BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22020.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489050 jgi|Araly1|489050|fgenesh2_kg.6__2184__AT5G22020.1 2001 0.0
Ahg470908 jgi|Araly1|470908|fgenesh2_kg.1__862__AT1G08470.1 294 1e-78
> Ahg489050 jgi|Araly1|489050|fgenesh2_kg.6__2184__AT5G22020.1
Length=1322
Score = 2001 bits (1083), Expect = 0.0
Identities = 1252/1333 (94%), Gaps = 14/1333 (1%)
Strand=Plus/Plus
Query 14 AGTGAGAGCTCTCTTTGCATTGCTCACCCACCAATGGATCTACCTACCCTTCTTCTTCTT 73
||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||| |
Sbjct 1 AGTGAGAGCTCTCTTGGCATTGCTCAACCACCAATGGATCTACCTA-CC--CTTCTTC-T 56
Query 74 CTCCTCCTTTTAAACCCTAAAAGTTTCTCT-TTCCTTCAACAACGCCACAATCATGGCTT 132
||| ||||||||||||| || ||||||| | || ||||||||| | ||||||||||||
Sbjct 57 -TCC-CCTTTTAAACCCT--AATTTTCTCTCTACC-TCAACAACGACTCAATCATGGCTT 111
Query 133 TGTTCTTATCTCCTAAAACCATCACTCTTCTCTTCTTCTCCCTCTCCCTCGCACTCTACT 192
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 112 TGTTCTTATCTCCTAAAGCCATCACTCTTCTCTTTTTCTCCCTCTCCCTCGCACTCTACT 171
Query 193 GCAGCATCGATCCTTTCCACCACTGCGCCATTTCCGATTTCCCCAATTTCGTCTCTCACG 252
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 172 GCAGCATCGACCCTTTCCACCACTGCGCCATCTCCGATTTCCCCAATTTCGTCTCTCACG 231
Query 253 AAGTTATCTCTCCACGTCCCGACGAAGTTCCATGGGAGAGAGATTCACAAAATTCACTTC 312
||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 232 AAGTTGTCTCTCCACGTCCCGATGAAGTTCCATGGGAGAGAGATTCGCAAAATTCACTTC 291
Query 313 AGAAATCAAAGATTCTGTTTTTTAACCAAATCCAAGGTCCAGAGAGCGTCGCCTTTGATT 372
|||||||||||||||||||| | |||||| | |||||||||||||||||||| |||||||
Sbjct 292 AGAAATCAAAGATTCTGTTTCTCAACCAAGTACAAGGTCCAGAGAGCGTCGCGTTTGATT 351
Query 373 CTCTCGGACGTGGTCCGTACACAGGCGTTGCTGATGGTAGGGTTTTGTTTTGGGATGGAG 432
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
Sbjct 352 CTCTCGGACGTGGTCCGTACACCGGAGTTGCTGATGGTAGGGTTTTGTTTTGGAATGGTG 411
Query 433 AGAAATGGATTGATTTCGCTTATACTTCGAGTAATCGATCGGAGATTTGTGATCCGAAGC 492
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGAAATGGACTGATTTCGCTTATACTTCGAGTAATCGATCGGAGATTTGTGATCCGAAGC 471
Query 493 CTTCTGCTTTGAGTTACTTGAGGAATGAACATATATGTGGTCGTCCT-TTAGGTCTTCGT 551
||||||| |||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 472 CTTCTGCATTGAGTTACTTGAGGAATGAGCATATATGTGGTCGTCCTCTT-GGTCTTCGT 530
Query 552 TTCGATAAGAGAACCGGAGATTTGTATATAGCTGATGCTTATATGGGACTTTTGAAAGTT 611
||||||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 531 TTCGATAAGAGAACCGGAGATTTGTATATCGCCGACGCGTATATGGGACTTTTGAAAGTT 590
Query 612 GGTCCTGAAGGTGGTTTAGCAACGCCGCTTGTAACTGAAGCTGAAGGTGTGCCGTTGGGG 671
|||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct 591 GGTCCTGAAGGTGGCTTAGCAATGCCGCTTGTAACTGAAGCTGAGGGTGTGCCATTGGGT 650
Query 672 TTTACTAATGATCTTGACATTGCTGATGATGGAACTGTTTACTTTACAGATAGCAGCATT 731
