BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22044.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941700 jgi|Araly1|941700|scaffold_602244.1 424 3e-118
Ahg947574 jgi|Araly1|947574|scaffold_703803.1 231 2e-60
Ahg947575 jgi|Araly1|947575|scaffold_703804.1 174 3e-43
> Ahg941700 jgi|Araly1|941700|scaffold_602244.1
Length=472
Score = 424 bits (229), Expect = 3e-118
Identities = 297/331 (90%), Gaps = 0/331 (0%)
Strand=Plus/Plus
Query 6 TAAACAACCTTTTACATAACTAAGCCTTGAGACTAACCAAAACCATCATCCACAACCTCC 65
||| |||||| ||| ||||| | ||||||||| ||||||||||||||||||| |||
Sbjct 122 TAATCAACCTCCTACGGAACTAGGTCTTGAGACTCACCAAAACCATCATCCACAGCCTAT 181
Query 66 GTCTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAGCTCAACAAGACATCAA 125
| |||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 182 GACTCAACAAGACATTGAAACCGGACATCTAACGCCACCACATCCTCAACAAGACATCAA 241
Query 126 AACCGAATATATGATGCATATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGATT 185
||||| |||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 242 AACCGGATATATGATGCAGATCGAGAAAATAGAGTTTAAAGGTATTGAAGAAGAAGGATT 301
Query 186 TGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCG 245
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 302 TGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAGATGGCCATGATATTATCCG 361
Query 246 TATAAATATGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAA 305
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 362 TATAAAGATGTGTAGACATGTTTTTCATCGTCTTTGTATTGATTCTTGGCTGAAACAGAA 421
Query 306 TCAAAGCTGTCCGAATTGCCGATGTTTTTAA 336
||||||||| || ||||| |||||||| |||
Sbjct 422 TCAAAGCTGCCCCAATTGTCGATGTTTCTAA 452
> Ahg947574 jgi|Araly1|947574|scaffold_703803.1
Length=889
Score = 231 bits (125), Expect = 2e-60
Identities = 256/316 (81%), Gaps = 21/316 (7%)
Strand=Plus/Plus
Query 28 AGC-CTTGAGACTAACCAAAA-CCATCATCCACAACCTCCGTCTCAACAAGACACTGAAA 85
||| ||||||||| ||||||| | |||||||| ||||| ||||||| |||||| ||| |
Sbjct 164 AGCTCTTGAGACTCACCAAAATTC-TCATCCACTACCTCAGTCTCAAGAAGACATTGAGA 222
Query 86 CCGGACATCTAACGGC-ACTTGAAG-CTCAACAAGACATCAA-AACCGAATATATGA--T 140
|||||||| ||| || | | || ||||||||||||| || || || || ||||| |
Sbjct 223 CCGGACATGTAA-TGCTGCCT-CAGCCTCAACAAGACAT-AACAATCGGATGTATGACGT 279
Query 141 GCAT--AT-TAA-GA-A--AATAGAGTTTAAAGGTATCGAAGAGGAAGGATTTGATGAGA 193
| || || || || | |||||||||||| ||||| | | ||||| | || |||
Sbjct 280 GGATCAATGAAACGACAGTTTTAGAGTTTAAAGATATCG-A-A-GAAGGGTCCAATAAGA 336
Query 194 TTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCGTATAAATA 253
|||||||| | || ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 337 TTTGTTGTCCGATATGTCTTGAAGAGTTTGAAGATGGCCATGAGATTATTCGTATAAATA 396
Query 254 TGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAATCAAAGCT 313
|||||||||||||||||||||| |||||||||| | |||||| || ||||||| |||||
Sbjct 397 TGTGTAGACATGTTTTTCATCGTTTTTGTATTGATTATTGGCTCAATCAGAATCGAAGCT 456
Query 314 GTCCGAATTGCCGATG 329
|||||||||| |||||
Sbjct 457 GTCCGAATTGTCGATG 472
> Ahg947575 jgi|Araly1|947575|scaffold_703804.1
Length=481
Score = 174 bits (94), Expect = 3e-43
Identities = 174/212 (82%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 68 CTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAG-CTCAACAAG-ACATCAA 125
|||| ||||||| |||||||||||||||| || | ||| || |||||| || | || ||
Sbjct 217 CTCAGCAAGACATTGAAACCGGACATCTAGCGCCGCTT-CAGTCTCAACTAGAATAT-AA 274
Query 126 AACCGAATATATGATGCA--TATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGA 183
||||| |||| | ||| || || |||| |||||||||| ||| ||| | |||||
Sbjct 275 AACCGGTTATA-G-GGCACGGATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGG 332
Query 184 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATC 243
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 333 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAGTTAAAAGATGGCCATGAGATTATC 392
Query 244 CGTATAAATATGTGTAGACATGTTTTTCATCG 275
||||| || | ||||| ||||||||| |||||
Sbjct 393 CGTATCAAGAAGTGTAAACATGTTTTCCATCG 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11904543768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5