BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21482.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489034 jgi|Araly1|489034|fgenesh2_kg.6__2168__AT5G21482.1 2850 0.0
> Ahg489034 jgi|Araly1|489034|fgenesh2_kg.6__2168__AT5G21482.1
Length=1849
Score = 2850 bits (1543), Expect = 0.0
Identities = 1740/1834 (95%), Gaps = 17/1834 (1%)
Strand=Plus/Plus
Query 1 ACAGACAAACaaaaaaaGGTTTGGTTCCAAAAGCTAAAAAGCTTCCATCTACATTAGAGT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACAGACAAACAAAAAAAGGTTTGGTTCCAAAAGCT-AAAAGCTTCCATCTACATTAGAGT 59
Query 61 CTCTCTATTTAGCATTTacacacaatcacacacacacacacacacacacacCAAAATGAT 120
||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 60 CTCTCAATTTAGCATTTACACACAAT----CACACACACACACACTCACACCAAAATGAT 115
Query 121 AGCTTACATAGAACCATACTTCTTGGAAAACGACGCCGAGGCTGCCTCTGCCGCCACCGC 180
||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||
Sbjct 116 AGCTTACATAGAACCATACTTCTTGGATAACGACGCCGAAGCCGCCTCGGCCGTCACCGC 175
Query 181 CGCCGGAAAATCTACGGATGGTGTTTCTGAGTCACTTAACATCCAAGGAGAAATCTTATG 240
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 176 CGCCGGAAAATCTACCGATGGCGTTTCTGAGTCACTTAACATCCAAGGAGAAATCGTATG 235
Query 241 TGGTGGAGCTGCGGCGGATATCGCCGGGAGAGATTTTGGCGGCATGAACTGTGTGAAGCC 300
|||||||||||| ||||||| |||| ||| ||||||||||| |||||||||||||||||
Sbjct 236 CGGTGGAGCTGCGACGGATATGGCCGCGAGGGATTTTGGCGGTATGAACTGTGTGAAGCC 295
Query 301 TCTTGCTGTGGTGAGACCAGTGGGACCGGAAGATATCGCCGGAGCGGTGAAAGCGGCTCT 360
|||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 296 TCTTGCCGTGGTGAGACCGGTGGGACCAGAGGATATCGCCGGAGCGGTGAAAGCGGCTCT 355
Query 361 GAGGTCAGATAAACTAACGGTGGCGGCGCGTGGAAACGGCCATTCTATCAACGGTCAAGC 420
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGTTCAGATAAACTCACAGTGGCGGCGCGTGGAAACGGCCATTCTATCAACGGTCAAGC 415
Query 421 CATGGCGGAAGGAGGACTCGTTGTCGATATGAGTACCACGGCGGAGAATCATTTCGAGGT 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 416 CATGGCGGAAGGAGGACTCGTCGTCGATATGAGTACCACGGCGGAGAATCATTTCGAGGT 475
Query 481 TGGTTATTTATCCGGCGGTGATGCCACGGCGTTTGTTGATGTCTCCGGAGGGGCATTATG 540
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGGTTATATATCCGGCGGTGATGCCACGGCGTTTGTTGATGTCTCCGGAGGGGCATTATG 535
Query 541 GGAAGATGTATTGAAACGGTGCGTTTCGGAGTACGGTTTGGCTCCGAGGTCTTGGACTGA 600
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 536 GGAAAATGTGTTGAAACGGTGCGTTTCGGAGTACGGTTTGGCTCCGAGGTCGTGGACGGA 595
Query 601 TTATCTTGGGTTAACGGTGGGAGGTACGTTGTCAAATGCCGGCGTTAGTGGTCAAGCGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 596 TTATCTTGGGTTAACGGTGGGAGGTACGTTGTCAAATGCCGGCGTTAGTGGACAAGCGTT 655
Query 661 CCGTTACGGACCACAGACGTCAAATGTAACGGAGTTGGACGTCGTTACGGGAAATGGTGA 720
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 656 CCGTTACGGACCACAGACGTCAAATGTAACGGAGTTAGACGTCGTAACGGGAAATGGTGA 715
Query 721 CGTCGTTACTTGCTCGGAGATTGAGAATTCAGAGCTATTCTTCTCTGTTTTAGGTGGTCT 780
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 716 CGTCGTTACTTGCTCGGAGATTGAGAATTCAGAGCTCTTCTTCTCCGTTTTAGGTGGTCT 775
Query 781 TGGTCAGTTTGGTATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCTCCTGATATGGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 TGGTCAGTTTGGTATCATCACCAGAGCTAGGGTTTTGCTACAGCCAGCTCCAGATATGGT 835
Query 841 GAGATGGATAAGAGTAGTATACACCGAGTTCGATGAGTTCACTCAAGACGCCGAGTGGCT 900
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 836 GAGATGGATAAGAGTAGTATACACCGAGTTCGACGAGTTCACTCAGGACGCCGAGTGGCT 895
