTCAGAGGAG-TAACCTTG-TCAAAGAATCAAGGCAAAACCCTCATC 1126
Query 1333 AAAGGATGG-CCTCGCTAACCAAAGGTCTGAAGGACAGCAATTACAATGCCGACCCGGTA 1391
|||| |||| | | |||||| || ||| ||| |||| ||||| | || ||||| |
Sbjct 1127 AAAGAATGGAAGT-GTTAACCAGAGCTCTCAAGAACAGTAATTATAGTGATGACCCAATG 1185
Query 1392 TTGCAAG-ATAGTGGTGTTAGCATTA-TCACCAATTTTACCCAAGTTGAAGGCCG-TATC 1448
||||||| || |||||||||| | || | | | || || ||||| ||||| || | |
Sbjct 1186 TTGCAAGAAT-GTGGTGTTAG-AATAGGCTCTGACTTCACTCAAGTCGAAGGTCGCT-TG 1242
Query 1449 TTACCAACA-CCAATGCTGAAAG-TGGGCAAGGGAGAA-A-ACCTTTCCCCAATCAAAGG 1504
||||||||| |||| ||| |||| | ||||| | | || | | || | || || || ||
Sbjct 1243 TTACCAACACCCAA-GCTTAAAGCT-GGCAATGAACAAGACATCTAT-CCTAA-GAATGG 1298
Query 1505 AAAATGGAACTT-TATGCGTAAGACACTCGCTGAGCCAACGACGGTTACTAGATGGGCTG 1563
|||||||| || |||| | | |||| || | || |||||||||||||| |
Sbjct 1299 GCGTTGGAACTTCAAT-AACAAGATAGTTTTTGAGTCAGCAACAGTTACTAGATGGGCCG 1357
Query 1564 TTGTGAACTTCTCTGCTCGCTGTGA--TACAAATACACTTATTCGTGACTTGATTAAATG 1621
||||||||||||||||||||||||| | | | | || ||||||| ||||| | |||
Sbjct 1358 TTGTGAACTTCTCTGCTCGCTGTGACCCGCGCA-AGA-TTGTTCGTGATTTGATCAGATG 1415
Query 1622 TGGACGGGA-GAAAGGAATTAATGTAGAGCCTCCATTCAAGGATGTC-ATCAACG-AGAA 1678
|||| | |||||||||||| ||||| ||||||| ||| | |||| | || | || |
Sbjct 1416 TGGA-AATATGAAAGGAATTAACGTAGATCCTCCATACAAAGTTGTCTTTGAA-GAAG-A 1472
Query 1679 TCCTCAGTTT-AGGAATGCACCAGCTACTGTGAGAGTAGAGAATATGTTTGAGCAG-ATA 1736
|||||||||| ||| ||||||||| | |||| ||||| || || |||||||| | | ||
Sbjct 1473 TCCTCAGTTTAAGG-ATGCACCAGGTTCTGTAAGAGTTGAAAAGATGTTTGAAC-GTTTA 1530
Query 1737 AAATCCAAACTC-CCAAAG--CCGCC-TCTGTTCCTTCTTTGCATACTCGCTGAAAGGAA 1792
|||||| |||| | | || || | |||||||| |||||||| | |||| |||
Sbjct 1531 GAATCCACACTCGGTGACGTTCCTCCAAAT-TTCCTTCTATGCATACT--C-GAAAAGAA 1586
Query 1793 AAACTCTGATGTTTATGGCCCTTGGaaaaa-aaaGAATCTTGTTGATCTTGGAATTGTGA 1851
|||||||||||||||||| ||||||||||| ||| ||||||||| | ||||||||||||
Sbjct 1587 AAACTCTGATGTTTATGGTCCTTGGAAAAAGAAA-AATCTTGTTCAAGTTGGAATTGTGA 1645
Query 1852 CTCAGTGCATTGCT-C-CCACCAGAC-TGAACGATCAGTATCTCACCAATGTTCTCCTGA 1908
|||||| |||||| | || | | || | || ||||| |||||||| ||||||||||| |
Sbjct 1646 ATCAGTGTATTGCTCCTCCTCAAAACGTTAATGATCATTATCTCACAAATGTTCTCCTCA 1705
Query 1909 AGATAAATGCCAAGCTTGGTGGATTGAATTC-GTTGTTAGCTATGGAGCGCTCACCAGCA 1967
||||||||||||||||||||||||||||||| || ||| | ||||||||| |||| |||
Sbjct 1706 AGATAAATGCCAAGCTTGGTGGATTGAATTCAGT-GTTGGATATGGAGCGGTCACGGGCA 1764
Query 1968 ATGCCAAAAGTAACGCAAGTTCCTACCATCATTGTTGGGATGGATGTATCCCATGGTTCC 2027
||||| |||| | ||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1765 ATGCCTTTGGTAATGAAAGTTCCTACCATCATTATTGGGATGGATGTATCTCATGGTTCT 1824
Query 2028 CCTGGCCAGTCTGATATACCATCAATTGCTGCTGTTGTGAGCTCAAGACAATGGCCACTC 2087
||||| ||||||||| ||||||| ||||| || ||||||||||| ||| ||||||||||
