BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22040.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489055 jgi|Araly1|489055|fgenesh2_kg.6__2189__AT5G22040.1 1543 0.0
> Ahg489055 jgi|Araly1|489055|fgenesh2_kg.6__2189__AT5G22040.1
Length=1058
Score = 1543 bits (835), Expect = 0.0
Identities = 997/1071 (93%), Gaps = 28/1071 (3%)
Strand=Plus/Plus
Query 23 TTCTTCTTCCGCTTGAGTGGCTTCGGGTCAGATTTAAAAGGAAGTAAAAATGAGAAGACA 82
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 TTCTTCTTCCGCTTGAGTGGCTTCGGGTCAGATTTGAGAGGAAGTAAAAATGAGAAGACA 60
Query 83 GGGAAACTTTGCGGACTCATCACCTGCCAGTGCATATGGAGCTGGACAGATACAGGATC- 141
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 61 GGGAAACTTTGCGGA--C-TCACCTGCCAGTGCATATGGAGCTGGACAGATACAGGA-CG 116
Query 142 CCCATTCTGATTTTCAAGGTCAATTAGAGGCATTCACGCCTGAGAGGGATCAGCCATATT 201
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CCCATTCTGATTTCCAAGGTCAATTAGAGGCATTCACGCCTGAGAGGGATCAGCCATATT 176
Query 202 CAGATTCACAAGCTGAGGGTCAATGGAGATGGGAAAGAGATGGCCCTAATATGTCAAGGC 261
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 177 CAGATTCACAAGCAGAGGGTCAATGGAGATGGGAAAGAGATGGCCCAAATATGTCAAGGC 236
Query 262 CAATGGCTACTGCTGTTTACAATGAAGGACAACAAGGTGTTGATTCATCGAGGACGTATT 321
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 CAATGGCTACTGCCGTTTACAATGAAGGACAACAAGGTGTTGATTCATCGAGGGCGTATT 296
Query 322 ACCGTGGCCAAATAGATCCAAAATCAGGAATGGAGAAGCAAGGCAGTGAT-CCAAGAGCT 380
||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||| ||
Sbjct 297 ACCGTGGCCAAATGGATCCAAAATCAGGAATGGAGAAGCAAGGCAGCGATACC-AGAACT 355
Query 381 CAACCACAACACCAAGAAAATCCAAAAACCGGTTATGATAATAACCGTGGGGTGCAGACA 440
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 356 CAACCACAACACCAAGAAAATCCAAAGACTGGTTATGATAATAACCGTGGGGTGCAGACA 415
Query 441 TTTGAAGGTCTTGAACAGAAGTTCATGGATGATATAACAAGACTAGCAAAAGATCAAATC 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 TTTGAAGGTCTTGAACAGAAGTTCATGGATGATATAACAAGACTAGCAAAAGATCAGATT 475
Query 501 GAAGCAGAGGATGCAGAGATCGCCAGACATCGAGAGAAAATAAACACTATAAACGCTAGA 560
|||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||
Sbjct 476 GAAGCAGAGGATGCAGAGATTGCTAGACATCGAGAGAAAATAAACACCATAAATACTCGA 535
Query 561 TACGAAGAACAGTTAGCTACACTTAGAGCACGGCACACAGGTAAGAGAGAAGAGATCATG 620
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 536 TACGAAGAACAGTTAGCTACACTCAGAGCACGACACACAGGTAAGAGAGAAGAGATCATG 595
Query 621 AGGAAAGAATCACTAGCTAGGCAGCAACAATTCAAGCAGCAAACCATGGGGATGATGGA- 679
|| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 AGAAAAGAATCACAAGCTAGGCAGCAACAATACAAGCAGCAAACCATGGGGATGATGGAA 655
Query 680 CCAATACCATCCAAACGTGGTTGGTC-AGGCCAATCTAATGCCATCTGGTCATCCCCAAG 738
|| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 656 CCG-TACCATCCAAACGCGGTTGGTCCAG-CCAATCTAATGCCATCTGGTCATCCCCAAG 713
Query 739 GCTACATTGGCAGTGCTCAAGATCCAGCGGCTGTGGCGGATGCACCACCAAGATCATATG 798
| |||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 714 GTTACATTGGCAATGCGCAAGATCCAGCGGCTGTAGCGGATGCACCATCAAGATCATATG 773
Query 799 GCTCAGATCGGTTTGAAGCATACGGAGAGAGAGCTAGGTTTCAGGGAGGAAACAGAGATC 858
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 774 GCTCAGATCGGTTTGAAGCATACGGAGAGAGAGCTAGGTTTCAGGGCGGAAATAGAGATC 833
Query 859 ACGGGTTCGAGCCTAGGGGTCCA-TACCCTGGTGGGAATGTCTATGACACCAGC-TCACG 916
||||||||||||||||||||| | ||||||||||||| ||||| ||||| || |||||
Sbjct 834 ACGGGTTCGAGCCTAGGGGTC-AGTACCCTGGTGGGACCGTCTACGACACT-GCCTCACG 891
Query 917 GTTCTACTGATGTGATATT-ACTTGAACATATTGTGTTTTAGGGGATTCACTCACTCCCA 975
||||||||||||||||||| ||||||||||| |||||| |||||||||||||| | | |
Sbjct 892 GTTCTACTGATGTGATATTTACTTGAACATAATGTGTTCTAGGGGATTCACTC-C-CACT 949
Query 976 CtttttttGTGGCTTTATAGATCAAAA--TCAAGCTTTTCAGACTATCCGGAATTTGAAA 1033
||||||||| | |||||||||| |||| | |||||||||||||||||||||||||| ||
Sbjct 950 CTTTTTTTG-G-CTTTATAGATAAAAAAATTAAGCTTTTCAGACTATCCGGAATTTGCAA 1007
Query 1034 ATGAAATCAGGGTTCCATTTTTT------AATCCTGACGAGAGCATTTTAG 1078
|||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1008 ATGAAATCAGGGTTCCTTTTTTTTTTTTTAATCCTGACGAGAGCATTTTAG 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5