BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G21274.1

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489030 jgi|Araly1|489030|fgenesh2_kg.6__2164__AT5G21274.1         933    0.0  


> Ahg489030 jgi|Araly1|489030|fgenesh2_kg.6__2164__AT5G21274.1
Length=634

 Score =  933 bits (505),  Expect = 0.0
 Identities = 546/565 (97%), Gaps = 6/565 (1%)
 Strand=Plus/Plus

Query  53   aaaaGGTAAGAAGGAAAATGGCGGATCAGCTCACCGATGACCAGATCTCAGAGTTCAAGG  112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAAAGGTAAGAAGGAAAATGGCGGATCAGCTCACCGATGACCAGATCTCAGAGTTCAAGG  60

Query  113  AAGCCTTTAGCCTCTTCGATAAGGATGGTGATGGTTGTATCACCACCAAGGAGCTCGGAA  172
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   AAGCCTTTAGCCTCTTCGATAAGGATGGTGATGGTTGCATCACCACCAAGGAGCTCGGAA  120

Query  173  CCGTGATGAGGTCTCTGGGGCAAAACCCAACAGAAGCTGAGCTTCAAGACATGATCAATG  232
            |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  121  CCGTGATGAGGTCTTTGGGGCAAAACCCAACAGAAGCTGAGCTACAAGACATGATCAATG  180

Query  233  AAGTTGATGCAGATGGGAACGGGACCATTGATTTCCCGGAGTTCCTGAACCTGATGGCAA  292
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  181  AAGTTGATGCAGATGGGAACGGGACCATAGATTTCCCGGAGTTCCTGAACCTGATGGCAA  240

Query  293  GGAAAATGAAGGACACTGATTCAGAGGAAGAGCTCAAGGAAGCTTTTAGGGTTTTTGATA  352
            |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct  241  GGAAAATGAAGGACACTGATTCAGAGGAAGAGCTGAAGGAAGCCTTTAGGGTTTTTGATA  300

Query  353  AAGACCAGAATGGTTTCATATCTGCAGCAGAGCTTCGACATGTCATGACAAATCTCGGTG  412
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  301  AAGACCAGAATGGTTTCATATCTGCAGCAGAGCTTCGACATGTGATGACAAATCTCGGGG  360

Query  413  AGAAGCTATCCGATGAGGAAGTTGATGAGATGATCCGAGAAGCGGATGTTGATGGCGATG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGAAGCTATCCGATGAGGAAGTTGATGAGATGATCCGAGAAGCGGATGTTGATGGCGATG  420

Query  473  GTCAGATTAACTATGAAGAATTCGTCAAAGTCATGATGGCTAAGTGAGAGAATTTTATCT  532
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  421  GTCAGATCAACTATGAAGAATTCGTCAAAGTCATGATGGCTAAGTGAGAGAATTTTATC-  479

Query  533  TAAGCCCACAAAAA-GAAACAAGATTTATGATTTCTACAGTGAAGTTACATTATGACTTG  591
                |||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  480  ----CCCATAAAAAAGAAACAAGATTTATTATTTCTACAGTGAAGTTTCATTATGACTTG  535

Query  592  ATTCTGGTTGCGTTCTTTAGGACAT  616
            ||||||||||| |||||||||||||
Sbjct  536  ATTCTGGTTGCCTTCTTTAGGACAT  560


 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  653  TTTTAGTGTTATGTGAAGTATGAACTCATATTTTGCTC  690
            ||||||||||||||||||||||||||||||||||||||
Sbjct  575  TTTTAGTGTTATGTGAAGTATGAACTCATATTTTGCTC  612



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27982221078


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5