BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21160.3
Length=2760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489026 jgi|Araly1|489026|fgenesh2_kg.6__2160__AT5G21160.1 4185 0.0
> Ahg489026 jgi|Araly1|489026|fgenesh2_kg.6__2160__AT5G21160.1
Length=3088
Score = 4185 bits (2266), Expect = 0.0
Identities = 2580/2723 (95%), Gaps = 56/2723 (2%)
Strand=Plus/Plus
Query 8 TTGGGGTTATACGTTTCACTGTTTGTTTCATCCTCGCTTATTCCTCCCTTAAAGAGTGTC 67
||||||||||||||||||||||||||| ||| | | | ||| |||||||||||||
Sbjct 1 TTGGGGTTATACGTTTCACTGTTTGTTACAT--T-G-----T-CTCGCTTAAAGAGTGTC 51
Query 68 GCCACCAAAacacacacacacacTTGCCTCCTTCTTCAACCTCTCTTCCTCACATTGCGT 127
|||||| ||| | ||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 52 GCCACC-AAA-A-ACA-ACACACTTGCCTCCTTCTTCGACCTCTCTTCATCACATTGCGT 107
Query 128 CTTCTCCATCTGATCCTTCAATCCTCGTTCTGTTTTTGATCCAATTGAATCGCTTCCTTG 187
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 108 CTTCTCCTTCCGATCCTTCAATCCTCGTTCCGTTTTTGATCCAATTGAATCGCTTCCGTC 167
Query 188 TTTTGATTCTGTTTATCTTTCCAAGTTTCTAATGATGGCGGAGACTGAAGGATCAGTGGC 247
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 TTTTGATTCTGTTTATCTTTCCAAGTTTCTGATGATGGCGGAGACTGAAGGATCAGTGGC 227
Query 248 CGATGATCGAGAATTGATCACCCGTGAAGGTGGTATTGGGACTAAGTCTCCGTGGAAAAC 307
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 228 CGATGATCGAGAATTGATCAGCCGTGAAGGTGCTATTGGGACTAAGTCTCCGTGGAAAAC 287
Query 308 AACGACTTCTCCTGTTGAGACTATTGACGCTCCTGTAATGGGAGCTCATTCGTGGCCTGC 367
|||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 288 AACGGCTTCTACTGCTGAGACTATTGACGCTCCTGTAATGGGAGCTCATTCATGGCCTGC 347
Query 368 ACTCGCCGACGCTGCCCAACAACCGCGTCCTAAGAATCCTCCG------GCGCCTGCACC 421
|||||||| ||||| |||||||||||||| |||||||||||| || ||||||||
Sbjct 348 GCTCGCCGATGCTGCGCAACAACCGCGTCCCAAGAATCCTCCGCCCTCTGCACCTGCACC 407
Query 422 TGCTCCGCCGTCTAAAAACATTCCGACGTCTATCCCAATCCCTACTCCGGCCGTAACTGG 481
||| ||||||||||||||||||||||| ||||||||||||||| ||| ||| ||| ||||
Sbjct 408 TGCACCGCCGTCTAAAAACATTCCGACATCTATCCCAATCCCTTCTCAGGCTGTAGCTGG 467
Query 482 TCAAGCGAAATCTAAGGGTGGTGGAAAGGC---TAATCCTGGACACAAGAATCCATCTGG 538
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 468 TCAAGCGAAATCCAAGGGTGGTGGAAAGGCTAATAATCCTGGACACAAGAATCCATCTGG 527
Query 539 CCGTCATTCAAAACCAGG-TCCGAGGAGCAACCAGAATGG---TCCT------CCTCCTC 588
||||||||| |||||||| ||| ||||||||||| ||||| |||| |||||||
Sbjct 528 CCGTCATTCTAAACCAGGCTCC-AGGAGCAACCAAAATGGTCCTCCTCCACCACCTCCTC 586
Query 589 CTCCTTATCTCGTGCATGCTGTACCGTATCATCCACCTCCTTTTCCACCTATGGTGCCTC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTCCTTATCTCGTGCATGCTGTACCGTATCATCCACCTCCTTTTCCACCTATGGTGCCTC 646
Query 649 TGCCACATGCTGCTGGTCCAGATTTTCCATATGCACCTTATCCTCCCTACCCGGTTCCTG 708
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 647 TGCCACATGCTGCTGCTCCAGATTTTCCATATGCTCCTTATCCTCCCTACCCGGTTCCTG 706
Query 709 TGCCTCCTGTTACTGAGTCTGGCAATGAGAAGCAAGTTCAAGCTTCCCCTCTTCCACCTG 768
| ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTCCTCCTGTTTCGGACTCTGGCAATGAGAAGCAAGTTCAAGCTTCCCCTCTTCCACCTG 766
Query 769 TGTTGCCAGCTCCTCAAGGGGATCCTGGAAAGCCTTGGCCGCATCAGAGGGGTTTTGACC 828
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGCTGCCACCTCCTCAAGGGGATCCTGGAAAGCCTTGGCCGCATCAGAGGGGTTTTGACC 826
