BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22070.1
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489059 jgi|Araly1|489059|fgenesh2_kg.6__2193__AT5G22070.1 2699 0.0
> Ahg489059 jgi|Araly1|489059|fgenesh2_kg.6__2193__AT5G22070.1
Length=1867
Score = 2699 bits (1461), Expect = 0.0
Identities = 1764/1901 (93%), Gaps = 57/1901 (3%)
Strand=Plus/Plus
Query 1 ACAATCTGAGATCTGAAAGATA-TTTCTAAATTCTCATTAAATTCCCCCATAAATTTTCA 59
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct 1 ACAATCTGAGATCTGAAAGATATTTTCTAAAATCTCATTAAATT-CCCCATAAAGTTTCA 59
Query 60 ATCTTTGCTGATTTTCCCCCAAA-TTTCTGGAGATAGATAACCTTCGTTTTTCAG-GAGT 117
||||||||||||||||||||||| ||||| | | ||||||||||||||||| || | ||
Sbjct 60 ATCTTTGCTGATTTTCCCCCAAATTTTCT-G-G--AGATAACCTTCGTTTTT-AGAGCGT 114
Query 118 TTCTTTCTATATTTC-TTCATCGATTTCGTTC-AGTCTTTGAGAGAGGTTCGTCGACGTA 175
||||||||| ||||| |||||||||||||| | ||| ||||||||||| | |||||| |
Sbjct 115 TTCTTTCTAAATTTCTTTCATCGATTTCGTCCAAGTTTTTGAGAGAGG-T--TCGACGGA 171
Query 176 TTATCGTCGGAAAAAAGCTATGAGAATCTATTTCTCATAGCTCCAGTAATGTGAAATCGA 235
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 172 TTATCGTCGG--AAAAGCTATGAGAATCTGTTTCTCATAGCTCCAGTAATGTGAAATCCA 229
Query 236 GACAACGCTTTATCTTCAGAATCTGCTAATCCATGGGAGATTCAATCACATTCCGGTAGA 295
|| ||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 230 GAAAACGCTTTATCTTCAGAATCTGCCGATTCATGGGAGATTCACGCACATTCCGGTAGA 289
Query 296 tttttttccagtttctggggaagtcaaaaatttctagggtttccgatttttgttttcctt 355
|||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 290 ---TTTTCCAGTTTCTGGGGAAGTC--AAATTTCTAGGGTTTCCGA-TTTTGTTTT--GG 341
Query 356 ttccAAATGTTCTCGAATCAGTTTGttctcttcttctctcttctcCTATGTCTCCCATTT 415
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 342 TTCCAAATGTTCTCGAATCAGTTTGTTCTCTTCTTCTCTTTTCTTCTATGTCTCCCATTC 401
Query 416 GTTTTCTTCTTTGTAGCGCCACATGTGTTT-CCTTCTCCTCCTGGTGAATCTTTAATCCC 474
|| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 402 GTCTTCTTCTTTGTAGCGCCACATGT-TTTCCCTTCTCCTCCTGGTGAATCTTTAATTCC 460
Query 475 AATCTCCGATGAGATTGATGACCGGAGTTTATTCATCGCCGCTGCTGGATCAACCTCTCT 534
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 461 AATCTCCGATGAGATTGATGACCGGAGTTTATTCATCGCCGCTGCTGGGTCAACCTCTCT 520
Query 535 TTCTCATCTCTCATCTGGAAACCCTAACCCTAAGCTCAAGATTGCTTTTCTATTCCTCAC 594
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 521 TTCCCATCTTTCATCTGGAAACCCTAACCCTAAGCTCAAGATTGCTTTTTTATTCCTCAC 580
Query 595 CAACTCCGATCTCCATTTCGCGCCAATCTGGGATCGATTCTTCTCTGGTCATTCGAAATC 654
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 581 CAACTCCGATCTCCATTTCGCGCCAATCTGGGATCGGTTCTTCTCTGGTCATTCTAAATC 640
Query 655 TCTCTACAACGTCTATGTCCACGCAGATCCTTTTGTCAATGTCACAAGACCTGGGAATGG 714
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GCTTTACAACGTCTATGTCCACGCAGATCCTTTTGTCAATGTCACAAGACCTGGGAATGG 700
Query 715 CTCTGTGTTTGAGAATGCCTTCATTGCAAACGCGAAACGCACCGCAAGAGCTTCTCCGAC 774
||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||
Sbjct 701 CTCTGTGTTTGAGAATGCCTTCATTGCAAACGCTAAACGCACTGCACGAGCCTCTCCGAC 760
Query 775 TCTTATCTCCGCCACGCGGCGCCTCCTCGCTACCGCTTTCCTTGATGACCCTGCGAACAC 834
||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 761 TCTGATCTCCGCCACGCGGCGCCTCCTCGCCACCGCCTTCCTTGACGACCCTGCGAACAC 820
Query 835 TTACTTCGCTGTGCTCTCTCAGTATTGTATTCCTCTCCACTCGTTCAACTATGTTTATAG 894
||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 821 TTACTTCGCTGTGCTGTCTCAGTATTGCATTCCTCTCCACTCCTTTAACTATGTTTATAG 880
