BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22044.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value Ahg941700 jgi|Araly1|941700|scaffold_602244.1 424 3e-118 Ahg947574 jgi|Araly1|947574|scaffold_703803.1 231 2e-60 Ahg947575 jgi|Araly1|947575|scaffold_703804.1 174 3e-43 > Ahg941700 jgi|Araly1|941700|scaffold_602244.1 Length=472 Score = 424 bits (229), Expect = 3e-118 Identities = 297/331 (90%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 6 TAAACAACCTTTTACATAACTAAGCCTTGAGACTAACCAAAACCATCATCCACAACCTCC 65 ||| |||||| ||| ||||| | ||||||||| ||||||||||||||||||| ||| Sbjct 122 TAATCAACCTCCTACGGAACTAGGTCTTGAGACTCACCAAAACCATCATCCACAGCCTAT 181 Query 66 GTCTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAGCTCAACAAGACATCAA 125 | |||||||||||| ||||||||||||||||||| ||| | |||||||||||||||| Sbjct 182 GACTCAACAAGACATTGAAACCGGACATCTAACGCCACCACATCCTCAACAAGACATCAA 241 Query 126 AACCGAATATATGATGCATATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGATT 185 ||||| |||||||||||| || |||||||||||||||||||||| ||||| |||||||| Sbjct 242 AACCGGATATATGATGCAGATCGAGAAAATAGAGTTTAAAGGTATTGAAGAAGAAGGATT 301 Query 186 TGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCG 245 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 302 TGATCAGATTTGTTGTTCAATTTGTCTTGAAGAGTTTGAAGATGGCCATGATATTATCCG 361 Query 246 TATAAATATGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAA 305 |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 362 TATAAAGATGTGTAGACATGTTTTTCATCGTCTTTGTATTGATTCTTGGCTGAAACAGAA 421 Query 306 TCAAAGCTGTCCGAATTGCCGATGTTTTTAA 336 ||||||||| || ||||| |||||||| ||| Sbjct 422 TCAAAGCTGCCCCAATTGTCGATGTTTCTAA 452 > Ahg947574 jgi|Araly1|947574|scaffold_703803.1 Length=889 Score = 231 bits (125), Expect = 2e-60 Identities = 256/316 (81%), Gaps = 21/316 (7%) Strand=Plus/Plus Query 28 AGC-CTTGAGACTAACCAAAA-CCATCATCCACAACCTCCGTCTCAACAAGACACTGAAA 85 ||| ||||||||| ||||||| | |||||||| ||||| ||||||| |||||| ||| | Sbjct 164 AGCTCTTGAGACTCACCAAAATTC-TCATCCACTACCTCAGTCTCAAGAAGACATTGAGA 222 Query 86 CCGGACATCTAACGGC-ACTTGAAG-CTCAACAAGACATCAA-AACCGAATATATGA--T 140 |||||||| ||| || | | || ||||||||||||| || || || || ||||| | Sbjct 223 CCGGACATGTAA-TGCTGCCT-CAGCCTCAACAAGACAT-AACAATCGGATGTATGACGT 279 Query 141 GCAT--AT-TAA-GA-A--AATAGAGTTTAAAGGTATCGAAGAGGAAGGATTTGATGAGA 193 | || || || || | |||||||||||| ||||| | | ||||| | || ||| Sbjct 280 GGATCAATGAAACGACAGTTTTAGAGTTTAAAGATATCG-A-A-GAAGGGTCCAATAAGA 336 Query 194 TTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCGTATAAATA 253 |||||||| | || ||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 337 TTTGTTGTCCGATATGTCTTGAAGAGTTTGAAGATGGCCATGAGATTATTCGTATAAATA 396 Query 254 TGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAATCAAAGCT 313 |||||||||||||||||||||| |||||||||| | |||||| || ||||||| ||||| Sbjct 397 TGTGTAGACATGTTTTTCATCGTTTTTGTATTGATTATTGGCTCAATCAGAATCGAAGCT 456 Query 314 GTCCGAATTGCCGATG 329 |||||||||| ||||| Sbjct 457 GTCCGAATTGTCGATG 472 > Ahg947575 jgi|Araly1|947575|scaffold_703804.1 Length=481 Score = 174 bits (94), Expect = 3e-43 Identities = 174/212 (82%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 68 CTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAG-CTCAACAAG-ACATCAA 125 |||| ||||||| |||||||||||||||| || | ||| || |||||| || | || || Sbjct 217 CTCAGCAAGACATTGAAACCGGACATCTAGCGCCGCTT-CAGTCTCAACTAGAATAT-AA 274 Query 126 AACCGAATATATGATGCA--TATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGA 183 ||||| |||| | ||| || || |||| |||||||||| ||| ||| | ||||| Sbjct 275 AACCGGTTATA-G-GGCACGGATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGG 332 Query 184 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATC 243 ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| Sbjct 333 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAGTTAAAAGATGGCCATGAGATTATC 392 Query 244 CGTATAAATATGTGTAGACATGTTTTTCATCG 275 ||||| || | ||||| ||||||||| ||||| Sbjct 393 CGTATCAAGAAGTGTAAACATGTTTTCCATCG 424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11904543768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5