BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21326.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489031 jgi|Araly1|489031|fgenesh2_kg.6__2165__AT5G21326.1 2479 0.0
Ahg489029 jgi|Araly1|489029|fgenesh2_kg.6__2163__AT5G21222.1 1014 0.0
> Ahg489031 jgi|Araly1|489031|fgenesh2_kg.6__2165__AT5G21326.1
Length=1613
Score = 2479 bits (1342), Expect = 0.0
Identities = 1534/1620 (95%), Gaps = 39/1620 (2%)
Strand=Plus/Plus
Query 101 TCCCCAAAGGCGGCTACATCGGTTTTGTCACCTCTACTCGCTCACTTTTCTCCGTCCAAT 160
|||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 28 TCCCCAAA---GGCTACATCGGTTTTGTCACCTCTACTTGCTCACTTTTCTCCGGCCAAT 84
Query 161 TTTGCAGCTTTTGAAGATCAAGAGGTGAACATTCGGAGTGATGAATCGGCCAAAGGTTCA 220
||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 85 TTTGCAGCTTTTGAAGATC---------A-A---GGAGTGATGAATCGGCCAAAGGTTCA 131
Query 221 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAGACGCTTGGACAAGGCACTTTTGCGAAAGT 280
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 132 GCGTCGTGTTGGAAAGTATGAGGTTGGAAAAACGCTTGGACAAGGCACTTTTGCCAAAGT 191
Query 281 TCGGTGTGCTGTTAATACTGAGACAGGAGAACGCGTGGCTCTCAAAATACTTGATAAGGA 340
|||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 192 TCGGTGTGCTGTTAATACTGAGACTGGAGAACGTGTGGCTCTCAAAATCCTTGATAAGGA 251
Query 341 GAAGGTTCTTAAGCATAAGATGGCTGAACAGATAAGGAGAGAAATTTGTACTATGAAGCT 400
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 252 GAAGGTTCTCAAGCATAAGATGGCTGAACTGATAAGGAGAGAAATTTGTACTATGAAGCT 311
Query 401 GATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AATAAACCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACTAAGATATA 371
Query 461 TATTGTTCTAGAGTTCGGCACTGGTGGAGAGCTTTTTGACAAAATTGTACATGATGGGCG 520
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 372 TATTGTCCTAGAGTTCGGTACTGGTGGAGAGCTTTTTGACAAAATTGTACACGATGGGCG 431
Query 521 CTTGAAAGAAGAGAATGCACGGAAATATTTTCAGCAGCTTATTAATGCAGTTGATTACTG 580
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 432 CTTGAAAGAAGAGAACGCACGGAAATATTTTCAGCAGCTTATCAATGCAGTTGATTACTG 491
Query 581 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CCATAGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCTCA 551
Query 641 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGGAAATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGA 611
Query 701 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TGGTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGA 671
Query 761 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACT 820
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 672 TCAAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTGTTTGTACT 731
Query 821 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 ACTTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT 791
Query 881 AGCTGGTGAATATCATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 940
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGCTGGTGAATTTTATTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 851
Query 941 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCAGAGGTTCTGGGAGATGCGTG 1000
