BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22090.1
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351234 jgi|Araly1|351234|fgenesh1_pg.C_scaffold_6001827 2056 0.0
> Ahg351234 jgi|Araly1|351234|fgenesh1_pg.C_scaffold_6001827
Length=1389
Score = 2056 bits (1113), Expect = 0.0
Identities = 1310/1402 (93%), Gaps = 26/1402 (2%)
Strand=Plus/Plus
Query 164 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 60
Query 224 ATAGTGAGTATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTTAGGCGA 283
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATAGTGACAATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTGAGGCGT 120
Query 284 ACTTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCCCAAAATGGGTTTTCTCCTATG 343
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ACCTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCGCAAAATGGGTTTTCTCCTATG 180
Query 344 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTCCTGACGAAGAAGAAGCAGAGGAAGAATCA 403
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTGCTGAC------GAAGCAGAGGAAGAATCA 234
Query 404 AGATCCGGAGTCGATATCTGGGCACAGATTCAACAAGACAAGAACGATAAGAAGAAAGAG 463
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 235 AGATCCGGTGTCGATATTTGGGCACAGATTCAACAAGACAAGAACGACAAGAAGAAAGAG 294
Query 464 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGCTCGATTTTGTCTGAGAAGAAGAAG 523
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 295 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGTTCGATTTTGTCGGAGAAGAAGAAG 354
Query 524 ACTGAATCGAGCAAGGACACTGTTCCTCCACCGTATGTTCATCCAT-TGATGAAACGTGC 582
|||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||
Sbjct 355 ACTGAATCGAGCAACGACGCGGTTCCTCCACCGTATGTTCATCC-TCTGATGAAACGTGC 413
Query 583 GAGTTCCTTGAGTGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 642
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGTTCCTTGAGCGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 473
Query 643 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGCTGAGATCGAGATTCA 702
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 474 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGTTGAAATCGAGATTCA 533
Query 703 TGATGAGACCAATCTCGTTGTTAACGTGACGGAGACGAAGGTTGAAGAAATAACAGAGAC 762
|| ||||||||||||||| | |||||||||||||||||||| || ||| |||||||| |
Sbjct 534 GGAGGAGACCAATCTCGTTATCAACGTGACGGAGACGAAGGTAGAGGAAGTAACAGAGGC 593
Query 763 TGAGATTGTGGTTGAGCAAGAATCATCAATCATTGTTCCGAATCACATAATCGAGCTGCC 822
|||| ||| | |||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 594 TGAGGTTGAGATTGAGCAAGAATCA--A-TCACGGTTCCGAATCACATAATCGAGCTGCC 650
Query 823 TCCAGGATCGTTTCCTCCTCCGATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 882
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCGAGGATCGTTTCCTCCTCCAATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 710
Query 883 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTTGAAGCTGTCTCTATGCCGTCGCA 942
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 711 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTCGAGGCTGTCTCTATGCCGTCGCA 770
Query 943 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTCCTTACTTTTGCTGAAATCAG 1002
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 771 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTTCTCACCTTTGCTGAAATCAG 830
Query 1003 CAACGAACCCA--A-CTA---CGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 1056
| ||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 831 CGACGAACCCATTAACGAAATCGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 890
Query 1057 CGACgaggaggaagaagaagaagaggaggaggaggatgaagaagaagaggCACCAGACGA 1116
|||||||||||||||||||||||| || || || | |||||||||||||||||||||||
Sbjct 891 CGACGAGGAGGAAGAAGAAGAAGAAGACGACGA--A-GAAGAAGAAGAGGCACCAGACGA 947
Query 1117 GTTTGCCTACAAGCCCAATGGGCTTCTCTATAAGATGGCACAAAAGCCCATTCCTATAAC 1176
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 948 GTTTGCCTACAAGCCCAATGGGCTTCTGTATAAGTTGGCACAAAAGCCCATTCCTATAAC 1007
Query 1177 TGTTCATAGGTTGGCCCATAAACCAATTGGTGTACCAAAGAGAAACTCTCGATGGCCTAT 1236
|||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| |
Sbjct 1008 TGTTCATAGGTTGGCCTATAAACCCATTGGTGTACCCAAGAGAAACTCTAAATGGCCCGT 1067
Query 1237 GGCTGATGAATTCGACACCAAATCCGATCTGTCGACTCCGGTGGTTCACTCTCTGCCGCC 1296
||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 1068 AACTGATGAATTCGACACCAAATCCGATCTGTCAACTCCGGTAGTCCACTCTCTACCGCC 1127
Query 1297 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCACCGTCCACGGTGGACGACAC 1356
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1128 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCGCCATCCACGGTGGACGACAC 1187
Query 1357 CGTTGGGGCCGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1416
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGTAGGAGCTGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1247
Query 1417 ATTTGGCCCAAA--CA--C--AAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1470
|||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TTTTGGCCCAATTTCAAGCCCAAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1307
Query 1471 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1367
Query 1531 GCCTTTCTGCATTGCCACATAA 1552
|||||||||||||||||| |||
Sbjct 1368 GCCTTTCTGCATTGCCACTTAA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74123616770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5