BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21170.2
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489028 jgi|Araly1|489028|fgenesh2_kg.6__2162__AT5G21170.2 1801 0.0
> Ahg489028 jgi|Araly1|489028|fgenesh2_kg.6__2162__AT5G21170.2
Length=1244
Score = 1801 bits (975), Expect = 0.0
Identities = 1184/1277 (93%), Gaps = 46/1277 (4%)
Strand=Plus/Plus
Query 1 AtctctctcctctctttgtctctctcGCTTCTGTGATTTGGGC-TTTT-TCAGATGGGAA 58
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||
Sbjct 1 ATCTCTCTCCTCTCTTTGTCTCTCTCACTTCTGTGATTTGGGCTTTTTCTCAGATGGGAA 60
Query 59 ATGCGAACGGCAAAGACGAAGACGCCGCCGCCGGTAGCGGTGGTGCAGATGTTACCTCGT 118
|||||||||||||||| || ||||| ||||| || | || | ||||||||| |
Sbjct 61 ATGCGAACGGCAAAGAAGACGACGCTACCGCC----GCCG-CCAGC-GGTGTTACCTCAT 114
Query 119 CCTCGGCGAGATCTAATGGCGGCGATCCTTCTGCACGCAGTCGTCACCGTCGTCCTTCTT 178
| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 115 CTTCGGCGAGATCCAACGGCGGCGATCCTTCTGCACGCAGTCGTCATCGTCGTCCTTCTT 174
Query 179 CAGACTCTATGAGCAGTTCTCCTCCCGGAAGTCCTGCTCGATCTCCATCTCCTTTCTTAT 238
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 175 CAGATTCTATGAGCAGTTCTCCTCCCGGAAGTCCCGCTCGATCTCCATCTCCTTTCTTAT 234
Query 239 TCGCTCCTCAGCCCACATTGTTATTCCACGTTACATCTTACAACATTTGCTCACCTATGC 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 TCGCTCCTCAGCCCACATTGTTATTCCACCTTACATCTTACAACATTTGCTCACCTATGC 294
Query 299 GTCACCTCTTCCATTGTTTAGGCTTAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 GTCACCTCTTCCATTGTTTAGGCATAACATGTGTACCTAATGGCTGCATTTCGTGTCGGA 354
Query 359 TGGTTCCCGTGGCTCCATTGCAGAGAGCAAACGCCCCTCC-T--CCTAATAACATCCAAT 415
||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 355 TGGTTCCTGTGGCTCCATTGCAGAGAGCTAACGCCCCTCCTTCACCTAATAACATCCAAT 414
Query 416 GGAACCAATCACAGAGAGTTTTTGATAATCCCCCAGAGCAAGGAATCCCTACCATCATTA 475
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 415 GGAACCAATCACAGAGAGTTTTTGATAATCCACCAGAGCAAGGAATCCCTACTATCATTA 474
Query 476 CATGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCATGGGACAATTGGAGATCAA 535
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 475 CTTGGAACCAAGGAGGTAATGATGTGGCGGTGGAAGGATCCTGGGACAATTGGAGATCAA 534
Query 536 GGAAGAAGCTGCAGAAATCAGGG-AAAGACCACTCGATTCTCTTTGTCCTTCCATCTGGC 594
||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 535 GGAAGAAGCTGCAGAAATC-GGGAAAAGACCACTCAATTCTCTTTGTCCTTCCATCTGGC 593
Query 595 ATATACCACTACAAGGTGATTGTGGACGGTGAATCCAAATACATCCCAGATTTACCCTTT 654
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 594 ATATACCACTACAAGGTGATTGTCGACGGTGAATCCAAATACATTCCAGATTTACCATTT 653
Query 655 GTAGCAGACGAAGTTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 714
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTATCAGACGAAATTGGCAATGTCTGTAACATTCTCGATGTTCATAACTTTGTGCCAGAA 713
Query 715 AACCCAGAAAGCATAGTGGAGTTTGAGGCGCCACCATCACCTGATCATAGCTACGGTCAA 774
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 714 AACCCAGAAAGCATAGTGGAGTTTGAAGCGCCACCGTCACCTGATCATAGCTACGGTCAA 773
Query 775 ACCCTACCAGCCGCAGAAGATTACGCGAAAGAGCCACTGGCGGTGCCACCTCAGCTTCAT 834
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 774 ACCCTACCAGCCGCAGAAGATTACGCAAAAGAGCCACTTGCGGTGCCACCTCAGCTTCAT 833
Query 835 CTAACACTTCTTGGCA-CTACTGAAGAGACAGCCATAGCCACAAAGCCTCAACATGTGGT 893
|||||||||||||||| | || ||||| | |||| |||||||||||||||||||||||||
Sbjct 834 CTAACACTTCTTGGCAGC-ACGGAAGAAAGAGCCGTAGCCACAAAGCCTCAACATGTGGT 892
Query 894 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GCTTAACCATGTGTTCATAGAGCAAGGATGGACTCCTCAATCCATAGTAGCTTTGGGTTT 952
Query 954 AACCCACAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1013
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AACCCAGAGGTTCGAGTCTAAGTACATAACTGTTGTCCTCTACAAACCGCTCACACGGTA 1012
Query 1014 ACCCTAAAAATTCAGTGCCACATTGttctctctctttctttctttttcatctctcAATTA 1073
||||||||||||||||||||||||||||| | | | | | ||||| |||||
Sbjct 1013 ACCCTAAAAATTCAGTGCCACATTGTTCT-T-T-T--CAT--------ATCTC--AATTA 1057
Query 1074 TGTGAAAACATGTT-CTTTGTTCATAGTGACTAGTGAGTGCCCAACATTTGAGTTTATTA 1132
||||||| | | || ||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 1058 TGTGAAACC-T-TTACTTTGTTCATAGTGA---GTG----CCCAACATT-GAGTTTATTA 1107
Query 1133 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGTAACGATTG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1108 ACCTCTTTCTTACCTGGTTTGTGGTGCTTGTGTACAAAGCTTCTCTCATTGCAACGATTG 1167
Query 1193 TTGT-TT-TAT-TTTC-TGCAAAAACTGTAAAATACATTCGCTAATAATGG-CTATAACA 1247
| | || ||| |||| |||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1168 TACTCTTATATATTTCCTGCAAAAACTGTGAAATACATTCTCTAATAATGGGCTATAACA 1227
Query 1248 AGCTTATCTGCTAGCAA 1264
|||||||||||||||||
Sbjct 1228 AGCTTATCTGCTAGCAA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5