BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22090.1 Length=1972 Score E Sequences producing significant alignments: (Bits) Value Ahg351234 jgi|Araly1|351234|fgenesh1_pg.C_scaffold_6001827 2056 0.0 > Ahg351234 jgi|Araly1|351234|fgenesh1_pg.C_scaffold_6001827 Length=1389 Score = 2056 bits (1113), Expect = 0.0 Identities = 1310/1402 (93%), Gaps = 26/1402 (2%) Strand=Plus/Plus Query 164 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTGTGGCTTAAGCAAGAGCCTTGGCTTGTCTTCCTCCTTGAAGAAGCAACAAGGC 60 Query 224 ATAGTGAGTATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTTAGGCGA 283 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 ATAGTGACAATCCTTGGTGGCATTTCGTCGAACACTTCATCTGCACCTTCACTGAGGCGT 120 Query 284 ACTTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCCCAAAATGGGTTTTCTCCTATG 343 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 ACCTTCTCCGCCGATTTGTCCTCCAAGACTTGGGTTTCGCAAAATGGGTTTTCTCCTATG 180 Query 344 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTCCTGACGAAGAAGAAGCAGAGGAAGAATCA 403 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 181 AAGAGAATCTCTTCCTCTGAGAAGCTTCGTGCTGAC------GAAGCAGAGGAAGAATCA 234 Query 404 AGATCCGGAGTCGATATCTGGGCACAGATTCAACAAGACAAGAACGATAAGAAGAAAGAG 463 |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 235 AGATCCGGTGTCGATATTTGGGCACAGATTCAACAAGACAAGAACGACAAGAAGAAAGAG 294 Query 464 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGCTCGATTTTGTCTGAGAAGAAGAAG 523 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 295 GAAGAGATCGAGCCGGGTCAATCCGATGTATGGAGTTCGATTTTGTCGGAGAAGAAGAAG 354 Query 524 ACTGAATCGAGCAAGGACACTGTTCCTCCACCGTATGTTCATCCAT-TGATGAAACGTGC 582 |||||||||||||| ||| | ||||||||||||||||||||||| | ||||||||||||| Sbjct 355 ACTGAATCGAGCAACGACGCGGTTCCTCCACCGTATGTTCATCC-TCTGATGAAACGTGC 413 Query 583 GAGTTCCTTGAGTGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 642 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 GAGTTCCTTGAGCGAGAAAAGCCTCGAGATTTGTACTGAGAGTCTCGGATCCGAGACTGG 473 Query 643 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGCTGAGATCGAGATTCA 702 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 474 TTGCGATGGTTTCTCTTCGCATGCATCGTCGGAGACTGGAGATGTTGAAATCGAGATTCA 533 Query 703 TGATGAGACCAATCTCGTTGTTAACGTGACGGAGACGAAGGTTGAAGAAATAACAGAGAC 762 || ||||||||||||||| | |||||||||||||||||||| || ||| |||||||| | Sbjct 534 GGAGGAGACCAATCTCGTTATCAACGTGACGGAGACGAAGGTAGAGGAAGTAACAGAGGC 593 Query 763 TGAGATTGTGGTTGAGCAAGAATCATCAATCATTGTTCCGAATCACATAATCGAGCTGCC 822 |||| ||| | |||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 594 TGAGGTTGAGATTGAGCAAGAATCA--A-TCACGGTTCCGAATCACATAATCGAGCTGCC 650 Query 823 TCCAGGATCGTTTCCTCCTCCGATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 882 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 651 TCGAGGATCGTTTCCTCCTCCAATTCGTTCTCTCTCGAGCCAATCTGGTTCGTCTCTGCA 710 Query 883 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTTGAAGCTGTCTCTATGCCGTCGCA 942 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 711 CATGAAAACTCGCCGTGACAATGGCCGATTGGTTCTCGAGGCTGTCTCTATGCCGTCGCA 770 Query 943 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTCCTTACTTTTGCTGAAATCAG 1002 ||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct 771 CAACAACTTCTCCGCTAAGCGCCAAGACGGACGCCTCCTTCTCACCTTTGCTGAAATCAG 830 Query 1003 CAACGAACCCA--A-CTA---CGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 1056 | ||||||||| | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 831 CGACGAACCCATTAACGAAATCGACAAAGAAGACGAGATTGATTCGGAGGTTCAGTGGTT 890 Query 1057 CGACgaggaggaagaagaagaagaggaggaggaggatgaagaagaagaggCACCAGACGA 1116 |||||||||||||||||||||||| || || || | ||||||||||||||||||||||| Sbjct 891 CGACGAGGAGGAAGAAGAAGAAGAAGACGACGA--A-GAAGAAGAAGAGGCACCAGACGA 947 Query 1117 GTTTGCCTACAAGCCCAATGGGCTTCTCTATAAGATGGCACAAAAGCCCATTCCTATAAC 1176 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 948 GTTTGCCTACAAGCCCAATGGGCTTCTGTATAAGTTGGCACAAAAGCCCATTCCTATAAC 1007 Query 1177 TGTTCATAGGTTGGCCCATAAACCAATTGGTGTACCAAAGAGAAACTCTCGATGGCCTAT 1236 |||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| | Sbjct 1008 TGTTCATAGGTTGGCCTATAAACCCATTGGTGTACCCAAGAGAAACTCTAAATGGCCCGT 1067 Query 1237 GGCTGATGAATTCGACACCAAATCCGATCTGTCGACTCCGGTGGTTCACTCTCTGCCGCC 1296 ||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| Sbjct 1068 AACTGATGAATTCGACACCAAATCCGATCTGTCAACTCCGGTAGTCCACTCTCTACCGCC 1127 Query 1297 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCACCGTCCACGGTGGACGACAC 1356 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1128 GAGGCCAAGGGTGGCTCAGCTTGCTCGATCAACAAAACCGCCATCCACGGTGGACGACAC 1187 Query 1357 CGTTGGGGCCGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1416 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 CGTAGGAGCTGCTTGCTTCAACACATGTGACTACTCTTGGAAGTCCACTAACACTGAATC 1247 Query 1417 ATTTGGCCCAAA--CA--C--AAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1470 |||||||||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 1248 TTTTGGCCCAATTTCAAGCCCAAAAACCCAATTTCAAGCCCAAAACTTTGTCAACAAATC 1307 Query 1471 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 AATGGGTGACGGTTGGATAAATGGTTGCAAGGACCGAAGGAGGTCTCTCTTGTCCGTTGA 1367 Query 1531 GCCTTTCTGCATTGCCACATAA 1552 |||||||||||||||||| ||| Sbjct 1368 GCCTTTCTGCATTGCCACTTAA 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74123616770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5