BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22050.2
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489056 jgi|Araly1|489056|fgenesh2_kg.6__2190__AT5G22050.2 1751 0.0
> Ahg489056 jgi|Araly1|489056|fgenesh2_kg.6__2190__AT5G22050.2
Length=1274
Score = 1751 bits (948), Expect = 0.0
Identities = 1104/1175 (94%), Gaps = 27/1175 (2%)
Strand=Plus/Plus
Query 165 CGAGTgagagagagagaCAAAGATATA-GAGCTTCTCGTGAAGCA---A-CAGTGAAGAA 219
|||| |||||||||||| ||||||||| |||| ||||||||||| | |||||||| |
Sbjct 116 CGAGAGAGAGAGAGAGAGAAAGATATACAAGCTCCTCGTGAAGCAGCCAGCAGTGAAG-A 174
Query 220 AAGGAAAGTGAAT---C-GCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 275
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AAGGAAAGTGAATCGCCAGCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 234
Query 276 CTTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAGTTTATCAGACGATTT 335
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 CGTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAATTTATCAGACGATTT 294
Query 336 GGATACAAGGAAATAATCAAAGCAACAGAAGG-TTTCCGTAAGGTTATTTACACCAACTA 394
|| ||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 295 GGTTACAAGGAAATTATCAAAGCAACACAAGGCTTT-CGTAAGGTTATTTACACCAACTA 353
Query 395 TCACGGGTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTTGCTTTGGTCAAAGAACT 454
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 354 TCACGGCTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTAGCTTTGGTCAAAGAACT 413
Query 455 CACTGCTCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTTCAGCTTTTGGGTCGCTT 514
| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 414 TAATGCCCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTGCAGCTATTGGGTCGCTT 473
Query 515 ACGTCACCGTCATCTCCTTACACTTCGTGGGTTTTGCATTGGACGAAAGAGGCTGCTAGT 574
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 474 ACGTCACCGTCATCTCCTTACACTTCGCGGCTTTTGCATTGGACGAAAGAGGCTTCTAGT 533
Query 575 GTTTGACAACATTGAAAATGGAAGTTTAAAAGAACACCTCAATGATCCGCTTAAGACTCC 634
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 534 GTTTGACAACATTGAAAATGGAAGCTTGAAAGAACACCTCAATGATCCTCTTAAGACCCC 593
Query 635 TTTAAATTGGAAGACTCGCATTCAGATAGCTATTGGAGTCGCAGCTGCATTAGAATACTT 694
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 594 TTTGAATTGGAAGACTCGCATTCAGATAGCCATTGGAGTCGCAGCTGCATTAGAATACTT 653
Query 695 GCTAGTCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 754
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCTAATCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 713
Query 755 CATGTTGGATGAAAACTTCACCCCCAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 814
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 CATGTTGGATGAAAACTTCACCCCTAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 773
Query 815 AAACCATCCGAAAGCAACCCATGATTCTTGTTCTGAAGGATCATGTGCGGATGAGGAATG 874
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 AAACCATCCCAAAGCAACCCATGATTCTTGCTCTGAAGGATCATGTGCGGATGAGGAATG 833
Query 875 TGGAAACGTGATATTCCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAATCATC 934
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 TGGAAACGTGATATTTCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAGTCATC 893
Query 935 AGACAGACAAGGCAATGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAACTCAAT 994
|||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 894 AGACAGACAAGGGAAAGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAATTCCAT 953
Query 995 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1013
Query 1055 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1073
Query 1115 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACTTGAATACTAGttttttt 1174
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 1074 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACATAAATACTAGTTTTTGT 1133
Query 1175 tttGTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTTATCATCCTT 1234
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1134 TT-GTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTCATCATCCGT 1192
Query 1235 ATTTAGTCTTT-TGCCTATTTTTACACCATTCTAGATGTAATAACAGCTTATAGTGTAGT 1293
||| ||| ||| |||||||||| ||||||||||||||||||| ||| || ||||
Sbjct 1193 ATTAAGT-TTTCTGCCTATTTTCACACCATTCTAGATGTAATGT-AGC--AT--TGTA-- 1244
Query 1294 AGCATTGTACTTGTCTTGATATAACTTTTGATATT 1328
| |||| |||| |||||||||||||||||||||
Sbjct 1245 --C-TTGT-CTTG-CTTGATATAACTTTTGATATT 1274
Score = 124 bits (67), Expect = 1e-27
Identities = 101/116 (87%), Gaps = 7/116 (6%)
Strand=Plus/Plus
Query 19 aaaaaaGGCGTGAGGTTGATATTACAGCTCA-G-AGCTAAAGCTTTCGTACAACTGAC-- 74
||||||| |||||| ||||| |||||||||| | | ||||||||||||||||||||
Sbjct 1 AAAAAAGACGTGAGATTGATTTTACAGCTCAGGCAAAGAAAGCTTTCGTACAACTGACAG 60
Query 75 ACTC-CT-C-CAAAACTTCCAAGAAAGCATCAGATCCCATTCTCCGCAATCATCTC 127
|| | || | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ACACACTCCTCAAAACTTCCAAGAAAGCATCAGATCCCATTTTCCGCAATCATCTC 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5