BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21280.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489044 jgi|Araly1|489044|fgenesh2_kg.6__2178__AT5G21280.1 1441 0.0
> Ahg489044 jgi|Araly1|489044|fgenesh2_kg.6__2178__AT5G21280.1
Length=1091
Score = 1441 bits (780), Expect = 0.0
Identities = 1027/1137 (90%), Gaps = 53/1137 (5%)
Strand=Plus/Plus
Query 12 CTTTCTGTTCTCTTTCCGGAGACATTTGTCTAAATCTCATCATCATTCACAATTTACTCA 71
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CTTTCTGTTCTCTTTCCGGAGACATTTG--TAAATCTCATCATCATTCACAATTTACTCG 58
Query 72 AACAAAACCTTGAGAAAGAGaaaaaaaTGATCCAAGAGAAGAAGAAAAACCTATTAATGT 131
|||||| |||| ||| |||||||||||||||||||||||||| || |||| |||
Sbjct 59 AACAAAGCCTT------GAG-AAAAAATGATCCAAGAGAAGAAGAAACACAGATTAGTGT 111
Query 132 CTTCTCAGTGAAAAACCATAACTAAAATCTTTAATGGTCAGATCAAACAAGCAAGAACCA 191
||| ||||||||||| ||| | | |||||||||||||||||| |||||||||||||||||
Sbjct 112 CTTTTCAGTGAAAAATCAT-AGTTAAATCTTTAATGGTCAGACCAAACAAGCAAGAACCA 170
Query 192 CGCGTCTCTTCTACTTACATCCGATCTCTCGTGAAGCAACAACTTGCTTATTCCACCACT 251
|| |||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 171 CGTGTCTCTGCTACTTATATCCGATCTCTCGTGAAGCAACAACTTACTTCTTCCACCACT 230
Query 252 ATGACCACCACCACCACAACAACAACAAACGATGGTAGCGGCGGCGG---AA---AAACG 305
||| ||||||||||| | || ||||| ||||||||||| || |||||
Sbjct 231 ATG------ACCACCACAAC--C-AC---TGATGGAAGCGGCGGCGGCAAAACGCAAACG 278
Query 306 CAAACGCAAACGCACAAGAAACAAGTGAGGAGGCGACTTCACACAAGCCGTCCTTATCAA 365
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CAAACGCAGACGCACAAGAAACAAGTGAGGAGGCGACTTCACACAAGCCGTCCTTATCAA 338
Query 366 GAACGTCTCCTAAACATGGCTGAAGCTCGTCGCGAAATCGTCACCGCTTTAAAACAACAT 425
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GAACGTCTTCTCAACATGGCTGAAGCTCGTCGCGAAATCGTCACCGCTTTAAAACAACAT 398
Query 426 CGTGCTTCCATGAGACAAGCCACAAGAATCCCACCGCCTCAACCACCCCCACCACCGCAG 485
||||||||||||||||||||||| || || ||||||||||||||||| ||||| | ||
Sbjct 399 CGTGCTTCCATGAGACAAGCCACGAGGATTCCACCGCCTCAACCACCGCCACC-GC-CA- 455
Query 486 CCTCTAAATCTTTTCTCTCCGCCGcctcctcctcctcctccGGATCCATTTTCTTGGACG 545
| | | | || | |||| || |||||||||||||||||||||||||
Sbjct 456 -C-C---A------C-CT---CAGCCT-CT--AAATCCTCCGGATCCATTTTCTTGGACG 497
Query 546 AATCCATCTCTCAATTTCCTCCTCCCTAATCAACCCTTAGGGTTAAACCTAAACTTCCAA 605
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 498 AATCCATCTCTCAACTTCCTCCTCCCTAATCAACCCTTAGGTTTAAACCTAAATTTCCAA 557
Query 606 GATTTCAACGACTTCATCCAAACCTCCTCAACAACATCTTCATCATCATCTTCCTCCACT 665
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 558 GATTTCAACGACTTCATCCAAACCTCATCAACAACATCTTCATCATCATCTTCCTCCACT 617
Query 666 TCATCTTCCTCATCCTCGATTTTTCCGACGAATCCTCATATCTACTCTTCCCCTTCACCT 725
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCATCTTCCTCATCGTCGATTTTTCCGACGAATCCTCATATCTACTCTTCCCCTTCACCT 677
Query 726 CCTCCCACTTTCACCACCGCCACTTCAGATTCAGCTCCTCAACTACCGTCTTCCTCTAAT 785
|||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 678 CCTCCCACCTTCACCACCGCCAATTCAGATTCAGCTCCTCAACCACCGTCTTCCTCCAAT 737
Query 786 GGAGAAAACAACGTGGTGACGTCAGCTTGGTGGTCAGAACTCATGTTGAAGACGGTGGAG 845
||||| ||||||||| | |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 738 GGAGAGAACAACGTGATAACGTCAGCTTGGTGGTCAGAGCTCATGATGAAGACGGTGGAG 797
Query 846 CCGGAGATTAAACCGGAAACGGAAGAAGTCATCGTAGTCGAAGATGACGTGTTTCCAAAG 905
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 798 CCGGAGATTAAACCGGAGACGGAAGAAGTCGCCGCAGTCGAAGATGACGTGTTTCCAAAG 857
Query 906 TTTAGTGACGTCATGGAATTTCCTTCGTGGTTAAACCAAACAGAGGAAGAATTATTTCAT 965
| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 858 CTAAGTGACGTCATGGAATTCCCTTCGTGGTTAAATCAAACAGAAGAAGAATTATTTCAT 917
Query 966 CCTTATAATCTCACTGATCATTACTCATCATCTCCTCATAATCCTCCATTATCCTGTATG 1025
|||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 918 CCTTATAATCTCACTGATAATTACTC-T--TCTCCTCATAATCCTCCATTATCCTGTATG 974
Query 1026 GAGATTGGAGAAATTGAAGGCATGGATGGAGACGACTGGCTTGCTTGAACCACAAAGATT 1085
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 975 GAGATTGGAGAAATTGAAGGTATGGATGGAGACGACTGGTTTGCTTGAACCACAAAGATT 1034
Query 1086 GATTACTGtttttttttt-CAGACATGATGAATCAACTctttggttattttcttatt 1141
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1035 GATTACTGTTTTTTTTTTTCAGACATGATGAATCAACTCTTTGGTTCTTTTCTTATT 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5