Sbjct 1825 CCTGGACAGTCTGATGTACCATCCATTGCCGCGGTTGTGAGCTCCAGAGAATGGCCACTG 1884
Query 2088 ATCTCAAAATATAAGGCATGTGTACGCACACAATCACGCAAAATGGAAATGATTGATAAT 2147
||||||||||| | ||| ||||| || ||||| || || ||| | |||||||| |||||
Sbjct 1885 ATCTCAAAATACAGGGCTTGTGTGCGTACACAGTCGCGTAAAGTTGAAATGATCGATAAC 1944
Query 2148 CTCTTCAAACCCGTCAATGGCAAAGACGAAGGAATGT-TCA-G-GGAA-CTCTTG-TTAG 2202
||||| ||||| ||| || |||||| || | || || ||| | || | |||||| || |
Sbjct 1945 CTCTTTAAACCAGTCTCTGACAAAGATGATG-AAGGTATCATGAGGGAGCTCTTGCTT-G 2002
Query 2203 ACTTTTACTACA-GTTCAG-AGAATAGGAAACC-AGAGCACATCATTATTTTCAGGGATG 2259
||||||||| || |||| | || | ||||| | | ||||| ||||||||||||||||
Sbjct 2003 ACTTTTACT-CAAGTTCTGCAG--TC--AAACCCA-ATCACATTATTATTTTCAGGGATG 2056
Query 2260 GTGTAAGCGAGTCTCAGTTCAATCAAGTTCTTAATATTGAATTGGATCAGATGATGCA 2317
|||| || || |||||||| || |||||||||||||||||| |||||||||||| |||
Sbjct 2057 GTGTGAGTGAATCTCAGTTTAACCAAGTTCTTAATATTGAACTGGATCAGATGAAGCA 2114
Score = 455 bits (246), Expect = 9e-127
Identities = 372/433 (86%), Gaps = 8/433 (2%)
Strand=Plus/Plus
Query 2379 AACCACCACACAAAGTTCTTCCAG-TCTCGAGGCCCTGATAATGTTCCTCCAGGAACAAT 2437
||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 2119 AACCACCACACCAAGTTCTTCCAGACCAGGA-GCCCTGATAATGTTCCTCCAGGAACAAT 2177
Query 2438 CATTGACAGCCAGATCTGTCACCCACGCAACTTTGATTTCTATCTCTGCGCCCATGCTGG 2497
||||| ||| | |||||||||| || |||| |||||||||||| || || ||||||||
Sbjct 2178 AATTGATAGCAACATCTGTCACCAACACAACAATGATTTCTATCTTTGTGCTCATGCTGG 2237
Query 2498 CATGATTGGAACTACAAGGCCAACACATTACCATGTTCTGTATGACGAGATTGGGTTTGC 2557
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2238 AATGATTGGAACTACAAGGCCAACACATTACCATGTGCTGTATGACGAGATTGGATTTGA 2297
Query 2558 CACAGA-CGACCTCCAAGAACTTGTGCATTCTCTGTCCTATGTCTACCAGAGGAGCACCA 2616
|||||| | || ||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 2298 CACAGATCAAC-TCCAAGAACTTGTGCATTCCCTATCCTATGTCTACCAGCGGAGCACAA 2356
Query 2617 CTGCGATCTCAGTCGTTGCACCTG-TATGTTACGCTCATTTGGCAGCTGCACAGATGGGA 2675
|||| ||||| | ||||| || | ||||||| ||||||||||| |||||||||||||||
Sbjct 2357 CTGCAATCTCTCTTGTTGCGCC-GATATGTTATGCTCATTTGGCGGCTGCACAGATGGGA 2415
Query 2676 ACTGTGATGAAGTATGAAGAG-TTGTCTGAGACTTCTTCGAGCCATGGAGGAATCACCAC 2734
|||| |||||||| ||| || || ||||||||||| |||||||| || || |||||||
Sbjct 2416 ACTGCGATGAAGTTTGAGGACATT-TCTGAGACTTCATCGAGCCACGGCGGGATCACCAT 2474
Query 2735 ACCTGGAGCAGTCCCTGTGCCACCTATGCCGCAGCTGCACAATAATGTTTCAACCTCCAT 2794
| ||||||||||| |||||||||| |||||| ||||| ||| |||||| | | || ||
Sbjct 2475 AGCTGGAGCAGTCTCTGTGCCACCCATGCCGAAGCTGAACACCAATGTTGCTAGTTCAAT 2534
Query 2795 GTTCTTCTGTTGA 2807
||||||||| |||
Sbjct 2535 GTTCTTCTGCTGA 2547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113966013040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5