BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22000.2
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489047 jgi|Araly1|489047|fgenesh2_kg.6__2181__AT5G22000.1 2453 0.0
> Ahg489047 jgi|Araly1|489047|fgenesh2_kg.6__2181__AT5G22000.1
Length=1769
Score = 2453 bits (1328), Expect = 0.0
Identities = 1548/1648 (94%), Gaps = 40/1648 (2%)
Strand=Plus/Plus
Query 1 ATGAATCTAGGGTTTTGTTTTCTCCCATAACCCTAGATTTTCTTCCATCAATCTTATATT 60
||||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 110 ATGAATCTAGGGTTTTGTTTTCTCCCACAACCCTAGATTTTC-T---TC---C------- 155
Query 61 TTTCTCATTTCTTCTTCTCCGTTTTAGCTCATCTCCCGATTCATCTCGATTTCCATGGAG 120
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 156 --TCTCATTTCTTCTTCTCCGTTTTAGCTCATCTTCCGATTCATCGCGATTTCCATGGAG 213
Query 121 GTTAG-GGTTTCCACGACGACGTCGGAGGGGCATTTGACTTCGGCAGCAGCTTTTGTGGA 179
| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 214 G-GAGCGGGAGATACGACGACGTCGGAGGGGCATTTGACTTCGGCAGCAGCTTTTGTTGA 272
Query 180 AGGGGGAATTCAAGATGCTTGTGATGATGCTTGTAGCATTTGTCTTGAATCCTTCTGCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AGGGGGAATTCAAGATGCTTGTGATGATGCTTGTAGCATTTGTCTTGAATCCTTCTGCGA 332
Query 240 AAGCGATCCTTCTACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATTCTTGA 299
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AAGCGATCCATCCACTTTGACTAGTTGCAAGCATGAGTATCATCTTCAATGCATTCTTGA 392
Query 300 GTGGTGTCAAAGAAGCTCACAGTGCCCTATGTGTTGGCAATCAATTAGTCTCAAAGACCC 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 393 ATGGTGTCAAAGAAGCTCACAGTGCCCAATGTGTTGGCAATCAATTAGTCTCAAAGACCC 452
Query 360 CACAAGTCAGGAGTTGCTTGAGGCTGTGGAACAGGAGAGGAATTTCCGCTTCAATCCAAC 419
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 453 CACAAGTCAGGAGTTGCTTGAGGCTGTTGAACAGGAGAGGAACTTCCGCTTCAATCCATC 512
Query 420 TAGAAATGCCACCATATTTCGTCATCCAACTCTTGGTGATTTTGAATTACAACATCTTCC 479
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 513 TAGAAATGCCACCATATTTCGTCACCCCACTCTTGGTGATTTTGAATTACAACATCTGCC 572
Query 480 AGTGGGGGTGGATAATGCTGAGATTGAAGAACGAATCATTCAGCACTTGGCTGCTGCTGC 539
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AGTGGGGGTTGATAATGCAGAGATTGAAGAACGAATCATTCAGCACTTGGCTGCTGCTGC 632
Query 540 TGCTATGGGACGAGCAAGACATGGGGTAAGAAGGGAAGGCCACAGAAGCAGGTCGTCAAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TGCTATGGGACGAGCAAGACATGGGGTAAGAAGGGAAGGCCACAGAAGCAGGTCGTCAAG 692
Query 600 TCAAGGACATCAACAGTTCATGGTGTTCTCTTCGCAACCTAATGCTTCTTCTCCTCCACC 659
||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 693 TCAAGGACATCCACAGTTTATGGTGTTCTCTTCACATCCTAATGCTTCTTCTCCTCCACC 752
Query 660 TCATCCTCCCATGCCTTCTTCTCCATCTCAGAGAGATGAGAGTGACACAGTGTCAAACCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 753 TCATCCTCCCATGCCTTCTTCTCCATCTCAGAGAGATGAGAGTGACACAGTCTCAAACCT 812
Query 720 TCCTCACAATGCTTTAGGGGAGGGTTCTCATCAGTCAAACACGCAGCCACCAACTTCTTC 779
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TCCTCACAATACCTTAGGGGAGGGTTCTCATCAGTCAAACACGCAGCCACCAACTTCTTC 872
Query 780 TCATCCCCGCCAGGTTTCTCCCTCAGCATCTGATTCAAACAGCAGGCCTCTTAATCAATC 839