Query 829 CCAGAAACATGCCAC-A--AGGTGCTGGACCAAGAAATTTCGGGAGACCTCCATTTATGG 885
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CCAGAAACATGCCTCAAGGAGGTGCTGGACCAAGAAATTTCGGGAGACCTCCATTTATGG 886
Query 886 GTCCAGCTCCTGGGTTCCTGGTTGGTCCAGGTCCAGGCTTTCCTGGGCCTGTATACTACT 945
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTCCAGCTCCTGGGTTCCTCGTTGGTCCAGGTCCAGGCTTTCCTGGGCCTGTATACTACT 946
Query 946 TGCCGGGTCCACCCCCTGGAGCTATAAGAGGTCCTTATCCTCCACGCTTTGCTCCATACC 1005
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 947 TGCCGGGTCCACCCCCTGGAGCTATAAGAGGTCCTTATCCTCCACGCTTTTCTCCATACC 1006
Query 1006 CTGTAAACCAGGGTCCTCCAATACTATCTCCAGAAAAACTCGACTTAAGGGATAGAGTCT 1065
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CTGTAAACCAGGGTCCTCCAGTACTATCTCCAGAAAAACTCGACTTAAGGGATAGAGTCT 1066
Query 1066 TAAAACAAGTAGAGTATTATTTCA-G-----------------TGATGAAAACCTTGAGA 1107
|||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1067 TAAAACAAGTAGAGTATTATTTCAGGCAACTTACTCCTTTATTTGATGAAAATCTTGAGA 1126
Query 1108 ATGATCATTACCTCATTTCTTTGATGGATGAAGAAGGATGGGTTCCCACAAAAATTATAG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATGATCATTACCTCATTTCTTTGATGGATGAAGAAGGATGGGTTCCCACAAAAATTATAG 1186
Query 1168 CTGGCTTCAAAAGGGTTAAAGCAATGACTATGGATGTTGATTTTATAGTCTATGCGTTGG 1227
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1187 CTGGCTTCAAAAGGGTTAAAGCAATGACCATGGATGTTGATTTTATTGTCTATGCGTTGG 1246
Query 1228 GGTTTTCTAATTCTGTTGAAGTGCAGGGTGACCAGATACGCAAGCGTGACAAGTGGTCTG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GGTTTTCTAATTCTGTTGAAGTGCAGGGTGACCAGATACGCAAGCGTGACAAGTGGTCTG 1306
Query 1288 ACTGGATTCCTGCATCTAAAAAGTCAACCTCTGCGGAGACAATTGGAGACGGTGACAAAG 1347
|||||||||||||||||||||||||| |||||| ||| | |||||||||| ||||||||
Sbjct 1307 ACTGGATTCCTGCATCTAAAAAGTCAGCCTCTGTGGACAAAATTGGAGACAGTGACAAAT 1366
Query 1348 ATTCCCCAAAAAGTATAACAAGCGGGGATAATTTTGGAAACCCTTCAAAGGGTTCTTCAA 1407
|||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1367 ATTCCCTAGAAAGTATAACAAGCGGGGATAATTTTGGAAAACCTTCGAAGGGTTCTTCAA 1426
Query 1408 AGCCTACCGTGTCCGATTTCTCTTCAGAGGGAGCTCAGTCATCAAGAACCAATAATTATA 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AGCCTACCGTGTCCGATTTCTCTTCAGAGGGAGCTCAGTCATCAAGAACCAATAATTATA 1486
Query 1468 AAAGTGGTAACCTGAAATCATCAGCAGACGAAAAAAGAAATGTGGAGGACTTGTCAAACG 1527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 AAAGTGGTTACCTGAAATCATCAGCAGACGAAAAAAGAAATGTGGAGGACTTGTCAAACG 1546
Query 1528 ATTTTTCAAACACTTTCTTGCTTGACGAGGAACTAGATCTGGAGCACAGAAGCCCGAGAA 1587
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1547 ATTTTTCAAACACTTTCTTGCTTGACGAGGAACTGGATCTGGAGCACAGAAGCCCGAGAA 1606
Query 1588 AGAGTGGACTGTCCATGTCCAAAAGCATTGAGTATGAAGACGATGATATGGCTGTTGATG 1647
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AGAGTGGACTGTCTATGTCCAAAAGCATTGAGTATGAAGACGATGATATGGCTGTTGATG 1666
Query 1648 ATCAAGATATTCAGAAACTTGTAATTGTTACCCAGAATAGTGGTAAAAGTGATGGCGCTG 1707
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1667 ATCAAGATATTCAGAAGCTTGTAATTGTTACCCAGAATAGTGGTAAAAGTGATGGCACTG 1726
Query 1708 GAATCGGTGGGACGGAAGCAAAAAATATTCCTAAGGAGCTTGCCTCCACAATCAACGATG 1767
|||| |||| |||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1727 GAATTGGTGTGACGAAAGCAAAAAATATTCCTAAGGAACTTGCCTCCACAATAAACGATG 1786
