BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21430.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941682 jgi|Araly1|941682|scaffold_602226.1 1020 0.0
> Ahg941682 jgi|Araly1|941682|scaffold_602226.1
Length=697
Score = 1020 bits (552), Expect = 0.0
Identities = 646/693 (93%), Gaps = 0/693 (0%)
Strand=Plus/Plus
Query 51 TGTGTAAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCATCTTTAGTCCAC 110
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3 TGTGTGAACCTTGGAGCTATGGCTTCCTTATCGACGATAACTCAACCGTCTTTAGTGCAC 62
Query 111 ATTCCCGGTGAATCAGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCATGGAAGCCA 170
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 63 ATTCCCGGCGAATCCGTCCTCCATCACGTACCAAGCACGTGCTCTTTCCCGTGGAAACCA 122
Query 171 ACTATCAACACGAAGCGGATTATCTGTTCGCCGGCTAGGAACTCCAGCGAAGTATCGGCG 230
||||||| |||||||||||||||||||||||| ||||||||||| | || || |||||
Sbjct 123 ACTATCACCACGAAGCGGATTATCTGTTCGCCTGCTAGGAACTCTGGTGAGGTTTCGGCA 182
Query 231 GAGGCAGAAACCGAAGGTGGATCTAGCACCGCCGTTGATGAAGCACCGAAAGAGTCTCCA 290
|| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||| |
Sbjct 183 GAAGCAGAAACCGAAGTTGGATCTAGCACCGCAGTGGATGAAGCACCGAAAGAGTCTGCG 242
Query 291 TCTTTAATATCCGCTCTCAACGTCGAACGCGCGCTACGTGGCCTTCCAATTACAGATGTT 350
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 243 TCTTTAATATCCGCTCTCAACGTCGAACGCGCTCTTCGTGGCCTTCCGATTACAGATGTG 302
Query 351 GATCATTATGGACGGCTTGGGATTTTCAGAAATTGTTCTTATGATCAGGTTACAATTGGT 410
||||| ||||||||||||||||||| ||||||||| |||||||||||||||| |||||||
Sbjct 303 GATCACTATGGACGGCTTGGGATTTCCAGAAATTGCTCTTATGATCAGGTTAGAATTGGT 362
Query 411 TACAAAGAAAGAGTTAAAGAGTTGAAGGAACAAGGACTAGATGAAGAACAACTCAAGACC 470
||| |||| |||||||| ||| | ||||||||||| ||||| |||||||||||||||| |
Sbjct 363 TACCAAGATAGAGTTAAGGAGCTAAAGGAACAAGGCCTAGACGAAGAACAACTCAAGAAC 422
Query 471 AAGATGGATCTTATCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 530
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAGATGGATCTTGTCAAAGAGTCATATACGATATTGTCGACCGTGGAAGAGAGAAGAATG 482
Query 531 TACGATTGGAGTCTAGCAAGAAGCGAAAAAGCAGAACGGTACGTGTGGCCATTTGAGGTT 590
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 483 TACGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACGTGTGGCCATTTGAGGTT 542
Query 591 GACATCATGGAACCATCCAGGGAAGAGCCACCTCCTCAGGAACCGGAAGATGTAGGACCA 650
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 543 GACATCATGGAACCATCCAGGGAAGAGCCGCCTCCTCAGGAACCGGAAGATGTCGGACCA 602
Query 651 ACGAGGATTTTGGGATACTTCATTGGAGCATGGCTTGTCCTTGGTGTTGCTCTTTCGGTT 710
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 603 ACGAGGCTTTTGGGATACTTCATTGGGGCATGGCTTGTCCTTGGTGTTGCTCTTTCTGTT 662
Query 711 GCGTTCAATCGTTAGCCAAATTTCGTTTCTTTA 743
|| |||||||||||||||||| |||||||||||
Sbjct 663 GCATTCAATCGTTAGCCAAATGTCGTTTCTTTA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5