BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21920.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489037 jgi|Araly1|489037|fgenesh2_kg.6__2171__AT5G21920.1 1375 0.0
> Ahg489037 jgi|Araly1|489037|fgenesh2_kg.6__2171__AT5G21920.1
Length=908
Score = 1375 bits (744), Expect = 0.0
Identities = 856/910 (94%), Gaps = 7/910 (1%)
Strand=Plus/Plus
Query 37 AGCTTTGCAACAATGGAGGCGAGTGCGAATGAACCAGCTATGAAAAGCTTGAAATCCAAT 96
|||||||| |||||||||| ||||||||||||||||||| ||||||||||||| || |
Sbjct 1 AGCTTTGCTACAATGGAGGTTAGTGCGAATGAACCAGCTACGAAAAGCTTGAAACCCTTT 60
Query 97 CCTTCAGGACCGATACCGAACTTTTTCGTATCGCTCTCTTCGGCATTTACGCAAACACCT 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCAGGACCGATACCGAACTTTTTCGTATCGCTCTCTTCGGCATTTACGCAAACACCT 120
Query 157 CTTGTGCGTTCGAACAAACCCAATTTGCTTCTTCTACCACCAGTTGCAGACTCCGTCAAA 216
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTTGTGCGTTCGAACAAACCCAATTTGCTACTTCTACCACCAGTTGCAGACTCCGTCAAA 180
Query 217 TTGATTCAAGACTTTCATCAGTCTCTGATTTCTGCTACTGAGAAATT-TAAAGGATTCCT 275
|||||||||||||| |||| ||||||| | ||||||||||||||||| | | || ||| |
Sbjct 181 TTGATTCAAGACTTCCATCGGTCTCTGGTCTCTGCTACTGAGAAATTCTCAGGG-TTCTT 239
Query 276 CCATTCGCTCGCCTCTAAGAACCCTCTCTTTCAGGAAGCGGTTCGCCTATCTTCCGAATT 335
||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||
Sbjct 240 TCATTCGCTCGCCTCTAAAAACCCTCTCCTTCAGGAAGCGGTTCGCTTGTCTTCCGAATT 299
Query 336 TCACATTTTGTGCGACGAGATTCGTTTGAGAAACACTACAAGGGTGAGGTTTGCGATGTC 395
|| | || ||||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 300 TCGCGTTCTGTGCGACGAGATTCGTTTGAAAAACACTACAAGGGTAAGGTTTGCCATGTC 359
Query 396 TAATCACGGATTTGCAGCGGTTCTGCCTGGAGATTCAGTTGCAGGATTGGTGGTTGCTAA 455
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAATCACGGATTTGCCGCGGTTCTGCCTGGAGATTCAGTTGCAGGATTGGTGGTTGCTAA 419
Query 456 TGGTTTGATCAATTTCCTCAACATATATAACACCATCCTTGTCGTCCGTCTAGTACTCAC 515
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TGGGTTGATAAATTTCCTCAACATATATAACACCATCCTTGTTGTCCGTCTAGTACTCAC 479
Query 516 CTGGTTCCCGAGTGCTCCTCCTGCCATTGTTAACCCCCTCAGCACTTTATGTGATCCATA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTGGTTCCCGAGTGCTCCTCCTGCCATTGTTAACCCCCTCAGCACTTTATGTGATCCATA 539
Query 576 CTTGAACATTTTCCGGGGATTCATACCGCCTCTTGGAGGATTAGATTTGTCTCCCATTTT 635
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CTTGAACATATTCCGGGGATTCATACCGCCTCTTGGAGGATTAGATTTGTCTCCTATTTT 599
Query 636 GGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTATGGCACTTCCTTGCGAACTCCC 695
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 600 GGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTATGGCACTCCCTTGCGAGCTCCC 659
Query 696 GTCAGCTGATGGAGCCGTTTCTCCAGCTTCTAGTGAGACAAAGTGGGTGAGAAGGAGAAG 755
| ||||||| ||||| ||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 660 GCCAGCTGAAGGAGCGGTTTCTCTATCTTCTAGTGAGACAAAGTGGATGAGAAGGAGAAG 719
Query 756 GTTGAGCAGCCACAAAGACCACAGACCGAGCTCAGCTTCTATGACCTGAACCTGTCTAAA 815
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 720 GTTGAGCAGCCACAAGGACCACAGACCGAGCTCAGCTTCTATGAACTGAACCTATCTAAA 779
Query 816 ATA-TCTACTCTTTTCTGCGCTTCAAATGTAAAATCTACCTTTCGAGTAATTTTATTACT 874
| | || |||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 780 A-ACTCCCCTCTTTTCTGCGCTTCAAATGTAAAATCTACCTTTCTAGTAATTTTATT-CT 837
Query 875 -CTGTATCTTTGGATTTCTGAGTTTT-GTATAAATTTTCTTTAGAAAATGAATAAAAGAG 932
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 TCTGCATCTTTGGATTTCTGAGTTTTTGTATAAATTTTCTTTAGAAAATGAATAAAAGAG 897
Query 933 TTGTGTTCCT 942
||||||||||
Sbjct 898 TTGTGTTCCT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5