BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21910.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489037 jgi|Araly1|489037|fgenesh2_kg.6__2171__AT5G21920.1 597 5e-170
Ahg489036 jgi|Araly1|489036|fgenesh2_kg.6__2170__AT5G21910.1 499 2e-140
> Ahg489037 jgi|Araly1|489037|fgenesh2_kg.6__2171__AT5G21920.1
Length=908
Score = 597 bits (323), Expect = 5e-170
Identities = 370/392 (94%), Gaps = 5/392 (1%)
Strand=Plus/Minus
Query 554 AGGAACACAACTCTTTTATTCATTTTCTAAAGAAAATTTATAC-AAAACTCAGAAATCCA 612
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 907 AGGAACACAACTCTTTTATTCATTTTCTAAAGAAAATTTATACAAAAACTCAGAAATCCA 848
Query 613 AAGATACAG-AGTAATAAAATTACTCGAAAGGTAGATTTTACATTTGAAGCGCAGAAAAG 671
||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 847 AAGATGCAGAAG-AATAAAATTACTAGAAAGGTAGATTTTACATTTGAAGCGCAGAAAAG 789
Query 672 AGTAGA-TATTTTAGACAGGTTCAGGTCATAGAAGCTGAGCTCGGTCTGTGGTCTTTGTG 730
|| || | ||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 788 AGGGGAGT-TTTTAGATAGGTTCAGTTCATAGAAGCTGAGCTCGGTCTGTGGTCCTTGTG 730
Query 731 GCTGCTCAACCTTCTCCTTCTCACCCACTTTGTCTCACTAGAAGCTGGAGAAACGGCTCC 790
||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||
Sbjct 729 GCTGCTCAACCTTCTCCTTCTCATCCACTTTGTCTCACTAGAAGATAGAGAAACCGCTCC 670
Query 791 ATCAGCTGACGGGAGTTCGCAAGGAAGTGCCATAGCCGAGCTGGTGAAGGCGTTGAGAAC 850
||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 TTCAGCTGGCGGGAGCTCGCAAGGGAGTGCCATAGCCGAGCTGGTGAAGGCGTTGAGAAC 610
Query 851 AAGGAACGCCAAAATGGGAGACAAATCTAATCCTCCAAGAGGCGGTATGAATCCCCGGAA 910
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAGGAACGCCAAAATAGGAGACAAATCTAATCCTCCAAGAGGCGGTATGAATCCCCGGAA 550
Query 911 AATGTTCAAGTATGGATCACATAAAGTGCTGA 942
|||||||||||||||||||||||||||||||
Sbjct 549 TATGTTCAAGTATGGATCACATAAAGTGCTGA 518
> Ahg489036 jgi|Araly1|489036|fgenesh2_kg.6__2170__AT5G21910.1
Length=312
Score = 499 bits (270), Expect = 2e-140
Identities = 298/312 (96%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 158 ATGGGGAGGTTTACTACTTCCAGGAAGCTTTTGGCCATAAGCTTGTCGGTACTAGCCGTG 217
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGGTTTACTACGTCCTGGAAACTTTTGGCCATAAGCTTGTCGGTACTAGCCGTG 60
Query 218 CTCTCACCACTCTACATCGACAGATTATCAGAGGAAGATCTAGAAGAGGAAGAAGAACTC 277
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCACCTCTCTACATCGACAGATTATCAGAGGAAGATCTAGAAGAGGAAGAAGAACTC 120
Query 278 TTCAGCTTTATGTTTTCCTTCTCTCTGCTTCTCCTCTTGTTGATTTTAGCCATAGCCTTG 337
||| ||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 121 TTCGGCTTTATGTTTACCCTCTCTCTGCTTCTCCTCTTGTTGATTTTGGCCATTGCCTTG 180
Query 338 TCCTTGTACAGTGACCCGAGCTTGACCAGGTTTGATCCTTACTGGATTCACAGGCTATGT 397
||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCTGTATTGTGACCCTAGCTTGACCAGGTTTGATCCTTACTGGATTCACAGGCTATGT 240
Query 398 GGTTCGTTTGGTGGATTGCTTGTCATCCTCATCCTTCTTGTTTTCGTCTTGATATGCAAA 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTCGTTTGGTGGATTGCTTGTCATCCTCATCCTTCTTGTTTTCGTCTTGATATGCAAA 300
Query 458 GCCTCTGGTTAG 469
||||||| ||||
Sbjct 301 GCCTCTGATTAG 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5