BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22060.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1 2355 0.0
Ahg937016 jgi|Araly1|937016|scaffold_501207.1 1260 0.0
> Ahg489058 jgi|Araly1|489058|fgenesh2_kg.6__2192__AT5G22060.1
Length=1524
Score = 2355 bits (1275), Expect = 0.0
Identities = 1412/1478 (96%), Gaps = 9/1478 (1%)
Strand=Plus/Plus
Query 90 TTAttttttttAGGGTTTTCGTAAGAACAGAGCAAAAAACATGTTTGGAAGAGGACCTTC 149
||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||
Sbjct 54 TTATTTTTTTTAGGGTTTTCGTAAG-A-AGAG-AGAAAACATGTTTGGAAGAGGACCTTC 110
Query 150 AAGGAAGAGCGATAACACAAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCAGCACC 209
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 111 AAGGAAGAGCGATAACACCAAGTTCTACGAGATCCTTGGTGTTCCTAAGACCGCATCACC 170
Query 210 AGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GGAAGATCTCAAGAAAGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGG 230
Query 270 TGATCCCGAAAAGTTTAAAGAGTTAGCACAGGCTTATGAAGTT-TTAAGTGATCCTGAGA 328
||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 231 AGATCCCGAAAAGTTTAAAGAGCTAGCTCAGGCTTATGAAGTTCTT-AGTGATCCTGAGA 289
Query 329 AGCGTGAGATCTATGATCAATATGGGGAAGATGCACTCAAGGAAGGAATGGGTGGTGGAG 388
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 290 AGCGTGAGATCTATGACCAATATGGGGAGGATGCACTCAAGGAGGGAATGGGTGGTGGAA 349
Query 389 GTGGTGGACACGATCCATTTGATATCTTCTCTTCCTTCTTTGGTAGTGGTGGACACCCAT 448
| ||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 350 GCGGTGGGCACGATCCGTTTGATATCTTCTCTTCCTTCTTTGGTGGTGGTGGAAACCCAT 409
Query 449 TCGGAAGTCATAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCTTGA 508
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 410 TCGGAGGTCATAGCCGGAGAAGAAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCCTGA 469
Query 509 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGGTTTCCTTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGG 529
Query 569 CTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTTTGTGCTCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTG 589
Query 629 GCTGTCAAGGTTCGGGAATGAAGATCTCGATCAGGCAGTTTGGACCTGGAATGATGCAGC 688
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 590 GCTGTCAAGGTTCGGGAATGAAGGTCTCGATCAGGCAGGTTGGACCTGGAATGATTCAGC 649
Query 689 AGGTGCAGCATGCTTGTAATGATTGCAAAGGCACAGGAGAGACCATCAATGATCGGGACA 748
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 650 AGATGCAGCATGCTTGTAATGATTGCAAGGGCACAGGAGAGACCATCAATGATCGGGACA 709
Query 749 GGTGTCCACAATGCAAAGGAGAGAAGGTTGTCTCTGAGAAGAAGGTGCTTGAAGTAAATG 808
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 710 GGTGTCCACAATGCAAAGCAGAGAAGGTTGTTTCCGAGAAGAAGGTGCTTGAAGTAAATG 769
Query 809 TGGAGAAGGGAATGCAACACAATCAGAAGATCACATTCAGTGGACAAGCCGATGAAGCGC 868
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 770 TGGAGAAGGGAATGCAACACAATCAGAAGATCACGTTCAATGGACAAGCAGATGAAGCGC 829
Query 869 CTGATACTGTCACCGGAGATATAGTGTTTGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 928
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 830 CTGATACTGTTACCGGAGATATAGTGTTCGTCATTCAGCAGAAGGAGCACCCAAAGTTCA 889
Query 929 AAAGAAAGGGTGAGGATCTCTTTGTGGAGCACACCATCTCTCTAACCGAGGCCTTGTGTG 988
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 890 AAAGAAAGGGGGATGATCTCTTTGTGGAGCACACCCTCTCTCTAACCGAGGCCTTGTGTG 949
Query 989 GCTTCCAGTTTGTCTTGACCCATTTGGACAAAAGACAGCTTCTCATCAAATCCAAGCCCG 1048
