BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21960.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941690 jgi|Araly1|941690|scaffold_602234.1 990 0.0
Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1 130 2e-29
> Ahg941690 jgi|Araly1|941690|scaffold_602234.1
Length=693
Score = 990 bits (536), Expect = 0.0
Identities = 652/705 (92%), Gaps = 20/705 (3%)
Strand=Plus/Plus
Query 72 TCTCTTTCCCTCTCTGCATTTAGAGATATGGATGCATC-CCCAAAGTACACAGGTGTACG 130
||||| || ||||||||||||||| ||||||| ||||| ||| |||||||||||||||||
Sbjct 4 TCTCTCTCTCTCTCTGCATTTAGACATATGGACGCATCGCCC-AAGTACACAGGTGTACG 62
Query 131 GAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCCAACAGCCGTGACAGGAT 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 63 GAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTCGTCTCCCCAACAGCCGTGAAAGGAT 122
Query 191 CTGGTTAGGCTCTTTCGACTCTGCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTA 250
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 123 CTGGTTAGGCTCTTTCGACTCAGCCGAGAAGGCTGCGCGTGCTTTCGACGCGGCTCTTTA 182
Query 251 CTGTCTTCGTGGCCCCGGAGCACGCTTCAACTTCCCCGACAATCCTCCGGAGATTCCCGG 310
||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||
Sbjct 183 CTGTCTTCGTGGCCCCGGAGCGCGTTTCAACTTCCCCGAGAATCCTCCGGAAATACCCGG 242
Query 311 TGGTCGTTCTCTGACGCCGCAGCAGATTCAGGTCGTAGCTAGCCGTTTCGCCTGCGAGGA 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CGGTCGTTCTCTGACGCCGCAGCAGATTCAGGTCGTAGCTAGCCGTTTCGCCTGCGAGGA 302
Query 371 GGAGCTACTA-CCACCGGAACAACATCATCCGTCACCGCCACGTGGCGACCATAATACCG 429
||||| ||| ||||||||||||||||||||||| ||||||||||||| |||| | |
Sbjct 303 GGAGC-ACTTGCCACCGGAACAACATCATCCGTCTTCGCCACGTGGCGATAATAAGGCGG 361
Query 430 AGGAAGAAGTGATAATTTCGGCACGTGGGGAAATTAATAGTGGTAGTGGTGGGCCTACGT 489
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AGGAAGAAGGGATAATTTCGGCACGTGGGGAAATTAATAGTGGTAGTGGTGGGCCTACGT 421
Query 490 TAGGGCAAGTTGGGGAAGATAATAACAACGAGGGTAATAGTAAT-G--ACACGTCGTCGT 546
||||||||||||||||||||| |||| ||||||||||||||||| | ||||| ||||||
Sbjct 422 TAGGGCAAGTTGGGGAAGATATTAACCACGAGGGTAATAGTAATAGCGACACGACGTCGT 481
Query 547 ATTGGCCTTTAATATGGGAGGAGGAGAATTTTGTAGGTCCTCCTAACTCAGATCATGAGT 606
||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 482 ATTTGCCTTTTATATGGGAGGAGGATAATCTTGTAGGTCCTCCTAACTCAGATCATGAGT 541
Query 607 TCGGTTTTTTCACAGATGATTCAACCAATTTGTACTTCCCGacacaacaacaacaacaac 666
| ||||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 542 TTGGTTTTTTCACGGATGATTCAACCAATTTGTACTTCCC--CACA-CAACA-------- 590
Query 667 aTCAGCTCTCGTCTGATTTTTACTATGATGGAGCTTGTGAAGATGATTTCTCTCATTACA 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 -TCAGCTCTCGTCTGATTTTTACTATGATGGAGCTTGTGAAGATGATTTCTCTCATTACA 649
Query 727 ATATTAACCTTTGGAATTTCTGAGATCCAtttttttGGTGATCTT 771
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 650 ACATTAACCTTTGGAATTTCTGAGATCCATTTTTT-GGTGATCTT 693
> Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1
Length=698
Score = 130 bits (70), Expect = 2e-29
Identities = 158/199 (79%), Gaps = 12/199 (6%)
Strand=Plus/Plus
Query 112 CAAAGTACACAGGTGT-ACGGAAGAGGAAGTGGGGAAAATGGGTGGCTGAGATTC-GTCT 169
||||||||| ||| || | |||||||||| ||||| |||||||| | |||| || | ||
Sbjct 32 CAAAGTACAAAGGAGTGA-GGAAGAGGAAATGGGGGAAATGGGTTTCAGAGA-TCAGACT 89
Query 170 CCCCAACAGCCGTG-ACAGGATCTGGTTAGGCTCTTTCGACT-CTGCTGAGAAGGCGGCG 227
|| |||||| | | || | || ||||| ||||||| ||| | || ||||||||||||||
Sbjct 90 ACCAAACAGCAGAGAAC-GTATTTGGTTGGGCTCTTACGA-TACTCCTGAGAAGGCGGCG 147
Query 228 CGTGCTTTCGACGCGGCTCTTTACTGTCTTCGTGGCCCCGGA-GC-ACGCTTCAACTTCC 285
||||||||||||||||||||||| || || |||||| | | || | | ||||| ||||
Sbjct 148 CGTGCTTTCGACGCGGCTCTTTATTGCCTCCGTGGCAACA-ACGCCAAG-TTCAATTTCC 205
Query 286 CCGACAATCCTCCGGAGAT 304
| || || ||||||| |||
Sbjct 206 CTGATAACCCTCCGGTGAT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5