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 873 TCATCCCCGCCAGGTTTCTCCTTCGGCATCTGATTCAAACAGCAGGCCTGTTAATCAATC 932
Query 840 TTCCCCAAGTGAACAAGATAGAGCTGGACCATCAGAACTCCAGTCATTTTCGGAATCACT 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TTCCCCAAGTGATCAAGATAGAGCTGGACCATCAGAACTCCAGTCATTTTCGGAATCACT 992
Query 900 TAAGTCTCGATTAAACGCTGTCTCCACGAGATACAAAGAATCGATATCAAAGAATACAAG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 AAAGTCTCGATTAAACGCTGTCTCCACGAGATACAAAGAATCGATATCAAAGAATACAAG 1052
Query 960 GAACTGGAAAGATAGACTTTTTTCTCGCAACACGTCCATGGCAGATCTTGGCTCTGAGGT 1019
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1053 GAACTGGAAAGATAGACTTTTTTCTCGCAACACTTCCATGGCTGATCTTGGCTCTGAGGT 1112
Query 1020 TAAAAGAGAGGTCAGTGCCGGAATCGCCACTGTGTCCCGCATGATGGAACGTTTAGAAAC 1079
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1113 TAAAAGAGAGGTCAGCGCCGGAATCGCCACTGTGTCCCGCATGATGGAACGTCTAGAAAC 1172
Query 1080 GAGAGAAAACAGTAGACCCAGCACTGCATCTGTATCAGATGTCTCTGAAAATCACACTCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1173 GAGAGAAAACAGTAGACCCAGCACTGCATCTGTATCAGATGTCTCTGAAAATCACACCCC 1232
Query 1140 TGAAACAAACAATGAGCACAATAG-AG--CAGCAGCGGGTGATGAACATTCTGTGAATGA 1196
|||| ||||||||||||| |||| || ||| ||||| ||||||||||||| |||||||
Sbjct 1233 TGAATCAAACAATGAGCATAATAATAGATCAGAAGCGGATGATGAACATTCTATGAATGA 1292
Query 1197 AAGAGGTGTTAAAGAAACATGTGCGACTGGTTCTGGTTCAAGCTAATAAGTGAGTGCCAG 1256
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1293 AAGAGGTGTTAAAGAAACATGTGCGACTGGTTCTGGTTCAAGCTAATAAGCAAGTGCCAG 1352
Query 1257 CATCTTGTTGGCAAAGAGAGAGGAAGATGTTGTCCATTGTGAAATTCTGATAATATATAT 1316
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CACCTTGTTGGCACAGAGAGAGGAAGATGTTGTCCATTGTGAAATTCTGATAATATATAT 1412
Query 1317 ATA--CAGAGTCAGAAGTCTCAAAAGTGTGG-AGCATAGGAAGAAGGTTATTATTGATAA 1373
||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 1413 ATAAACAGAGTCGGAAGTCTCAAAAGTGTGGGAGCATAGGAAGAAGGTT-T-ATTGATAA 1470
Query 1374 -AGAAAAAGAGTTTTCCGATTATCAATAAATAAGAAAA-G-TTATATATGACCAAAAGGA 1430
| |||| |||||||| |||| |||||||||||||||| | ||||||||||||||||| |
Sbjct 1471 CATAAAA-GAGTTTTCTGATTCTCAATAAATAAGAAAAAGGTTATATATGACCAAAAGTA 1529
Query 1431 GGCCTTAAAGACGCCT-CTTTCTGTGTTATGTCAAACAAACaaaaaaaaaaCTAAAGAGA 1489
|||||||| ||||||| ||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1530 GGCCTTAA-GACGCCTGCTT-CTGTGTTGTGTCAAACAAACGAAAAAAAAACTAAAGAGA 1587
Query 1490 -AAAATTAGAGTAAAAGACCTGTGTGGGGTTGTTGGTTATTTGGTCGGTCTGTTGTAAAT 1548
||||| |||||||| ||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1588 GAAAAT-AGAGTAAA-GAC-TATGTGGG-TTGTTGGTTATTTGGTCGGTCTGTTGTAAAT 1643
Query 1549 TCACATTGTCGTTCACATTACGGATTTCTATGAATTTCTACTTATGTATCTTCAAAAACT 1608
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1644 TCA--TTGTCGTTCACATTACGGATTTATATGAATTTCTACTTATGTATCTTCAAAAACT 1701
Query 1609 TGGTCTAGCAAAACCAATTTAATGTATC 1636
||| |||||||||||||||| |||||||
Sbjct 1702 TGGCCTAGCAAAACCAATTTGATGTATC 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5