BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21900.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894058 jgi|Araly1|894058|Al_scaffold_0006_2054 1954 0.0
> Ahg894058 jgi|Araly1|894058|Al_scaffold_0006_2054
Length=1608
Score = 1954 bits (1058), Expect = 0.0
Identities = 1317/1441 (91%), Gaps = 21/1441 (1%)
Strand=Plus/Plus
Query 246 TGATTATGAAGTTAAGAGAAATTTTAAAGCTGCGA-AACATTTTGCTCTTGAATTGCATT 304
||||||||||||| |||||||| ||||| ||||| ||| |||||||||||| |||||||
Sbjct 180 TGATTATGAAGTTTCGAGAAATTATAAAGTTGCGAGAAC-TTTTGCTCTTGATTTGCATT 238
Query 305 CAGATCTCAAGATTGTTGAAAAAACGGAGGAAGAGGTAGAAGAAGAAGTAATAAGAGATG 364
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 239 CTGATCTCAAGATTGTTGAAAAAAC------AGAGGAAGAAGAAGAAGTAATAAGAGATG 292
Query 365 AAGATAAAAGTGAGTTTCGA-AAAGCTAAAGAATCGATCAAGAAGAGAAGACAAGAGATC 423
|||| ||||||||||||| | | |||||||||||||||||||||||||||| ||||||||
Sbjct 293 AAGAAAAAAGTGAGTTTC-AGAGAGCTAAAGAATCGATCAAGAAGAGAAGAGAAGAGATC 351
Query 424 TCTACAACAAGTGATATGGAGATAGAT-C--TGAATGTACGAAGGAAAGCTCCTTCGCTT 480
||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||
Sbjct 352 TCTACAACAAGTGATATGGAGATAGATCCGATGACGGTACTAAGGAAAGCTCCTACGCTT 411
Query 481 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATTTTTTAGCTATCAAGTCTTTGAAACTT 540
||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 412 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATATTGTAGCTATCAAGTCATTGAAACTT 471
Query 541 GTTCCTGATCACTTGAGGAAGAAGCTCTCGTATCTTGTTAGTGGTTTAGGTGAATTCGAT 600
||||||||||| ||||||||||| ||||||||||||||||||||||| || || |||||
Sbjct 472 GTTCCTGATCATTTGAGGAAGAAACTCTCGTATCTTGTTAGTGGTTTTGGCAAAGTCGAT 531
Query 601 ACACGTCTTATGGAGCTTTTGATTGAAGATTCTCCGAGTGAGATTTGCGCTAAGAACTGT 660
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 532 ACACGTCTTATGGAGCTTTTGATTGAGGATTCTCCGAATGAGATTTGCGCGAAGAACTGT 591
Query 661 GTCCAATTAGTGGAGGATGACTTGGTAAAGATCTTCTGTGACTGTGATAGAGTTAGCTTG 720
||| ||||| ||||||||||||| | |||||| ||||||||||||| ||||||||||||
Sbjct 592 GTCGAATTACAGGAGGATGACTTGATTAAGATCCTCTGTGACTGTGACAGAGTTAGCTTG 651
Query 721 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCGATGACGGATTATACGATAAACCAGTTC 780
|||||||||||||||||||||||||||||||| || |||||||| ||||||| |||||
Sbjct 652 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCCATTACGGATTACACGATAAGGGAGTTC 711
Query 781 TTTAAACGCGCGCCTAACGGATTCCCGTCATTGACTACGTTATCTCTTCAAGGAGCGTTC 840
||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 712 TTTAAACGCGCTCCTAACGGATTCCCGTCATTAACTACGCTATCTCTTCAAGGAGCGTTC 771
Query 841 TGTTTAACAGACAATGCATTGTTGTTGATATCGAAATCATCTCCTCTGCTTCAGTATATT 900
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 772 TGTTTAACAGACATTGCATTGTTGTTGATATCGAGTTCATCTCCTCTGCTTCAGTTTATT 831
Query 901 AACCTCACTGAATGCTCTCTTCTCACTTAT-CGTGCATTGAGGATTCTTGCTGATAAGTT 959