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 950 GCTTCCAGTTTGTTTTGACCCATTTGGACAAAAGGCAGCTTCTCATCAAATCCAATCCCG 1009
Query 1049 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GAGAGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACC 1069
Query 1109 AAAGGCCGTTCATGAAGGGTAAGCTATACATTCACTTCACGGTTGAATTCCCGGAATCGC 1168
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 1070 AAAGGCCGTTCATGAAGGGTAAGCTATACATCCACTTCACTGTTGAGTTCCCGGATTCGC 1129
Query 1169 TGAGCCCGGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCAACCAAGGCAGCTA 1228
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1130 TGAGCCCAGATCAGACAAAGGCCATTGAAGCAGTTTTGCCAAAGCCGACCAAGGCAGCTA 1189
Query 1229 TAAGCGATATGGAAATAGACGACTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1288
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1190 TAAGTGATATGGAAATAGACGAGTGCGAAGAGACGACTCTGCATGATGTGAACATTGAGG 1249
Query 1289 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGAAGATC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1250 ATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGATGACGATGAGGATGAAC 1309
Query 1349 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCAACATGCGCATCTTAGT 1408
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1310 ACCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGTGATCCACATGCGCATCTTAGT 1369
Query 1409 GATCTCCAATATTTGCTTCTGTCTTTTCTCCTTTTCATTGTATTATTTTTGGGTCTTTTT 1468
|||| |||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1370 GATCCCCAACATTTGCTTCT-TCTTTTCTCTTTTTCGTTGTATTATTTTTGGGTCTTTTT 1428
Query 1469 ATAGACTTTGCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAA-TCCTTGTTACACCA 1527
||||||||||||||||||||||||||||||||||||||||||||| ||||| | | || |
Sbjct 1429 ATAGACTTTGCCAATTCAGTGGGAAGAACCTCGTCCTAATTCAAAATCCTTATCA-AC-A 1486
Query 1528 ttttttttGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1565
||||||||||||||||||||||||||||||||||||||
Sbjct 1487 TTTTTTTTGGTTTGAGAAATAAACTTGTAGTTCTTGAG 1524
> Ahg937016 jgi|Araly1|937016|scaffold_501207.1
Length=1386
Score = 1260 bits (682), Expect = 0.0
Identities = 1108/1308 (85%), Gaps = 51/1308 (4%)
Strand=Plus/Plus
Query 107 TTCGTAAGAACAGAGCAAAAAACATGTTTGGAAGAGGACCTTC-AAGGAAGAGCGATAAC 165
||||| ||||| | || |||| ||||| || |||||||| || || ||||||||| |||
Sbjct 1 TTCGTTAGAAC-G-GC-GAAAAGATGTTCGGTAGAGGACCCTCGAA-GAAGAGCGACAAC 56
Query 166 ACAAAGTTCTACGAGATCCTT-GGTGTTCCTAAGACCGCAGCACCAGAAGATCTCAAGAA 224
|| |||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 57 ACTAAGTTCTACGAGAT-CTTAGGTGTTCCTAAGAGCGCATCACCAGAAGATCTCAAGAA 115
Query 225 AGCTTATAAGAAAGCCGCTATCAAAAACCATCCTGATAAGGGTGGTGATCCCGAAAAGTT 284
|||||| || ||||| |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 116 AGCTTACAAAAAAGCTGCTATCAAGAACCATCCTGATAAGGGTGGAGATCCCGAGAAGTT 175
Query 285 TAAAGAGTTAGCACAGGCTTATGAAGTT-TTAAGTGATCCTGAGAAGCGTGAGATCTATG 343
||||||||||| || |||||||||||| || ||||| || |||||||||||||| ||||
Sbjct 176 CAAAGAGTTAGCTCAAGCTTATGAAGTTCTT-AGTGACCCGGAGAAGCGTGAGATTTATG 234
Query 344 ATCAATATGGGGAAGATGCACTCAAGGAAGGAATGGGTGGTGGAGGTGGTGGACACGATC 403
| || ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 235 ACCAGTATGGAGAGGATGCACTCAAGGAAGGAATGGGTGGTGGAGGAGGTGGACATGATC 294
Query 404 CATTTGATATCTTCTCTTCCTTCTTTGGTAGTGGTGGACACCCATTCGGA-A--GT--CA 458
|||||||||| ||||| ||||||||| | || | | | ||| || ||| | || |
Sbjct 295 CATTTGATATTTTCTCATCCTTCTTT-G--GTCGAAG-C-CCC-TTTGGAGATGGTGGTA 348
