BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G21326.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value Ahg489031 jgi|Araly1|489031|fgenesh2_kg.6__2165__AT5G21326.1 2479 0.0 Ahg489029 jgi|Araly1|489029|fgenesh2_kg.6__2163__AT5G21222.1 1014 0.0 > Ahg489031 jgi|Araly1|489031|fgenesh2_kg.6__2165__AT5G21326.1 Length=1613 Score = 2479 bits (1342), Expect = 0.0 Identities = 1534/1620 (95%), Gaps = 39/1620 (2%) Strand=Plus/Plus Query 101 TCCCCAAAGGCGGCTACATCGGTTTTGTCACCTCTACTCGCTCACTTTTCTCCGTCCAAT 160 |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 28 TCCCCAAA---GGCTACATCGGTTTTGTCACCTCTACTTGCTCACTTTTCTCCGGCCAAT 84 Query 161 TTTGCAGCTTTTGAAGATCAAGAGGTGAACATTCGGAGTGATGAATCGGCCAAAGGTTCA 220 ||||||||||||||||||| | | |||||||||||||||||||||||||| Sbjct 85 TTTGCAGCTTTTGAAGATC---------A-A---GGAGTGATGAATCGGCCAAAGGTTCA 131 Query 221 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAGACGCTTGGACAAGGCACTTTTGCGAAAGT 280 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 132 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAAACGCTTGGACAAGGCACTTTTGCCAAAGT 191 Query 281 TCGGTGTGCTGTTAATACTGAGACAGGAGAACGCGTGGCTCTCAAAATACTTGATAAGGA 340 |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| Sbjct 192 TCGGTGTGCTGTTAATACTGAGACTGGAGAACGTGTGGCTCTCAAAATCCTTGATAAGGA 251 Query 341 GAAGGTTCTTAAGCATAAGATGGCTGAACAGATAAGGAGAGAAATTTGTACTATGAAGCT 400 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 252 GAAGGTTCTCAAGCATAAGATGGCTGAACTGATAAGGAGAGAAATTTGTACTATGAAGCT 311 Query 401 GATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 460 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 AATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 371 Query 461 TATTGTTCTAGAGTTCGGCACTGGTGGAGAGCTTTTTGACAAAATTGTACATGATGGGCG 520 |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 372 TATTGTCCTAGAGTTCGGTACTGGTGGAGAGCTTTTTGACAAAATTGTACACGATGGGCG 431 Query 521 CTTGAAAGAAGAGAATGCACGGAAATATTTTCAGCAGCTTATTAATGCAGTTGATTACTG 580 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 432 CTTGAAAGAAGAGAACGCACGGAAATATTTTCAGCAGCTTATCAATGCAGTTGATTACTG 491 Query 581 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 551 Query 641 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 552 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 611 Query 701 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 671 Query 761 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACT 820 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 672 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTGTTTGTACT 731 Query 821 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 791 Query 881 AGCTGGTGAATATCATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 940 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 AGCTGGTGAATTTTATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 851 Query 941 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCAGAGGTTCTGGGAGATGCGTG 1000 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 852 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCTGAGGTTCTGGAAGATGCGTG 911 Query 1001 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 971 Query 1061 TGTGGACGCTGTTTTCAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1120 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 972 TGTGGACGCTGTTTTTAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1031 Query 1121 ACCAACTTCAATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1180 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 ACCAACTTCGATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1091 Query 1181 TTTGTTTGAAGAAGAAGAGGGATTCAAGCGAGAAACGAGATTTGCTGCTAAAGGTGCTGC 1240 |||||||||||| ||||||||||||||| |||||||||||||||| |||||||| || || Sbjct 1092 TTTGTTTGAAGAGGAAGAGGGATTCAAGAGAGAAACGAGATTTGCAGCTAAAGGCGCAGC 1151 Query 1241 TAATGATTTAGTCCAAAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTCGATATTCAAAA 1300 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1152 TAATGATTTAGTCCAGAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTTGATATTCAAAA 1211 Query 1301 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAAGGAAACCTAAGAGT 1360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1212 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAGGGAAACCTAAAAGT 1271 Query 1361 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACGAA 1420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1272 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACTAA 1331 Query 1421 AGGGGATACACTAGAATTCCATAAGTTCTACAAGAAGCTCTCAACCTCACTTAACGATGT 1480 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1332 