BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G21990.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489045 jgi|Araly1|489045|fgenesh2_kg.6__2179__AT5G21990.1 3264 0.0
> Ahg489045 jgi|Araly1|489045|fgenesh2_kg.6__2179__AT5G21990.1
Length=2170
Score = 3264 bits (1767), Expect = 0.0
Identities = 2054/2182 (94%), Gaps = 61/2182 (3%)
Strand=Plus/Plus
Query 1 CCGGTCGGTGAATTGAGGAGGTTGAGCGATAAATTTTCCAA-TTCGA-TTCTATATTATT 58
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1 CCGGTCGGTGAATTGAGGAGGTTGAGCGATAAATTTTCCAATTTTGATTTCTATATTATT 60
Query 59 GGAAACTACTTTCGGGTCGGCAAAACAATTCTCCTTCGATTTTCCGATTCTCACAAACTC 118
|||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGAAAGTACTTTCGGGTTGGCTAAACAATTCTCCTTCGATTTTCCGATTCACACAAACTC 120
Query 119 AATCTCGATCCAGATTCCGAGCTTATCCTTCTCTGGCGAATTTCGATTTTCTGTGTTTCC 178
||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||
Sbjct 121 AATCTCGATCCAGATTCCGAGCTTATCCTTCTCCGGCGAATTTCGA-TTTGTGT-TTTCC 178
Query 179 GATCTGATTACAGAGAACCACATCGAAGCTTCGAGaaaaaaaaaCACGATGTTTAACGGG 238
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 179 GATCTGATTACAGAGAACCACATCGAAGCTTCCAG----AAAAA-ACGATGTTTAACGGA 233
Query 239 TTAATGGATCCTGAGATGATTCGGCTCGCTCAAGATCAGATGAGTCGTATGACTCCTGCT 298
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 234 TTAATGGATCCTGAGATGATTCGTCTTGCTCAAGATCAGATGAGCCGTATGACTCCTGCT 293
Query 299 GATTTCGCTAGGATCCAACAACAGATGATGTCAAATCCAGATTTGATGAATATGGCAACA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GATTTCGCTAGGATCCAACAACAGATGATGTCAAATCCAGATTTGATGAATATGGCAACG 353
Query 359 GAGAGTATGAAGAACATGAGGCCTGAAGATTTGAAACAAGCTGCGGAACAGCTTAAGCAT 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 354 GAGAGTATGAAGAACATGAGGCCTGAAGATTTGAAACAAGCTGCTGAACAGCTTAAGCAT 413
Query 419 ACTCGGCCTGAAGATATGGCTGAGATTAGCGAGAAGATGGCTAAAGCTTCCCCTGAAGAT 478
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 414 ACACGGCCTGAAGATATGGCTGAGATTAGCGAGAAGATGGCGAAAGCTTCCCCTGAAGAT 473
Query 479 ATTGCAGCTATGCGTGCTCATGCTGATGCTCAATTTACTTATCAGATCAATGCAGCTCAG 538
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 474 ATTGCAGCTATGCGTGCTCATGCTGATGCTCAGTTCACTTATCAAATCAATGCAGCTCAG 533
Query 539 ATGCTTAAAAAACAGGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAG 598
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 534 ATGCTTAAACAACAGGGAAACGAGCTTCATAGCCGAGGAAATTTCAGTGATGCTGCTGAG 593
Query 599 AAATACTTGCGTGCGAAGAACAATCTGAAAGAGATTCCATCTTCTAAAGGTGGAGCAATT 658
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 594 AAATATTTGCGTGCGAAGAACAATCTGAAAGACATTCCATCTTCTAAAGGTGGAGCACTT 653