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 651 TTTACTAATGATCTTGACATTGATGATGATGGAACTGTTTACTTTACAGATAGCAGTATC 710
Query 732 AGTTACCAGAGGAGGAACTTCTTGCAGCTCGTTTTCTCTGGAGACAATACTGGGAGGGTT 791
| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 711 AATTACCAGAGGAGGAATTTCTTGCAGCTCGTCTTCTCTGGAGACAACACTGGGAGAGTG 770
Query 792 CTAAAGTATGATCCAGTAGCTAAGAAAGCTGTTGTTTTGGTCTCAAATCTTCAGTTTCCG 851
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 771 CTAAAGTATGATCCAATAGCTAAGAAAGCTGTTGTTTTAGTCTCAAATCTTCAGTTTCCT 830
Query 852 AATGGTGTCTCTATCAGCAGAGACGGTTCTTTCTTTGTATTCTGCGAAGGAGATATTGGA 911
|||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct 831 AATGGTGTGTCTATCAGCAAAGACGGTTCTTTCTTTGTATTCTGTGAAGGCGATATTGGA 890
Query 912 AGCCTACGAAGATACTGGTTGAAAGGCGAGAAAGCTGGAACGACAGATGTGTTTGCGTAT 971
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 891 AGCCTACGAAGATACTGGTTAAAAGGCGAGAAAGCTGGAACGACAGATGTGTTTGCGTTT 950
Query 972 TTACCAGGGCATCCTGATAACGTAAGAACCAACCAAAAGGGTGAATTTTGGGTAGCGCTT 1031
||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 951 TTACCGGGGCATCCTGATAATGTAAGAACGAACCAAAACGGTGAATTTTGGGTAGCGCTT 1010
Query 1032 CATTGCAGACGCAACTACTACTCATACTTAATGGCAAGATATCCTAAGCTGAGGATGTTC 1091
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1011 CATTGCAGACGCAACTACTACTCATACTTAATGTCAAGATATCCTAAGCTGAGGATGTTC 1070
Query 1092 ATACTGAGACTGCCAATCACTGCGAGAACTCACTACTCGTTCCAGATAGGGTTACGGCCG 1151
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1071 ATACTGAGACTGCCAATCACTGCAAGAACACACTACTCGTTCCAGATCGGGTTACGGCCG 1130
Query 1152 CACGGGTTGGTGGTTAAGTATAGTCCTGAAGGGAAGCTTATGCATGTT-TTGGAAGATAG 1210
||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 1131 CACGGATTGGTGGTTAAGTATAGTCCTGAAGGGAAGCTTATGCAGGTTCTTG-AAGATAG 1189
Query 1211 TGAAGGGAAAGTTGTGAGATCAGTAAGTGAAGTGGAAGAAAAAGATGGGAAGCTTTGGAT 1270
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1190 TGACGGCAAAGTTGTGAGATCAGTAAGTGAAGTGGAAGAAAAAGATGGGAAGCTTTGGCT 1249
Query 1271 GGGAAGTGTGTTGATGAACTTTGTTGCTGTCTATGACCTCTGATTACTTGACCTATACGT 1330
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1250 GGGAAGTGTGTTGATGAACTTTGTTGCTGTCTATGACCTCTGATTGCTTGACCTATACGT 1309
Query 1331 AAACCACTTCACT 1343
||||||| |||||
Sbjct 1310 AAACCACATCACT 1322
> Ahg470908 jgi|Araly1|470908|fgenesh2_kg.1__862__AT1G08470.1
Length=1376
Score = 294 bits (159), Expect = 1e-78
Identities = 667/902 (74%), Gaps = 76/902 (8%)
Strand=Plus/Plus
Query 444 GATTTCGCTTATACTTCGAGTAATCGATCGGAGATTTGTGATCCGAAGCCTTCTGC-TTT 502
|||||||| |||||||||| ||||| || ||| | |||||||| ||||| || | |||
Sbjct 407 GATTTCGCCTATACTTCGAACAATCGGTCAGAGCTATGTGATCCAAAGCCATC-ACTTTT 465
Query 503 -GAGTTACTT-GAGGAATGAACATATATGTGGTCGTCCTTTAGGTCTTCGTTTCGATAAG 560
|| |||||| ||| ||||| |||| |||||||| |||||||||||||| ||||| ||
Sbjct 466 GGA-TTACTTAAAGG-ATGAAGATATCTGTGGTCGGCCTTTAGGTCTTCGATTCGACAAA 523