Query 1768 GTCTTTACTACTTTGAGCAGGAGCTTaaaaaaaaa-CGATCTGGCCGTAGGAAGAACAAC 1826
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1787 GTCTTTACTACTTTGAGCAGGAGC-TAAAAAAAAATCGATCTGGCCGTAGGAAGAACAAC 1845
Query 1827 TCCCATTTGGATACCAAAGATGGGAAAATCAAATCTGGGGAAGGATTGAACACTAAGTTG 1886
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1846 TCCCATTTGGATACCAAAGATGGGAAAATCAAATCTGGGGGAGGATTGAACACGAAATTG 1905
Query 1887 GGCGAAAATTCCGCAGCAAATGATGGAGGGGAAGAGCATGGAATCATTACTTCACGGAGG 1946
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1906 GGAGAAAATTCCGCAGCAAATGAAGGAGGGGAAGAGCATGGAATCATTACTTCACGGAGG 1965
Query 1947 AAGCAAAATAAGGGAACGCACAAACATCATACAGCCCATGCACGGAGGTTCTTCTCGAGT 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 AAGCAAAATAAGGGAACGCACAAACATCATACAGCCCATGCACGGAGGTTCTTCTCGAGT 2025
Query 2007 AACATAAGGAACAATGGAAATATATCAGAAAGTCCGCCTAGTAGCTCCATTGGATTTTTC 2066
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 AACATAAGGAACCATGGAAATATATCAGAAAGTCCGCCTAGTAGCTCCATTGGATTTTTC 2085
Query 2067 TTTGGTTCTACACCACCAGACAGTCATGGCCCTAGGCTTTCGAAATTGAGTTCATCTCCA 2126
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2086 TTTGGTTCTACACCACCAGACAGTCATGGCCCTAGGCTTTCAAAATTGAGTTCATCTCCA 2145
Query 2127 CAATGTACACTTTCTGGAAGCAGTCCACCTGTGGGCTCTTTGCCAAAATCATTTCCACCT 2186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CAATGCACACTTTCTGGAAGCAGTCCACCTGTGGGCTCTTTGCCAAAATCATTTCCACCT 2205
Query 2187 TTTCAACATCCGAGCCACCAACTGTTGGAAGAGAATGGGTTTAAACAAGAAAAGTACTTG 2246
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 TTTCAACATCCAAGCCACCAACTGTTGGAAGAGAATGGGTTTAAACAAGAAAAGTACTTG 2265
Query 2247 AAGTATCGCAAGCGCTGCTTAAACGAAAGAAAGAAGCTAGGTAGCGGATGCAGTGAGGAA 2306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2266 AAGTATCGCAAGCGCTGCTTAAACGAAAGAAAGAAGCTGGGTAGCGGATGCAGTGAGGAA 2325
Query 2307 ATGAACCATTTGTACCGATTTTGGTCGTATTTCCTCAGAGACACATTTGTTCTCTCTATG 2366
||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 2326 ATGAATCATTTGTACCGATTTTGGTCATATTTCCTCAGAGACACCTTTGTTCTGTCTATG 2385
Query 2367 TATGATGACTTTCAGAAGTTTGCTCTTGAGGATGCAGCTGGCAATTACGATTATGGGCTG 2426
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2386 TATGATGACTTTCAGAAGTTTGCTCTTGAGGATGCAGCTGGCAATTACAATTATGGGCTG 2445
Query 2427 GAGTGTCTCTTTAGGTTTTATAGTTATGGTCTGGAGAAGCACTTTGATGAGGACCTTTAC 2486
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 GAGTGTCTCTTTCGGTTTTATAGTTATGGTCTGGAGAAGCACTTTGATGAGGACCTTTAC 2505
Query 2487 AAGGACTTTGAGAAGCTATCGCTTGACTTCTACCACAAGGGAAATCTGTATGGCTTGGAG 2546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 AAGGACTTTGAGAAGCTATCGCTTGACTTCTACCACAAGGGAAATCTGTATGGCTTGGAG 2565
Query 2547 AAATATTGGGCATTCCACCATTATCGAGGCAAAGAAGAACCGATAACAAAGCACCCTGAG 2606
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2566 AAATATTGGGCATTCCACCATTATCGAGGCAAAAAAGATCCGATAACAAAGCACCCTGAG 2625
Query 2607 CTAGAGAAACTACTGAAGGAAGAATTCCGTAGCATAGACGATTTCCGAGCAAAGGAAACA 2666
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2626 CTAGAGAAGCTACTGAAGGAAGAATACCGTAGCATAGACGATTTCCGAGCAAAGGATACA 2685
Query 2667 ATCACCAACCaaaaagaaaacaa 2689
||||||||||||||||||||||
Sbjct 2686 GTCACCAACCAAAAAGAAAACAA 2708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104138729830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5