Query 459 -TAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCCTTGAAGGTTTC-C 516
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 349 GCAGCCGGGGAAGGAGGCAGAGGCGTGGTGAAGATGTTGTTCATCCTTTGAAGGTTTCTC 408
Query 517 TTAGAGGATGTTTATCTCGGAACAACAAAGAAGCTCTCACTTTCTAGGAAGGCTTTGTGC 576
|| |||||||| || || ||||||| ||||||||||||||||||||||| ||| | |||
Sbjct 409 TT-GAGGATGTGTACCTTGGAACAATGAAGAAGCTCTCACTTTCTAGGAATGCTCTCTGC 467
Query 577 TCAAAGTGTAACGGCAAGGGTTCAAAGTCTGGAGCTTCAATGAAATGTGGTGGCTGTCAA 636
|||||||||||||| ||||| ||||| |||||||| || |||||||||||||| ||||||
Sbjct 468 TCAAAGTGTAACGGAAAGGGGTCAAAATCTGGAGCCTCCATGAAATGTGGTGGATGTCAA 527
Query 637 GGTTCGGGAATGAAGATCTCGATCAGGCAGTTTGGACCTGGAATGATGCAGCAGGTGCAG 696
||||| || |||||| | || || |||||| | |||||||||||||| |||||| |||||
Sbjct 528 GGTTCTGGTATGAAGGTGTCAATTAGGCAGCTCGGACCTGGAATGATCCAGCAGATGCAG 587
Query 697 CATGCTTGTAATGATTGCAAAGGCACAGGAGAGACCATCAATGATCGGGACAGGTGTCCA 756
||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 588 CATGCATGTAATGAATGCAAAGGAACAGGTGAGACCATCAATGATCGCGACAGATGTCCG 647
Query 757 CAATGCAAAGGAGAGAAGGTTG-TCTC-TGAGAAGAAGGTGCTTGAAGTAAATGTGGAGA 814
|||||||||||||| ||||| | | || ||||||||||||||||||||| ||||||||||
Sbjct 648 CAATGCAAAGGAGACAAGGT-GAT-TCCTGAGAAGAAGGTGCTTGAAGTGAATGTGGAGA 705
Query 815 AGGGAATGCAACACAATCAGAAGATCACATTC-AGTGGACAAGCCGATGAAGCGCCTGAT 873
||||||||||||||| |||||||||||||||| | |||||||| ||||||||||||||
Sbjct 706 AGGGAATGCAACACAGTCAGAAGATCACATTCGAA-GGACAAGCGGATGAAGCGCCTGAC 764
Query 874 ACTGTCACCGGAGATATAGTGTTTGTCATTCAGCAGAAGGAGCACCCAAAGTTCAAAAGA 933
|||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| |||
Sbjct 765 ACTGTCACTGGAGATATAGTGTTTGTCCTTCAGCAGAAAGAGCATCCGAAGTTCAAGAGA 824
Query 934 AAGGGTGAGGATCTCTTTGTGGAGCACAC-CATCTCTCTAACCGAGGCCTTGTGTGGCTT 992
|||||||| || ||||||||||||||||| | | |||||||| || || || ||||||||
Sbjct 825 AAGGGTGAAGACCTCTTTGTGGAGCACACACTT-TCTCTAACAGAAGCTTTATGTGGCTT 883
Query 993 CCAGTTTGT-CTTGACCCATTTGGACAAAAGACAGCTTCTCATCAAATCCAAGCCCGGAG 1051
|| ||||| || ||| || ||||| ||| | |||||||| ||||| || || || |
Sbjct 884 TCAATTTGTTCT-GACTCACTTGGATGGCAGAAATCTTCTCATTAAATCTAATCCTGGGG 942
Query 1052 AGGTCGTCAAACCTGATTCATACAAGGCGATAAGTGATGAGGGAATGCCAATATACCAAA 1111
||||||| |||||||||||||||||||| || || ||||| |||||||| |||||||| |
Sbjct 943 AGGTCGTGAAACCTGATTCATACAAGGCAATTAGCGATGAAGGAATGCCGATATACCAGA 1002
Query 1112 GGCCGTTCATGAAGGGTAAGCTATACATTCACTTCACGGTTGAATTCCCGGAATCGCTGA 1171
|||| ||||||||||||||||| ||||| |||||||| || || ||||| || |||||||
Sbjct 1003 GGCCATTCATGAAGGGTAAGCTCTACATCCACTTCACAGTGGAGTTCCCAGACTCGCTGA 1062
Query 1172 GCCCGGATCAGAC-AAAGGCCATTG-AAGCAGTTTTGCC-AAAGCC--AACCAAGGCAGC 1226
|||| ||||| || |||| | | || |||| || |||| ||| || ||| || ||
Sbjct 1063 GCCCTGATCAAACCAAAG-C-ACTGGAAGCTGTGCTGCCTAAACCCTCAAC-AACTCAA- 1118
Query 1227 TATAAGCGATATGGAAATAGACGACTGCGAAGAGACGACTCTGCATGATGTGAACATTGA 1286
| | || || ||||| ||||| || ||||| ||||| || || || ||||| ||||||||
Sbjct 1119 T-TGAGTGACATGGAGATAGATGAATGCGAGGAGACCACGCTCCACGATGTCAACATTGA 1177
Query 1287 GGATGAGATGAAAAGGAAGGCGCAAGCTCAAAGAGAGGCTTATGA---TGACGATGAGGA 1343
|||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 1178 GGATGAAATGAAGAGGAAGGCACAAGCTCAAAGAGAGGCTTATGACGATGACGATGAAGA 1237
Query 1344 AGAT--C-A-CCCAGGCGGTGCTCAGCGTGTGCAATGTGCCCAGCAGT 1387
||| | | ||| || |||||||| | ||||||||||| |||||||
Sbjct 1238 TGATGACCATCCC-GGTGGTGCTCAAAGGGTGCAATGTGCTCAGCAGT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5