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 852 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCTGAGGTTCTGGAAGATGCGTG 911
Query 1001 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTTCAAGAAAAATTACAAGCCAGCTGTTTTCGAGGAGAAGGAAGAAGCCAACTTGGATGA 971
Query 1061 TGTGGACGCTGTTTTCAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TGTGGACGCTGTTTTTAAAGATTCAGAAGAGCATCATGTCACAGAAAAGAAAGAGGAGCA 1031
Query 1121 ACCAACTTCAATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ACCAACTTCGATGAATGCCTTTGAGTTGATATCAATGTCGAGAGCTCTGGATCTCGGGAA 1091
Query 1181 TTTGTTTGAAGAAGAAGAGGGATTCAAGCGAGAAACGAGATTTGCTGCTAAAGGTGCTGC 1240
|||||||||||| ||||||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 1092 TTTGTTTGAAGAGGAAGAGGGATTCAAGAGAGAAACGAGATTTGCAGCTAAAGGCGCAGC 1151
Query 1241 TAATGATTTAGTCCAAAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTCGATATTCAAAA 1300
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1152 TAATGATTTAGTCCAGAAGATTGAAGAAGCTTCTAAGCCGCTTGGTTTTGATATTCAAAA 1211
Query 1301 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAAGGAAACCTAAGAGT 1360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1212 GAAAAACTATAAGATGAGACTTGAAAACGTGACTGCTGGAAGGAAGGGAAACCTAAAAGT 1271
Query 1361 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACGAA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1272 TGCAACTGAGATATTTCAAGTATCACCGTCTCTTCATATGATCGAAGTCCGGAAAACTAA 1331
Query 1421 AGGGGATACACTAGAATTCCATAAGTTCTACAAGAAGCTCTCAACCTCACTTAACGATGT 1480
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 AGGGGATACATTAGAATTCCATAAGTTCTACAAGAAGCTCTCGACCTCACTTAACGATGT 1391
Query 1481 GGTTTGGAAATCTGGCGAGAGCTCTGGTCTAAGCAAATAAGAAAAAAGACTGATGATTCA 1540
|||||||||||||||||||||||| |||||||||| |||||| | ||||||| | ||
Sbjct 1392 GGTTTGGAAATCTGGCGAGAGCTCCAGTCTAAGCAACTAAGAATA--GACTGAT--T-CA 1446
Query 1541 AGTCCTTGCTTT-GACTAT--CTTT-T-ATTTAGCTTTTTGCTGATACTTTCTTTCAAGA 1595
||||||| ||| | || | |||| | || | |||||| | | ||| ||||||||
Sbjct 1447 AGTCCTTTATTTAG-CTTTTGCTTTCTGAT--A-CTTTTTT-T--T--TTT-TTTCAAGA 1496
Query 1596 CTCAATTCTTTTAAATATTAGAGACAAAAAGCCATGAGATTGATGACTCTGTAGATATCG 1655
|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1497 CTCAATTCTTTTAAATATTAGAGACAAAAACCCATGAGATTGA---CTCTGTACATATCG 1553
Query 1656 AAGCATGTGCAGTAAGTTTATGCTGTTCATATAATTGCAAACTTCGATTGTGTTGTGTCA 1715
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1554 AAGCATGTGCAGTAACATTATGCTGTTCATATCATTGCAAACTTCGATTGTGTTGTGTCA 1613
> Ahg489029 jgi|Araly1|489029|fgenesh2_kg.6__2163__AT5G21222.1
Length=2706
Score = 1014 bits (549), Expect = 0.0
Identities = 808/931 (87%), Gaps = 25/931 (3%)
Strand=Plus/Plus
Query 173 GAAGATCAAGAGGTGAACATTC-G-GAGTGATGAATCG-GCCAAAGGTTCA-GCGTCGTG 228
||||||||||||||||| | || | | ||||||| | | |||||||| || |||| | |
Sbjct 105 GAAGATCAAGAGGTGAA-AATCTGAGTGTGATGAGT-GAGCCAAAGG-CCAGGCGTTGGG 161
Query 229 TTGGAAAGTATGAGGTTGGAAAG-ACGCTTGGAC-AAGGCACTTTTGCGAAAGTTCGGTG 286
||||||| |||||| |||| ||| | | || | | || | |||||| |||||| ||| |
Sbjct 162 TTGGAAAATATGAGCTTGG-AAGAATGATT-GCCGAATGTTCTTTTGGGAAAGTGCGGAG 219
