BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21970.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489043 jgi|Araly1|489043|fgenesh2_kg.6__2177__AT5G21970.1 2300 0.0
> Ahg489043 jgi|Araly1|489043|fgenesh2_kg.6__2177__AT5G21970.1
Length=1526
Score = 2300 bits (1245), Expect = 0.0
Identities = 1429/1517 (94%), Gaps = 16/1517 (1%)
Strand=Plus/Plus
Query 34 GAAGACAATGAGCACCTTGCTCTGCCTTTCTGTTCCCGTCGCCGTTGGACCTCCGTCGCA 93
|||||||||||||||||| || |||| | |||||||| |||||| | ||||||| ||||
Sbjct 21 GAAGACAATGAGCACCTTACTATGCC--TGTGTTCCCG-CGCCGTCGAACCTCCGCCGCA 77
Query 94 TGGGTTTCCGATCATCTTTCACCTCGCCGCCTAACCATCTAACTCCATTATTTCGCCGCC 153
||| || ||| ||||||||||||| |||| ||||||||| ||||| |||||| |||||||
Sbjct 78 TGGCTTACCGGTCATCTTTCACCTTGCCGTCTAACCATCAAACTCTATTATTCCGCCGCC 137
Query 154 ATATAGTTTAAGGTGCTTAAAGCTGAGGTTTTGATGGGAGGTTTACGATGTTGGCTGCAA 213
||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 138 ATACAGTTTAAGGTGCTTAAAGCTGAGCTTTTGATGGGAGGGTTACGATGTTGGCTGCAA 197
Query 214 TTCTACCGGAATGGGAATGCACACAA-TGTGTTTGCGATAATGCCTGAAAGAAACGTTTT 272
||||| | || ||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 198 TTCTA-C-----GGCAATGCCCACAACT-TGTTTGCGATAATGCCTGAAAGAAACGTTTT 250
Query 273 ATACGGAGAATCCTCTTTCAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGGGT 332
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 251 ATACGGAGAATCCTCTTTGAGGCGGGTATGGGTCAGGTTCATGACCAGTAGCAAGCGTGT 310
Query 333 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCGACAGAGAAATGGAA 392
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 TCAAGATAGGAGCAGGGAAAAGAGAGTCCAAGAGCTCGAAATAGCCACAGAGAAATGGAA 370
Query 393 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTGTTGAAGGGTGAGCGAGATATGATAAT 452
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 371 GATAGCTTCTAAAGTGATTTTCTTGATGGAGGTTTTGAAGGGTGAGCGAGATATGATAAT 430
Query 453 GACCGTCAGGTCGTTTGAACAGTATAGGCGGCAGATCAATTTGCCTAAACCACATAAGAT 512
||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 431 GACTGTCAGGTCGTTGGAACAGTATAGGAGGCAGATCAATTTGCCTAAACCGCATAAGAT 490
Query 513 TAGTGATTTCATCAGAAAGTCTCCGAAGTTGTTTGAATTGTATAAAGATCAGAGAGGAGT 572
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 491 CAGTGATTTCATCAGAAAGTCTCCCAAGTTGTTTGAATTGTATAAAGATCAGAGGGGAGT 550
Query 573 CTTGTGGTGCGGGTTGACAGAGGGAGGGGAAGATTTGTTGGACGAGCATGACAAGTTACT 632
||||||||| || ||||||||| ||||||||| |||||||| |||||||| ||||||||
Sbjct 551 CTTGTGGTGTGGATTGACAGAGCAAGGGGAAGACTTGTTGGAAGAGCATGAAAAGTTACT 610
Query 633 TGAAGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 692
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGAGGAGAATGGAGACAAGGCTGCAGAACATGTGACTAGGTGTTTGATGATGTCTGTTGA 670
Query 693 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCGCTTGA 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 671 TAAGAAGCTTCCATTGGATAAGATTGTTCATTTCCGGAGGGATTTCGGGTTGCCTCTTGA 730
Query 753 TTTTAGGATAAACTGGGT-CTACAATTTTCCTCAGCATTTTAAAGTTGTGAAACTTGGGG 811
|||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||||| |
Sbjct 731 TTTTAGGATAAACTGGGTGC-ACAAGTTTCCTCAGCATTTTAAAGTTGGGAAGCTTGGAG 789
Query 812 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATGGAGAAGAGTATCTTGAGCTTGTTTCATGGAATCCAGCTTGGGCTATCACAGAGTTGG 849
Query 872 AGAAAAAGACTTTAGGTATAACCGAGGATTGCGAACACAAGCCAGGTATGCTTTCACTGG 931
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 850 AGAAAAAGACTTTAGGTATAACCGAGGATTGCAAACACAAGCCGGGTATGCTTTCACTAG 909
Query 932 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACCGATACAGAGGGAAGATCG 991
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 910 CTTTCCCCATGAAGTTTCCTCCGTCGTACAAGAAAATGTACAGGTACAGAGGGAAGATTG 969
Query 992 AACATTTTCAGAAACGATCTTATCTGTCTCCTTATGCCGATGCACGTGGACTTGAAGCTG 1051
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 970 AACATTTTCAGAAACGATCTTACCTGTCTCCTTATGCCGATGCACGTGGACTCGAAGCTG 1029
Query 1052 GTTCAAAGGAATTCGACAAGCGGGCAATTGCTGTTATGCACGAACTGCTTAGTTTTACAC 1111
|||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||
Sbjct 1030 GTTCAAAGGAATTCGACAAGCGGGCAATCGCTGTTATGCACGAGCTGCTGAGCTTTACAC 1089
Query 1112 TCGAGAAGAGATTGGTGACAGATCACCTAACCCATTTCAGGAGGGAGTTTGTGATGCCAC 1171
||||||||||||||||||| ||||| || || |||||||||||||||||||||||||| |
Sbjct 1090 TCGAGAAGAGATTGGTGACGGATCATCTGACACATTTCAGGAGGGAGTTTGTGATGCCGC 1149
Query 1172 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AGAAGCTGATGAGGATTTTCTTGAAGCATTGTGGTATCTTCTATGTCTCTGAGAGAGGGA 1209
Query 1232 AGAGATTCAGTGTGTTCTTGACTGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1291
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1210 AGAGATTCAGCGTGTTCTTGACAGAAGGTTACGAAGGGCCAGAGCTGATTGAGAAATGTC 1269
Query 1292 CTTTGATACTTTGGAAAGAAAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1351
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 CTTTGATATTTTGGAAAGAGAAGTTACTGAAGTTTACGGGTTACAGAGGAAGGAAGAGAG 1329
Query 1352 ATATTCAAACTTATAGTGATACTTTGGACATGGAAGAGAGAGAATTACTGGAGAGTGGTT 1411
|||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1330 ATATTCCAACTTATAGTGATACTTTGGACATGGAAGAGAAAGAATTGCTGGAGAGTGGTT 1389
Query 1412 CAGGAGATGAAGATTTGAGTGTTGGATTTGAGAAAgatggtgattatgatgatgtggtaa 1471
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||
Sbjct 1390 CAGGAGATGAAGATTTGAGGGTTGGATTTGAGAAAGATGATGATGATGATGATGTGGTAA 1449
Query 1472 cagatgatgatga-ga--tggacattggggaagtgaatgatgCATATGAAGAGAATAGCA 1528
||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1450 CAGATGATGATGATGAGATGGACATTGGTGAAGTGAATGATGCATATGAAGACAATAGCA 1509
Query 1529 AAGTTTAGACAAAAGTT 1545
|||||||||||||||||
Sbjct 1510 AAGTTTAGACAAAAGTT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5