|||||||||||||||||||||||||||| | || || |||| ||||||||||||||||||
Sbjct 832 AACCTCACTGAATGCTCTCTTCTCACTT-TCCGCGCTTTGAAGATTCTTGCTGATAAGTT 890
Query 960 TGGTTCAACTCTTAGAGGGCTTAGTATTGGTGGATGTCAAGGGATTAAAAAGCATAAAGG 1019
|||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||
Sbjct 891 TGGTTCCACTCTTAGAGGGCTTAGCATTGGTGGATGCCAAGGGATTAAATGGTATAAAGG 950
Query 1020 GTTTAGTAGCAGCCTGTATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCGGGACTCGT 1079
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 951 CTTTAGTAGCAGCCTATATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCAGGACTCGA 1010
Query 1080 TAGTGTTAATGATGGTGTTGTCAGAA-GTTTCTTTATGTTCCGTAGTTCGATTCTCACTG 1138
|||||||||||||||||||||||||| | ||||||||||||||||| || | ||||||||
Sbjct 1011 TAGTGTTAATGATGGTGTTGTCAGAACG-TTCTTTATGTTCCGTAGCTCAAATCTCACTG 1069
Query 1139 ATCTATCTCTCGCTAATTGCAATGAGGTGACTGATGAATGCATGTGGCATATTGGGAGAT 1198
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 1070 ATCTATCTCTCGCTAATTGCAATGAGGTTACTGATGATTGCATTTGGCATATTGGGAGGT 1129
Query 1199 ATTGTAAGAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGTCAT 1258
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 ATTGTAAAAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGGCAT 1189
Query 1259 TAGAGTTTATTACTGAGGGTTGCAGATATTTGAAATCACTCAAACTTACAAGTAACAGAT 1318
||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 1190 TAGAGTTTATTACAGAGGGTTGCAAATATTTGAGATCACTCAAACTTACAAGTAACGGAT 1249
Query 1319 TTAGTGACGAATGTATTGCCGCGTTTCTTGAAGTCTCGGGAGGTTCTCTTAGA-GAACTC 1377
||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1250 TTAGTGACGAAGGTATTGCCGCGTGTCTTGAAGTCTCGGGAGGTTCTCTTA-ACGAACTT 1308
Query 1378 TGCCTAAACAAAGTCCGAGATGTTGGTCCAGAGACTGCTTTTTCGCTTGCCAAAGTTTGT 1437
|||||||||||||||||| |||| |||||| | ||||| ||||||||||| ||| |||
Sbjct 1309 TGCCTAAACAAAGTCCGAAATGTCGGTCCACATACTGCCTTTTCGCTTGCTGAAGCTTGC 1368
Query 1438 AAGATGTTACAATTCTTGGACCTCTCGTGGTGTCGGAGACTCAAAGAAGATGACCTAAGA 1497
|||| ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 1369 AAGAGGTTACAATTTTTGGACCTCTCGTGGTGTCGAAGACTCACCCAAGAGGACCTAAGA 1428
Query 1498 CGGATTTTGCGTTGTTGCTCGTCACTTCA-ATCACTCAAGCTATTTGGATGGACGCAGGT 1556
|| |||||| | || |||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1429 CGAATTTTGAGATGCTGCTCGTCACTT-AGATCACTCAAGCTATTTGGATGGACACAGGT 1487
Query 1557 GGAGGATACATATCTTGAAGAACTTTCAAGATCAGACGTTCATATTACCGGATTGAAACT 1616
||| ||||||| |||||||||||||||||||||| |||||||||| |||||| ||||| |
Sbjct 1488 GGATGATACATTTCTTGAAGAACTTTCAAGATCACACGTTCATATCACCGGACTGAAAAT 1547
Query 1617 GACTTCACTCTATGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1676
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GACTTCACTCTACGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1607
Query 1677 A 1677
|
Sbjct 1608 A 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5