AGGGGATACATTAGAATTCCATAAGTTCTACAAGAAGCTCTCGACCTCACTTAACGATGT 1391 Query 1481 GGTTTGGAAATCTGGCGAGAGCTCTGGTCTAAGCAAATAAGAAAAAAGACTGATGATTCA 1540 |||||||||||||||||||||||| |||||||||| |||||| | ||||||| | || Sbjct 1392 GGTTTGGAAATCTGGCGAGAGCTCCAGTCTAAGCAACTAAGAATA--GACTGAT--T-CA 1446 Query 1541 AGTCCTTGCTTT-GACTAT--CTTT-T-ATTTAGCTTTTTGCTGATACTTTCTTTCAAGA 1595 ||||||| ||| | || | |||| | || | |||||| | | ||| |||||||| Sbjct 1447 AGTCCTTTATTTAG-CTTTTGCTTTCTGAT--A-CTTTTTT-T--T--TTT-TTTCAAGA 1496 Query 1596 CTCAATTCTTTTAAATATTAGAGACAAAAAGCCATGAGATTGATGACTCTGTAGATATCG 1655 |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| Sbjct 1497 CTCAATTCTTTTAAATATTAGAGACAAAAACCCATGAGATTGA---CTCTGTACATATCG 1553 Query 1656 AAGCATGTGCAGTAAGTTTATGCTGTTCATATAATTGCAAACTTCGATTGTGTTGTGTCA 1715 ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1554 AAGCATGTGCAGTAACATTATGCTGTTCATATCATTGCAAACTTCGATTGTGTTGTGTCA 1613 > Ahg489029 jgi|Araly1|489029|fgenesh2_kg.6__2163__AT5G21222.1 Length=2706 Score = 1014 bits (549), Expect = 0.0 Identities = 808/931 (87%), Gaps = 25/931 (3%) Strand=Plus/Plus Query 173 GAAGATCAAGAGGTGAACATTC-G-GAGTGATGAATCG-GCCAAAGGTTCA-GCGTCGTG 228 ||||||||||||||||| | || | | ||||||| | | |||||||| || |||| | | Sbjct 105 GAAGATCAAGAGGTGAA-AATCTGAGTGTGATGAGT-GAGCCAAAGG-CCAGGCGTTGGG 161 Query 229 TTGGAAAGTATGAGGTTGGAAAG-ACGCTTGGAC-AAGGCACTTTTGCGAAAGTTCGGTG 286 ||||||| |||||| |||| ||| | | || | | || | |||||| |||||| ||| | Sbjct 162 TTGGAAAATATGAGCTTGG-AAGAATGATT-GCCGAATGTTCTTTTGGGAAAGTGCGGAG 219 Query 287 TGCTGTTAATACTGAGACAGGAGAACGCGTGGCTCTCAAAATACTTGATAAGGAGAAGGT 346 ||||||| ||||| |||||||||| | ||||||||| | || |||||||| || ||| | Sbjct 220 TGCTGTTGATACTCAGACAGGAGACCCCGTGGCTCTGATGATCCTTGATAAAGACAAGAT 279 Query 347 TCTTAAGCATAAGATGGCTGAACAGATAAGGAGAGAAATTTGTACTATGAAGCTGATAAA 406 ||| || ||||||||||||||||| |||| |||||| |||| ||| |||||||||||||| Sbjct 280 TCTCAACCATAAGATGGCTGAACAAATAAAGAGAGAGATTTCTACCATGAAGCTGATAAA 339 Query 407 CCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACT-AAGATATATATTG 465 |||||| ||||| ||| |||||||||||||||||||||| |||| | ||||||||||||| Sbjct 340 CCATCCTAATGTCGTGTGGCTGTATGAGGTTTTGGCGAGTAAGA-TGAAGATATATATTG 398 Query 466 TTCTAGAGTTCGGCACTGGTGGAGAGCTTTTTGACAAAATTGTACATGATGGGCGCTTGA 525 | ||||||||| || |||||||||||||||||||| |||| | ||||||| ||| ||| Sbjct 399 TCCTAGAGTTCATCAGTGGTGGAGAGCTTTTTGACAGAATTAAAAATGATGGACGCATGA 458 Query 526 AAGAAGA-GAATGCACGGAAATATTTTCAGCAGCTTATTAATGCAGTTGATTACTGCCAT 584 ||||||| ||| ||||||| |||||| ||||||||||| |||||||||||||||||||| Sbjct 459 AAGAAGAGGAA-GCACGGAGATATTTCCAGCAGCTTATCAATGCAGTTGATTACTGCCAC 517 Query 585 AGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCT-CAAGG 643 ||||||||| |||||||| | ||||||||||||||||| |||||||| |||| | ||| | Sbjct 518 AGCAGGGGATTGTACCACAGAGACTTAAAGCCGGAAAATTTGCTTCTTGATG-TGCAA-G 575 Query 644 A-AATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGATG 702 | ||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| Sbjct 576 AGAATTTGAAAGTCTCTGACTTTGGATTGAGTGCCTTGTCCCGACAAGTCGGGGGTGATG 635 Query 703 GTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGATC 762 | |||| |||||||||||| |||| |||||| |||||||||||||||||||||||||||| Sbjct 636 GCCTTCATCACACTGCATGTGGAAATCCAAATTATGCTGCTCCTGAGGTTCTTAATGATC 695 Query 763 AAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACTAC 822 |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 696 AAGGCTATGATGGGGCAAAGGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACTAC 755 Query 823 TTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT-A 881 || |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||| | | Sbjct 756 TTTCTGGGTATTTGCCTTTCGAGGATTCTAGTCTCACGACTCTGTACAAAAAGATC-TCA 814 Query 882 GCTGGTGAATATCA-TTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 940 ||| ||| | ||| ||||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct 815 TCTGCTGATT-TCAGTTGTCCTCCTTGGCTCTCTTCTGGTGCTAAGAATTTGATCGTCCG 873 Query 941 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCAGAGGTTCTGGGAGATGCGTG 1000 |||||||||||||||||||||||||||||| |||||||||||| || ||| ||||| ||| Sbjct 874 AATCTTGGATCCAAACCCTATGACTCGTATAACAATTCCAGAGATTTTGGAAGATGTGTG 933 Query 1001 GTTCAAGAAAAATTACAAGCCAGCTGT-TTTCGAGGAGAAGGAAGAAGCCAACTTGGATG 1059 |||||||||| |||||||||||||||| ||| || |||||| ||||||| || |||| || Sbjct 934 GTTCAAGAAAGATTACAAGCCAGCTGTATTT-GAAGAGAAGAAAGAAGCAAATTTGGCTG 992 Query 1060 ATGTGGACGCTGTTTTCAAAGATTCAGAAGA 1090 ||||||| ||||||||||||||||| ||||| Sbjct 993 ATGTGGAAGCTGTTTTCAAAGATTCTGAAGA 1023 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66962650710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5