Query 659 TTGTTGGCTTGTTCTCTCAATCTAATGTCGTGTTATTTGAAGACGAATCAGCATGAAGAG 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 654 TTGTTGGCTTGTTCTCTCAATCTAATGTCTTGTTATTTGAAGACGAATCAGCATGAAGAG 713
Query 719 TGCATAAAGGAAGGTTCTGAGGTTTTGGGATATGATGCAAGGAATGTCAAAGCCCTATAC 778
||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 714 TGCGTAAAGGAAGGTTCTGAGGTTTTGGCATCTGATGCAAGGAATGTCAAAGCCCTATAC 773
Query 779 AGAAGGGGTCAAGCTTACAGAGATTTGGGCTTGTTTGAAGATGCCGTCTCTGATCTAAGC 838
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 774 AGAAGGGGTCAAGCTTACAGAGATCTAGGCTTGTTTGAAGATGCCGTCTCTGATCTAAGC 833
Query 839 AAGGCCCATGAAGTTTCCCCAGAAGATGAGACAATTGCCGATGTGTTAAGAGATGTTAAG 898
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 AAGGCCCATGAAGTTTCCCCAGAAGATGAGACAATTGCCGATGTGCTAAGAGATGTTAAG 893
Query 899 GAAAGATTGGCTGTCGAGGGACCTGGCAAGGCATCAAGAGGTGTGGTGATTGAAGACATA 958
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAAAGATTGGCTGTCGAGGGGCCTGGCAAGGCATCAAGAGGTGTGGTGATTGAAGACATA 953
Query 959 ACTGAAGAAAATAATGTTACTTCCGGAGAGAAT-AAAAAA-C-C-------G----T--- 1001
|||||||||||||||||||||||||||| |||| |||||| | | | |
Sbjct 954 ACTGAAGAAAATAATGTTACTTCCGGAGGGAATAAAAAAACCTCTAAAGAGGTTACTGGG 1013
Query 1002 -CA-AA--AG-A-G----GCTAATGGTCATGCTCAGGGCGTAAAGACTGATGTTGATGGA 1051
|| || || | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACACAACGAGAAGGAAATGTTAATGGTCATGCTCAGGGCGTAAAGACTGATGTTGATGGA 1073
Query 1052 TTGCAAGCTCTCAGAGATAATCCAGAAGCAATCAGAACTTTCCAGAATTTCATTTCAAAA 1111
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1074 TTGCAGGCTCTCAAAGATAATCCAGAAGCAATCAGAACTTTCCAGAACTTCATTTCAAAA 1133
Query 1112 ACTGATCCCGATACACTTGCTGCTCTAAGCGGAGGCAAAGCTGGAGACATGTCACCGGAC 1171
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1134 ACTGATCCCGATACACTTGCTGCTCTGAGCGGAGGCAAAGCTGGAGACATGTCACCGGAC 1193
Query 1172 ATGTTCAAAACTGCGTCAAGTATGATAGGCAAAATGTCACCTGAAGAGATTCAAAAAATG 1231
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 ATGTTCAAAACTGCGTCGAGTATGATAGGCAAAATGTCACCTGAAGAGATTCAAAAAATG 1253
Query 1232 GTTCAAACAGCCTCTTCGTTTAAAGGAGATAACCCTTTCGCCCCGACTGCGCCATCTACC 1291
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1254 GTTCAAACAGCCTCTTCGTTTAAAGGAGATAACCCTTTCGCCCCAACTGCGCCATCTACA 1313
Query 1292 GAAAACGGTTTTACACCCACACCTGACATGCTTAAACTTGCATCTGATATGATGGGTAAG 1351
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1314 GAAAACGGTTTTACACCCACACCTGACATGCTTAAACTTGCATCTGATATGATGAGTAAG 1373
Query 1352 ATGTCACCAGAAGAGCGTGAGAGGATGTTTAACATGGCATCGTCTTTGAAAGCAAACGCT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATGTCACCAGAAGAGCGTGAGAGGATGTTTAACATGGCATCGTCTTTGAAAGCAAACGCT 1433