Query 901 AGTAAGTCAGAAGAACGAGTCATCGTTCGATTACGTGGAAGGATTCGTGTTTGTCAACGG 960
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 896 GGTGAGTCAGAAGAACGAGTCATCATTCGATTACGTGGAAGGATTCGTGTTTGTCAACAG 955
Query 961 TGCTGACCCGGTTAACGGATGGCCAACAGTTCCCCTCCACCCGGACCACGAGTTTGACCC 1020
|| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 956 TGATGACCCGGTTAACGGATGGCCAACAGTTCCGCTCCACCCAGACCACGAGTTTGACCC 1015
Query 1021 GACCCGACTACCACAATCTTGCGGGTCGGTTCTTTATTGCCTCGAACTCGGTCTTCACTA 1080
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GACCCGGCTTCCACAATCTTCCGGGTCGGTTCTTTATTGCCTCGAACTCGGTCTTCACTA 1075
Query 1081 CAGAGACTCCGATTCCAACTCAACCATTGACAAGAGGGTGGAGAGATTGATCGGACGGCT 1140
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1076 CAGAGACTCCGATTCCAACTCAACCGTCGACAAGAGGGTGGAGAGATTGATCGGACGGCT 1135
Query 1141 AAGATTTAATGAAGGATTAAGATTCGAGGTAGATCTGCCGTACGTTGACTTTTTACTACG 1200
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1136 AAGATTTAATGAAGGATTAAGATTCGAGGTAGATCTGCCTTACGTTGACTTTTTACTTCG 1195
Query 1201 AGTCAAACGGTCAGAAGAAATCGCGAAGGAGAACGGTACGTGGGAAACGCCTCACCCTTG 1260
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1196 AGTCAAACGGTCTGAAGAAATCGCGAAGGAGATTGGTACGTGGGAAACGCCGCACCCGTG 1255
Query 1261 GCTCAACCTCTTCGTGTCGAAGCGAGACATCGGAGATTTCAATCGGACGGTGTTCAAAGA 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCTTAACCTCTTCGTGTCGAAGCGAGACATCGGAGATTTCAATCGGACGGTGTTCAAAGA 1315
Query 1321 ACTTGTCAAGAACGGAGTCAATGGTCCAATGCTTGTGTACCCACTCTTGCGAAGCAGGTG 1380
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1316 ACTTGTCAAGAACGGAGTCAATGGTCCAATGCTGGTGTACCCACTCTTGCGAAGCAGGTG 1375
Query 1381 GGATGATCGGACGTCCGTGGTTATACCGGAAGAAGGAGAGATATTCTACATTGTGGCATT 1440
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1376 GGATGATCGGACGTCCGTGGTTATACCGGAAG--G-AGAGATATTCTACATTGTGGCATT 1432
Query 1441 GCTTCGGTTCGTGCCGCCGTGTGCGAAAGTCTCTTCGGTAGAGAAAATGGTAGCTCAAAA 1500
||| ||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||
Sbjct 1433 GCTGCGGTTCGTGCCGCCGTGTGCGAAAGGCTCATCGGTTGATAAAATGGTAGCTCAAAA 1492
Query 1501 CCAAGAGATCGTTCATTGGTGTGTCAAAAACGGAATTGATTACAAATTGTATCTTCCTCA 1560
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1493 CCAAGAGATCGTTCATTGGTGTGTCAAAAACGGAATAGATTTCAAATTGTATCTTCCTCA 1552
Query 1561 TTACAAGTCTCAAGAGGAATGGATTCGCCATTTTGGAAACCGATGGTCGAGATTTGTTGA 1620
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1553 TTACAAGTCTCAAGAGGAATGGATTCGCCATTTTGGAAACCAATGGTCGAGATTTGTTGA 1612
Query 1621 TAGGAAAGCTATGTTTGATCCCATGGCTATACTTTCACCGGGTCAAAAGATTTTCAATAG 1680
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TAGGAAATCCATGTTTGATCCCATGGCTATACTTTCACCGGGTCAAAAGATTTTCAATAG 1672
Query 1681 GTCTCTTTGACCCCTCATAttt-ttacttttt-ttacttttcttatt-tttacttttgta 1737
||||| ||||||||| ||||| || ||||| || ||||||||||| ||||||||||||
Sbjct 1673 GTCTCCATGACCCCTCCTATTTCTT--TTTTTCTTCCTTTTCTTATTGTTTACTTTTGTA 1730
Query 1738 ttcttgagttttgtggtctttatgtaattttt-tctgtatttttcttttttcCCAAG-aa 1795
| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||
Sbjct 1731 TCCTTGAGTTTTGTGGTCTTAATGTAATTTTTGTCTGTATTTTACTTTTTTCCCAAGGAA 1790
Query 1796 aaaaaTCAGCTGGTTTTTTATAAAAGGTGGCCTA 1829
||||||||||||||||||| |||| ||||| |||
Sbjct 1791 AAAAATCAGCTGGTTTTTT-TAAA-GGTGGTCTA 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5