BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22080.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489060 jgi|Araly1|489060|fgenesh2_kg.6__2194__AT5G22080.1 1648 0.0
> Ahg489060 jgi|Araly1|489060|fgenesh2_kg.6__2194__AT5G22080.1
Length=1039
Score = 1648 bits (892), Expect = 0.0
Identities = 997/1046 (95%), Gaps = 14/1046 (1%)
Strand=Plus/Plus
Query 2 TCTCCGTTCTCTACTCTTGTCGTCGTTGgaagaa-gaggaagagagaggacaagagaatc 60
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TCTTCGTTCTCTACTCTTGTCGTCGTTGGAAGAAGGAGGAAGAGAGAGGACAAGAGAATC 60
Query 61 ataagaagaagaCATAGTCATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATC 120
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAAGAAG-ACA-AGAGTCATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATC 118
Query 121 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGGCAGGATTCTCTCATG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 119 CTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGTCAGGATTCTCTCATG 178
Query 181 CTTCAAGCTGAATCCGTTTGAGCATCTTAACCTCTCTTTCGATTCTTCCACGGATGATGT 240
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 CTTCAAGCTGAACCCGTTTGAGCATCTTAACCTCTCTTTTGATTCTTCCACGGATGATGT 238
Query 241 TAAAAGGCAGTACAGAAAGATTTCTTTGATGGTTCATCCTGATAAATGCAAACATCCACA 300
|||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 239 TAAAAGGCAGTATAGAAAGATTTCTTTGATGGTGCATCCTGACAAATGCAAGCATCCACA 298
Query 301 AGCACAGGAGGCTTTCGGAGCATTGGCAAAAGCGCAACAACTGCTGCTAAACGACCAAGA 360
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 299 AGCACAGGAGGCTTTTGGAGCATTGGCAAAAGCCCAACAACTACTGCTAAACGACCAAGA 358
Query 361 AAGAGATTATATTCTTACCCAAGTCCATGCTGCAAAAGAAGAGCTTAAGATGAAGAGAAA 420
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 AAGAGATTATATTCTCACCCAAGTCCATGCGGCAAAAGAAGAGCTTAAGATGAAGAGAAA 418
Query 421 GAAACAGTTAAAGAAAGACACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAACAGTTAAAGAAAGATACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCA 478
Query 481 TGAGCACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAACACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGA 538
Query 541 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGA 598
Query 601 GGGGAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCA 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGGAAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCA 658
Query 661 TGAAGAACAGTGGGAAGGAACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAGAACAGTGGGAAGGGACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAA 718
Query 721 AGCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGACCTCCAAAATTGAAGACAGAGGATCC 780
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 ATCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGTCCTCCAAAATTGAAGACAGAGGATCC 778
Query 781 GAACAAATCATACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTGCCTTCATTTGTTTT 840
||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 779 GAACAAATCGTACGTCCAAAGGCCGGTCAAGAAAGGCTGATCTCTACCTTCTTTTGTTTC 838
Query 841 TGCTGTTGTTGACATTGATAGATATTGGTCTTCTCGAGGATAATCTCAGACTCTCTCTTC 900
||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||||||
Sbjct 839 TGCTGTTGTTGACATTGATAGAT-T-GGTCTTCTAGAGGATACTCTCAGACTCTCTCTTC 896
Query 901 TTGTGTCTGTGTTTCTTCCCTTTGTACATCACCAACTTCATTCGTCTTTCCAAATACATC 960
|||||||||| | |||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 897 TTGTGTCTGT-T--CTTCTCTTTGTACATCATCAACTTCATTTGTCTTTCCAAATACATC 953
Query 961 AGAGACAGGGAAGCGATATCTCACTTCTCACAT--T-ATGACCTTAACTT---ATTGCGT 1014
||| ||||||||| |||||||||||||||||| | ||||||||||||| |||||||
Sbjct 954 AGAAACAGGGAAGAGATATCTCACTTCTCACACGCTCATGACCTTAACTTTGTATTGCGT 1013
Query 1015 CTCAGTCCAGATGATGTCATTAGCCT 1040
|| ||||||||||||||| |||||||
Sbjct 1014 CTTAGTCCAGATGATGTCTTTAGCCT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5