BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22050.2 Length=1369 Score E Sequences producing significant alignments: (Bits) Value Ahg489056 jgi|Araly1|489056|fgenesh2_kg.6__2190__AT5G22050.2 1751 0.0 > Ahg489056 jgi|Araly1|489056|fgenesh2_kg.6__2190__AT5G22050.2 Length=1274 Score = 1751 bits (948), Expect = 0.0 Identities = 1104/1175 (94%), Gaps = 27/1175 (2%) Strand=Plus/Plus Query 165 CGAGTgagagagagagaCAAAGATATA-GAGCTTCTCGTGAAGCA---A-CAGTGAAGAA 219 |||| |||||||||||| ||||||||| |||| ||||||||||| | |||||||| | Sbjct 116 CGAGAGAGAGAGAGAGAGAAAGATATACAAGCTCCTCGTGAAGCAGCCAGCAGTGAAG-A 174 Query 220 AAGGAAAGTGAAT---C-GCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 275 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 175 AAGGAAAGTGAATCGCCAGCCATGGATGATCGCCTTCGCTTAAGCCGCAGAATCCGCTTT 234 Query 276 CTTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAGTTTATCAGACGATTT 335 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 235 CGTCTTCTTGCTTGGCTCCGTCGTTCTCGCTCCGGAAGAATAGAATTTATCAGACGATTT 294 Query 336 GGATACAAGGAAATAATCAAAGCAACAGAAGG-TTTCCGTAAGGTTATTTACACCAACTA 394 || ||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||| Sbjct 295 GGTTACAAGGAAATTATCAAAGCAACACAAGGCTTT-CGTAAGGTTATTTACACCAACTA 353 Query 395 TCACGGGTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTTGCTTTGGTCAAAGAACT 454 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 354 TCACGGCTCTGCATACAGAGCTAAATTCAAAGGTGGTGAGGTAGCTTTGGTCAAAGAACT 413 Query 455 CACTGCTCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTTCAGCTTTTGGGTCGCTT 514 | ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 414 TAATGCCCTTGATCTTGGACGAGAAAGGTTTGATGAGGAAGTGCAGCTATTGGGTCGCTT 473 Query 515 ACGTCACCGTCATCTCCTTACACTTCGTGGGTTTTGCATTGGACGAAAGAGGCTGCTAGT 574 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 474 ACGTCACCGTCATCTCCTTACACTTCGCGGCTTTTGCATTGGACGAAAGAGGCTTCTAGT 533 Query 575 GTTTGACAACATTGAAAATGGAAGTTTAAAAGAACACCTCAATGATCCGCTTAAGACTCC 634 |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || Sbjct 534 GTTTGACAACATTGAAAATGGAAGCTTGAAAGAACACCTCAATGATCCTCTTAAGACCCC 593 Query 635 TTTAAATTGGAAGACTCGCATTCAGATAGCTATTGGAGTCGCAGCTGCATTAGAATACTT 694 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 594 TTTGAATTGGAAGACTCGCATTCAGATAGCCATTGGAGTCGCAGCTGCATTAGAATACTT 653 Query 695 GCTAGTCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 754 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GCTAATCTTCAGCAGTAATGATGCACAGATATATGATGTTTCAGTGAACTCATGTAACAT 713 Query 755 CATGTTGGATGAAAACTTCACCCCCAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 814 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 714 CATGTTGGATGAAAACTTCACCCCTAAAATTTCAGATATCCGCGTCAACAGACATCCAAA 773 Query 815 AAACCATCCGAAAGCAACCCATGATTCTTGTTCTGAAGGATCATGTGCGGATGAGGAATG 874 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 774 AAACCATCCCAAAGCAACCCATGATTCTTGCTCTGAAGGATCATGTGCGGATGAGGAATG 833 Query 875 TGGAAACGTGATATTCCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAATCATC 934 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 834 TGGAAACGTGATATTTCAACTAGGAGTGTTGATGTTGGAGCTGATCACAGGACAGTCATC 893 Query 935 AGACAGACAAGGCAATGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAACTCAAT 994 |||||||||||| || |||||||||||||||||||||||||||||||||||||| || || Sbjct 894 AGACAGACAAGGGAAAGACTTGATCGAATGGGTACAAGACTCGTGTATTGCAAATTCCAT 953 Query 995 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TGATAAGATGATTGATCCAGATTTAGGTAACAACTATAGCTCTAGAGAACTCCAGAAAGT 1013 Query 1055 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 CTTAGCCGTGGCTCGACTCTGCATAAAAACGAGGTATGAGCCTCCTTCATTCTCAATTAC 1073 Query 1115 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACTTGAATACTAGttttttt 1174 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | Sbjct 1074 ACATGTATACCGGTATCTACAGAAGAAGATCGATGTTGCAACATAAATACTAGTTTTTGT 1133 Query 1175 tttGTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTTATCATCCTT 1234 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1134 TT-GTGAATTGAATTGGGTTTGATGGTTGAAATTGAGATGACATGTGGTTCATCATCCGT 1192 Query 1235 ATTTAGTCTTT-TGCCTATTTTTACACCATTCTAGATGTAATAACAGCTTATAGTGTAGT 1293 ||| ||| ||| |||||||||| ||||||||||||||||||| ||| || |||| Sbjct 1193 ATTAAGT-TTTCTGCCTATTTTCACACCATTCTAGATGTAATGT-AGC--AT--TGTA-- 1244 Query 1294 AGCATTGTACTTGTCTTGATATAACTTTTGATATT 1328 | |||| |||| ||||||||||||||||||||| Sbjct 1245 --C-TTGT-CTTG-CTTGATATAACTTTTGATATT 1274 Score = 124 bits (67), Expect = 1e-27 Identities = 101/116 (87%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 19 aaaaaaGGCGTGAGGTTGATATTACAGCTCA-G-AGCTAAAGCTTTCGTACAACTGAC-- 74 ||||||| |||||| ||||| |||||||||| | | |||||||||||||||||||| Sbjct 1 AAAAAAGACGTGAGATTGATTTTACAGCTCAGGCAAAGAAAGCTTTCGTACAACTGACAG 60 Query 75 ACTC-CT-C-CAAAACTTCCAAGAAAGCATCAGATCCCATTCTCCGCAATCATCTC 127 || | || | ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 ACACACTCCTCAAAACTTCCAAGAAAGCATCAGATCCCATTTTCCGCAATCATCTC 116 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51237200448 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5