BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21950.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894063 jgi|Araly1|894063|Al_scaffold_0006_2059 1323 0.0
> Ahg894063 jgi|Araly1|894063|Al_scaffold_0006_2059
Length=903
Score = 1323 bits (716), Expect = 0.0
Identities = 861/927 (93%), Gaps = 26/927 (3%)
Strand=Plus/Plus
Query 79 ATGGCTCCCTCGTTTCTAAGCGTCGCAAGATTCGTTGAGGCACTACTCCGCCGGAGATTC 138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCCTCGTTTCTAAGCGTCGCAAAATTCGTTGAGGCACTACTCCGCCGGAGATTC 60
Query 139 TCCTCCGCTGGTCTCTCCTTACAAACCCTATCCATCGACTCCGAAACCACCATACAGTTC 198
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCCGCTGGTCTCTCTTTACAAACGCTATCCATCGACTCCGAAACCACCATACAGTTC 120
Query 199 TGGGGACCACCACCGTCTTCATCATCGGAAAATACACAAAAACCGTCGCTCCTCCTCCTC 258
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGGGACCACCACCGTCTTCAACGTCGGAAAATACACAAAAACCGTCGCTCCTCCTCCTC 180
Query 259 CATGGTTTTGGACCTTCCGCTGTATGGCAATGGAGCCATCAGGTCAAGCCACTCTCTCAC 318
|| |||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 181 CACGGTTTTGGCCCTTCCGCTGTATGGCAATGGAGCCATCAGGTAAAGCCATTCTCCCAA 240
Query 319 TTCTTTCGTCTCTACGTCCCCGACCTAGTCTTCTTCGGCGGCTCCTCTTCCTCCGGTGAG 378
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 241 TTCTTTCGTCTCTACGTCCCCGACCTTGTCTTCTTCGGTGGCTCCTCTTCCTCCGGCGAG 300
Query 379 AACCGGTCGGAGATGTTTCAAGCGTTGTGCATGGGGAAGCTTATGGAGAAGCTCGAGGTC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACCGGTCGGAGATGTTTCAAGCGTTGTGCATGGGGAAGCTTATGGAGAAGCTCGAGGTC 360
Query 439 GAGAGATTCAGTGTCGTTGGGACGAGCTACGGCGGGTTT-GTGGCGTATAATATGGCGAA 497
||||| ||||| ||| |||| |||||||||||| ||||| ||||||||||| ||||||||
Sbjct 361 GAGAGGTTCAGCGTCATTGGTACGAGCTACGGC-GGTTTCGTGGCGTATAACATGGCGAA 419
Query 498 AATGTTTCCGGAGAAAGTGGAGAAGGTGGTGCTTGCGAGCTCCGGTGTTAATTTGCGGAG 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 AATGTTTCCGGAGAAAGTGGAGAAGGTGGTGCTTGCGAGCTCCGGTGTTAATTTGCGGCG 479
Query 558 GAGTGACAACGAGGCGTTTATCGCTAGGGCTAAGTGCCACCGTATCAAGGAGGTGATGCT 617
||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 480 GAGTGACAACGAGGCATTTATCGCGAGGGCTAAATGCCACGGTATCAAGGAGGTGATGCT 539
Query 618 TCCTGCTTCTGCAACAGATCTTAGGAGATTCTCTGGGATGGTTTCTTCTAAGAGACTCGA 677
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TCCTGCTTCTGCGACAGATCTTAGGAGAACCTCTGGGATGGTTTCTTCTAAGAGACTCGA 599
Query 678 TTATGTCCCAGATTTTGTCTTGAACGACTTTTGCCAGAAAATGTATTCGGAAAAGAGAGA 737
||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 600 TTATGTCCCAGATTTTGTCTTGAACGACTTTTGCCAG-----G-A-----AAAAGC-AGA 647
Query 738 GGAAAAAGCAGAACTTCTCGAGGGGCTGAGTATTGGGAAGGATGACAAAACCAACGTTTC 797
| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 648 --A-----C-----TTCTCGAGGGGCTGAGTATTGGGAAGGATGACAAAACAAACGTTTC 695
Query 798 TCCAATTCAACAGGATGTAATGCTGATATGGGGTGAGCAAGATCAAGTTTTTCCTTTAAA 857
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 696 TCCAATTCAACAGGATGTAATGCTGATATGGGGGGAGCAAGATCAAGTTTTTCCTTTAAA 755
Query 858 AATGGCCCATGACCTCAAAGAGATGTTGGGGACTAAGGCGACGCTAAAAGTTATACAAAA 917
|||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 756 AATGGCACATGACCTCAAAGAGATGTTGGGGAGTAAGACGACGCTAAAAATTATACAAAA 815
Query 918 GACATCACATATACCTCAAACGGAGAAGTCCAAAGAATTCAATGGCTTTGTCATGTCTTT 977
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 816 GACATCACATATACCTCAAACGGAGAAGTCCAAAGAATTCAATGGCATTGTCATGTCTTT 875
Query 978 CTTATTACCTCCTTCTCCATCACCATA 1004
|||||||||| | ||||| |||| |||
Sbjct 876 CTTATTACCTACATCTCCTTCACTATA 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5