Query 1412 CCAGCTTCAACATCATACGGCAATGCAGAAGCATCTGAACCACGGGAAAGTTTAGGAGCG 1471
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CCAGCTTCAACATCATATGGAAATGCAGAAGCATCTGAACCACGGGAAAGTTTAGGAGCG 1493
Query 1472 AGTGGGAGTTCTTCGGGAAATTCCTTTGTGGCTCCAAGAAGCGGTTTCGAACCAAGCATC 1531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GGTGGGAGTTCTTCGGGAAATTCCTTTGTGGCTCCAAGAAGCGGTTTCGAACCAAGCATC 1553
Query 1532 CCTTCTGCTCCGCCTGCTGACTTACAGGAACAGATGAGAAACCAAATGAAAGATCCAGCG 1591
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1554 CCTTCTGCTCCGCCTGCTGACTTGCAGGAACAGATGAGAAACCAAATGAAAGATCCAGCG 1613
Query 1592 ATGCGACAGATGTTCACGTCTATGATAAAGAACATGAACCCTGAGATGATGGCTAGCATG 1651
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1614 ATGCGACAGATGTTCACATCTATGATAAAGAACATGAACCCAGAGATGATGGCTAGCATG 1673
Query 1652 AGCGAACAATTTGGAATGAAGCTTTCTCAAGAAGACGCTGCAAAAGCTCAGCAAGCCATG 1711
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1674 AGCGAACAATTCGGAATGAAGCTTTCTCAAGAAGATGCTGCAAAAGCTCAGCAAGCCATG 1733
Query 1712 GCTTCTCTTTCTCCCGACGCCTTGGAGAAAATGATGCGATGGGCGGATCGGGCTCAAACC 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GCTTCTCTTTCTCCCGACGCCTTGGAGAAAATGATGCGATGGGCGGATCGGGCTCAAACC 1793
Query 1772 GGGATGGAGAAAGCGAAGAAAGCAAAGAAGTGGTTGTTCGGAAAAGGCGGATTGATCTTT 1831
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1794 GGGATGGAGAAAGCGAAGAAAGCAAAGAAGTGGTTACTCGGAAAAGGCGGATTGATCTTT 1853
Query 1832 GCAATATTAATGCTCGTTTTAGCAATGGTCCTTCACCGTCTCGGCTATATTGGAAACTAG 1891
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1854 GCTATATTAATGCTCGTTTTGGCAATGATCCTTCACCGTCTCGGCTATATTGGAAACTAG 1913
Query 1892 AGGAAACAACGGTATCTTAAGGCTTAAT--------CCTTCGTGAAGATAAAACCAGTCT 1943
|||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 1914 AGGAAACAACGGTATCTTAAGGCTTAATTAATAATACCTTCGTGAAGACCAGACCAGTCT 1973
Query 1944 TCGGTGGGTTCGTTTAGTTTGTAAAACTGTAACATCGTTTTATCTTCTTTTTCTTTCCTC 2003
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1974 TCGGTGGGTTCGT--AGTTTGTAAAACTGTAACATCGTTT-ATCTTCTTTTTCTTTCCTC 2030
Query 2004 TAACTCTCAGCTTTTTGTTAGTCCACTTGTGTCTAAATTTCTTTACACTTTCTTCTGTAG 2063
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2031 TAACTCTCGGCTTTTTGTTGGTCCACTTGTGTCTAAATTTCTTCACACTTTCTTCTGTAG 2090
Query 2064 TGAATTTTAAA-TTAGAGAAAATACGAATATTTCCTT---A--TATTCGTTATTTT-AT- 2115
|| ||||||| ||||| ||||||||| ||||||||| | ||||||||||||| ||
Sbjct 2091 TG--TTTTAAAATTAGAAAAAATACGATTATTTCCTTTTTAGATATTCGTTATTTTTATT 2148
Query 2116 --A-AA-CATAATTATGCTTCT 2133
| || ||||||||| |||||
Sbjct 2149 TTATAAACATAATTATTCTTCT 2170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5