Query 287 TGCTGTTAATACTGAGACAGGAGAACGCGTGGCTCTCAAAATACTTGATAAGGAGAAGGT 346
||||||| ||||| |||||||||| | ||||||||| | || |||||||| || ||| |
Sbjct 220 TGCTGTTGATACTCAGACAGGAGACCCCGTGGCTCTGATGATCCTTGATAAAGACAAGAT 279
Query 347 TCTTAAGCATAAGATGGCTGAACAGATAAGGAGAGAAATTTGTACTATGAAGCTGATAAA 406
||| || ||||||||||||||||| |||| |||||| |||| ||| ||||||||||||||
Sbjct 280 TCTCAACCATAAGATGGCTGAACAAATAAAGAGAGAGATTTCTACCATGAAGCTGATAAA 339
Query 407 CCATCCAAATGTAGTGCGGCTGTATGAGGTTTTGGCGAGCAAGACT-AAGATATATATTG 465
|||||| ||||| ||| |||||||||||||||||||||| |||| | |||||||||||||
Sbjct 340 CCATCCTAATGTCGTGTGGCTGTATGAGGTTTTGGCGAGTAAGA-TGAAGATATATATTG 398
Query 466 TTCTAGAGTTCGGCACTGGTGGAGAGCTTTTTGACAAAATTGTACATGATGGGCGCTTGA 525
| ||||||||| || |||||||||||||||||||| |||| | ||||||| ||| |||
Sbjct 399 TCCTAGAGTTCATCAGTGGTGGAGAGCTTTTTGACAGAATTAAAAATGATGGACGCATGA 458
Query 526 AAGAAGA-GAATGCACGGAAATATTTTCAGCAGCTTATTAATGCAGTTGATTACTGCCAT 584
||||||| ||| ||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 459 AAGAAGAGGAA-GCACGGAGATATTTCCAGCAGCTTATCAATGCAGTTGATTACTGCCAC 517
Query 585 AGCAGGGGAGTGTACCACCGGGACTTAAAGCCGGAAAACTTGCTTCTAGATGCT-CAAGG 643
||||||||| |||||||| | ||||||||||||||||| |||||||| |||| | ||| |
Sbjct 518 AGCAGGGGATTGTACCACAGAGACTTAAAGCCGGAAAATTTGCTTCTTGATG-TGCAA-G 575
Query 644 A-AATCTGAAAGTCTCTGATTTTGGATTGAGTGCGTTGTCCCGACAAGTCAGGGGTGATG 702
| ||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 576 AGAATTTGAAAGTCTCTGACTTTGGATTGAGTGCCTTGTCCCGACAAGTCGGGGGTGATG 635
Query 703 GTCTTCTTCACACTGCATGCGGAACTCCAAACTATGCTGCTCCTGAGGTTCTTAATGATC 762
| |||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 636 GCCTTCATCACACTGCATGTGGAAATCCAAATTATGCTGCTCCTGAGGTTCTTAATGATC 695
Query 763 AAGGTTATGACGGGGCAACCGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACTAC 822
|||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 696 AAGGCTATGATGGGGCAAAGGCAGACTTGTGGTCCTGTGGAGTGATACTCTTTGTACTAC 755
Query 823 TTGCTGGCTACTTGCCTTTCGAGGATTCTAATCTCATGACGCTGTATAAAAAGATAAT-A 881
|| |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||| | |
Sbjct 756 TTTCTGGGTATTTGCCTTTCGAGGATTCTAGTCTCACGACTCTGTACAAAAAGATC-TCA 814
Query 882 GCTGGTGAATATCA-TTGTCCTCCTTGGCTCTCTCCTGGTGCTAAGAACTTGATTGTCCG 940
||| ||| | ||| ||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct 815 TCTGCTGATT-TCAGTTGTCCTCCTTGGCTCTCTTCTGGTGCTAAGAATTTGATCGTCCG 873
Query 941 AATCTTGGATCCAAACCCTATGACTCGTATCACAATTCCAGAGGTTCTGGGAGATGCGTG 1000
|||||||||||||||||||||||||||||| |||||||||||| || ||| ||||| |||
Sbjct 874 AATCTTGGATCCAAACCCTATGACTCGTATAACAATTCCAGAGATTTTGGAAGATGTGTG 933
Query 1001 GTTCAAGAAAAATTACAAGCCAGCTGT-TTTCGAGGAGAAGGAAGAAGCCAACTTGGATG 1059
|||||||||| |||||||||||||||| ||| || |||||| ||||||| || |||| ||
Sbjct 934 GTTCAAGAAAGATTACAAGCCAGCTGTATTT-GAAGAGAAGAAAGAAGCAAATTTGGCTG 992
Query 1060 ATGTGGACGCTGTTTTCAAAGATTCAGAAGA 1090
||||||| ||||||||||||||||| |||||
Sbjct 993 ATGTGGAAGCTGTTTTCAAAGATTCTGAAGA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66962650710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5