Query 561 AGAACCGGAGATTTGTATATAGCTGATGCTTATAT-GGGACTTTTGAAAGTTGGTCCTGA 619
| ||| || |||||||| || || ||||| ||| | |||| | ||||||||||||||||
Sbjct 524 AAAACTGGGGATTTGTACATTGCAGATGCGTATTTGGGGA-TAATGAAAGTTGGTCCTGA 582
Query 620 AGGTGGTTTAGCAACGCCG-CTT-GTAACTGAAGCTGAAGGTGTGCCGTTGGGGTTTACT 677
||| ||||||||||| | || ||| || || || |||||||| ||| | |||||
Sbjct 583 AGGAGGTTTAGCAAC-TTGTGTTACAAAC-GAGGCAGATGGTGTGCCTTTGAGATTTACC 640
Query 678 AATGATCTTGACATTGCTGATGATGG-AACTGTTTACTTTACAGATAGCAGCAT-TAGTT 735
|||||||||||||||| ||| | || || |||||||||||| |||||||| | | ||
Sbjct 641 AATGATCTTGACATTGATGACCAAGGCAA-TGTTTACTTTACTGATAGCAG-TTCTTTTT 698
Query 736 ACCAGA-GGAGGAACTTCTTGCAGCTCG-TTTTCTCTGGAGACA-ATA-CTGGGAGGGT- 790
||| | | ||||| ||| ||| | | || |||| || || | | | | ||||||||
Sbjct 699 TCCA-ACGAAGGAAATTCATGC-TTTTGATTGTCTCGGGGGA-AGACAGC-GGGAGGGTG 754
Query 791 TCT-AAAGTATGATCCAGTAGCTAA-GAAAGCTGTTGTTTTGGTCTCAAATCTTCAGTTT 848
| | ||| || ||||| | | || || | || | | || |||||| ||||||
Sbjct 755 T-TGAAA-TACAATCCAAAAACAAAGGAGA-CTACCACTCTCGTAAGAAATCTCCAGTTT 811
Query 849 CCGAATGG-TGTCTCTATCAGCAGAGACGG-TTCTTTCTTTGTATTCTGCGAAGGA-GAT 905
|| ||||| | | || || ||| |||||| | |||| || |||| || |||||| |
Sbjct 812 CCTAATGGAT-TATCCCTCGGCAAAGACGGCTCCTTT-TTCATATTTTGTGAAGGATCA- 868
Query 906 ATTGGAAGCCTAC-GAAGATACTGGTTGAAAGGCGAGAAAGCTGGAACGACAGATGTGTT 964
|||||||| ||| ||| ||||||||||||||| || |||||||||||| |||| ||| |
Sbjct 869 ATTGGAAGATTACGGAA-ATACTGGTTGAAAGGAGAAAAAGCTGGAACGTCAGAAGTGGT 927
Query 965 TGCGTAT-TTACCA-GGGCAT-CCTGATAACGTAAGAACCAACCAAA-A-GGGTGAATTT 1019
|| | | ||| || ||| | || || ||| | | | ||| |||| | ||| | ||||
Sbjct 928 AGC-TCTATTA-CATGGG-TTCCCAGACAACATCCGCA-CAAACAAAGACGGG-G-ATTT 981
Query 1020 -TGGGTAGCGCTTCATTG-CAGACGCAAC-TACTACTCATACTTAATGGCAAG-AT-ATC 1074
||||| ||| | || || || | | ||| || | | || || | ||||| | || | |
Sbjct 982 CTGGGTGGCGGTGCACTGCCACA-GAAACATA-TTCACACACGTGATGGC--GCATCACC 1037
Query 1075 CTAAGCTGAGGATGTTCATACTG-AGACTGCC-A-ATCACTGCGAGAACTCACTACTCGT 1131
| | | |||||| |||| | ||| || ||||| | |||| || || ||| |||| |
Sbjct 1038 CGAGGGTGAGGAAGTTCTTTCTGAAG-CTGCCGATATCAGTG-AAG-TTTCAGTACTTGC 1094
Query 1132 TCCAGATA-G-GGTTACGGCCGCACG-GGTTGG-TGGTTAAGTATAGTCCTGAAGGGAAG 1187
| ||| || | |||| |||| || | || ||| | || ||||| ||| |||||||||
Sbjct 1095 TGCAGGTAGGTGGTT--GGCCTCATGCGG-TGGCT-GTGAAGTACAGTGAAGAAGGGAAG 1150
Query 1188 CTTATGCATGTTTTGGAAGATAGTGAAGGGAAAGTTGTG-AGATCAGTAAGTGAAGTGGA 1246
| | | || ||||||||||| |||||||||| ||| || |||| |||||||||||
Sbjct 1151 GTGCTAAAGGTGTTGGAAGATAGCAAAGGGAAAGTGGTGAAG-GCAGTGAGTGAAGTGGA 1209
Query 1247 AGAAAAAGATGGGAAGCTTTGGATGGGAAGTGTGTTGATGAACTTTG-TTGCTGTCTATG 1305
|| ||||||||||||||||||||||||||||| |||||| |||| |||| || ||||
Sbjct 1210 GGAGAAAGATGGGAAGCTTTGGATGGGAAGTGTATTGATGT-CTTTCATTGCCGTGTATG 1268
Query 1306 AC 1307
||
Sbjct 1269 AC 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5