Query 895 CTCTCTCTTTGAATCTTCAATTTTTGATAAATCTGATCCGGATCCGAA-TCCGAATCCGA 953
|||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct 881 CTCTCTCTTTGAATCTTCCACTTTTGATAAATCTGATCCGGATCC-AACTCCGAATCCGA 939
Query 954 GAGGTATTAGAATCTTGTATCGGAGTTTTATGGAACTGATATCTGATGAGCCTAGGCTTT 1013
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 940 GAGGTATTCGAATCTTGTATCGGAGTTTTATGGAACTGATATCCGATGAGCCGAGGCTTT 999
Query 1014 GGAAACGGTACACTGCTAGAGGAAGGTATGCTATGATGCCTGAGGTTCCGTTTGAGAAAT 1073
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GGAAACGGTACACTGCTAGGGGAAGGTATGCTATGATGCCTGAGGTTCCGTTTGAGAAAT 1059
Query 1074 TCAGAGTTGGTTCGCAGTTCTTTGTTATGACTAGAAGACATGCTTTGTTAACAATCAAAG 1133
||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1060 TCAGAGTTGGTTCACAGTTCTTTGTTATGACCAGAAGACATGCTTTGCTAACTATCAAAG 1119
Query 1134 ATCGGA-TCTTGTGGCGTAAATTCAAGCTCCCGTGTTATCGTTCTGATGAGTGTTACCCG 1192
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1120 ATC-GATTCTTGTGGCGTAAATTCAAGCTCCCGTGTTATCGTCCTGATGAGTGTTACCCG 1178
Query 1193 GAGGAGCATTATTTCCCGACGCTGTTGAACATGAAGGATCCGGATGGTTGCACTGGGTAT 1252
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1179 GAGGAGCATTATTTCCCGACGCTGTTGAACATGAAGGATCCAGATGGGTGCACTGGTTAT 1238
Query 1253 ACGTTGACGCGAGTTAACTGGACTGGGACTGTGAAAGGACATCCTTATACTTACAAACCA 1312
|| |||| || || ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1239 ACCCTGACTCGGGTCAACTGGACTGGCACTGTGAAAGGACATCCTTATACCTACAAACCA 1298
Query 1313 AAGGAAGTTGTGCCAGAGTTGATCCAGAGACTCCGGCGATCGAATCACTCTAGCTCCTAC 1372
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1299 AAGGAAGTCGTGCCCGAGTTGATTCAGAGACTCCGGCGATCGAATCACTCTAGCTCGTAC 1358
Query 1373 TTTTTCGCCCGCAAATTTACTCCGGATTGCTTGAAGCCGCTTTTGGCCATTGCAGATTCT 1432
||||||||||| ||||||||||| | |||| |||||||||| ||||||||||||||||||
Sbjct 1359 TTTTTCGCCCGTAAATTTACTCCAGCTTGCCTGAAGCCGCTGTTGGCCATTGCAGATTCT 1418
Query 1433 GTGATTTTCAGAGATTAAGTTATGCAGGGTGAGAAAACAAAAGTTTTGGTGACCGGAGAG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GTGATTTTCAGAGATTAAGTTATGCAGGGTGAGAAAACAAAAGTTTTGGTGACCGGAGAG 1478
Query 1493 GTTTTATGTATGGGTTGAAGAACAAATGCCACTTTCAGAATTAAGAAGAGGCAAAGCGAA 1552
||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 1479 GTTTTATGTATGGTTTGAAGAACAAATGCCACTTTCAGGATTAAGAAGGGGCAAAGCCAA 1538
Query 1553 ACGATGTTAGGAGGCTTTGAGGCTTGAAATAAATAAACCAGCTTTAGTGGTACTCGGAGC 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 ACGATGTTAGGAGGCTTTGAGGCTTGAAATAAATAAACCAGCTTTAGTGGTACTCGGAGC 1598
Query 1613 TCAGGCTTGTTAGCTGTTGTGACATATATAT----CACACGACACGAGAACACAGATCAA 1668
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1599 TCAGGCTTGTTAGCTGTTGTGACATATATATTTATCACACGACACGAGAACACAGATTAA 1658
Query 1669 GAGACAGAGAAA-CCGAAC-TTGTAAtttttttttttgtttttctttttgttcttctttt 1726
|||||||||||| || | | ||||||| |||||| |||||||| |||||||
Sbjct 1659 GAGACAGAGAAATCC-A-CGTTGTAAT----------GTTTTT-TTTTTGTTTTTCTTTT 1705
Query 1727 tgttctttgGAGCTGGTGCTGTTACATAGCAGAGCTCTTTTTACCTCAAAGGCTTGGGGT 1786
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1706 TGTTCTTTGGAGCTGGTGCTGTTACATAGCAGAGCTCTTTTCACCTCAAAAGCTTGGGGT 1765
Query 1787 CTGTAGCATTATAATTGTGTCAAGGAAATCTATGAAGAGAATATGTTAT--CT----CT- 1839
||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1766 CTGTAGCATTATAATTGTGTCAAGGAAATCTATGAAGAGAATATGTTATTTCTTGATCTC 1825
Query 1840 T-GTGGTGAACACCACATTGAATATATAAAAGATCAAAGTT 1879
| |||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TTGTGGTGAACACCACATTGAATATATAAAAGATCAAAGTT 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5