BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22100.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894080 jgi|Araly1|894080|Al_scaffold_0006_2076 1748 0.0
Ahg910315 jgi|Araly1|910315|Al_scaffold_0001_569 272 5e-72
> Ahg894080 jgi|Araly1|894080|Al_scaffold_0006_2076
Length=1134
Score = 1748 bits (946), Expect = 0.0
Identities = 1066/1125 (95%), Gaps = 4/1125 (0%)
Strand=Plus/Plus
Query 60 GATGATGAAGAAGATGAAGGGAAGCCAAAGCTTTAGACAAAGACTTCTTCTTTCAACACT 119
||||| || || ||||||||||||||||| ||| || |||||||| |||||||| || ||
Sbjct 12 GATGAAGATGAGGATGAAGGGAAGCCAAAACTTGAGGCAAAGACTGCTTCTTTCGACTCT 71
Query 120 TTCTTCAACACCTATC-TCGATTGATGAGATTCGTGCCGACGAAACGATTCCTGGTCTCC 178
|||||||||||||||| | ||||||||| |||||||||||||| | ||||||||||||||
Sbjct 72 TTCTTCAACACCTATCGT-GATTGATGATATTCGTGCCGACGAGATGATTCCTGGTCTCC 130
Query 179 GACCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGACGACGCCGTCGTTG 238
| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 131 GCCCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGATGACGCATTCGTTG 190
Query 239 ATATTAACGAGACCGGGACTCGATTAAAGTACAAGCCTGGAACTATAGTGGGAGGGAAGA 298
| |||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||
Sbjct 191 AGGTTAACGAGACCGGGACTCAATTAAAGTATAAGCCTGGAATTATAATGGGAGGGAAGA 250
Query 299 ACTTGGTTCACAGCTGCTCGCTGAGTCGATCCATTGGCTATTATCTTGAGCCATTGCTTT 358
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 251 ACTTGGTTCACACCTGCTCGCTGAGTCGATCAATTGGCTATTATCTTGAGCCATTGCTTT 310
Query 359 TGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTCAAAGGAATTACAAATGATC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTCAAAGGAATTACAAATGATC 370
Query 419 CAAGAGACGCTAGCGTTGACACATTCCGTTCCACTACCTTGAATATCATAAAGCGTTTTG 478
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAAGAGACCCGAGCGTTGACACATTCCGTTCCACTACCTTGAATATCATAAAGCGTTTTG 430
Query 479 GAGTCCCTGCAGAAGATTTGGAGCTGAAAATCGAAGCCCGTGGAGTAGCTCCGAATGGAG 538
||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||
Sbjct 431 GAGTCCCTGCAGAAGATTTGGAGCTTAAAATTGAGGCCCGTGGAGTAGCTCCAAATGGAG 490
Query 539 GTGGAGAAGTTCTCTTAACAGTTCCAAATATTAAGACTCTAAGTGCGGTTCATTGGGTAG 598
|||||||| |||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 491 GTGGAGAAATTCTCTTAACTGTGCCAAATGTTAAGACTCTAAGTGCGGTTCATTGGGTAG 550
Query 599 AAGAAGGAATGGTGAAGAAGATACGTGGTACAACTTTCTCTACAAGAGTGACTAGTGACT 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 551 AAGAAGGAATGGTGAAGAAGATACGTGGTATAACTTTCTCTACAAGAGTGACTAGTGACT 610
Query 659 TTGAACATTCCATGAGATTCGCAGCTCGTGGTATCTTTAACAATCTCTTGCCTGATGTTC 718
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 611 TTGAACATTCCATGAGATTTGCAGCTCGTGGAATCTTTAACAATCTCCTGCCTGATGTTC 670
Query 719 ACATTTTCCAAGATCACAGAGCTGGCGCTCAGGCTGGAAAATCTCCTGGATACGGAATAT 778
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 671 ACATTTTCCAAGATCACAGAGTTGGCGCTCAGGCTGGAAAATCTCCTGGATACGGAATAT 730
Query 779 CATTGGCAGCAGAAACAACTACAGGATGTTTCATCTCTGCAGATACAACAGTGTCTTGTG 838
|||||| |||||||||||| ||||| |||| ||| |||||||||||||||||||||||||
Sbjct 731 CATTGGTAGCAGAAACAACCACAGGGTGTTACATGTCTGCAGATACAACAGTGTCTTGTG 790
Query 839 AAAGACCAGACGAAACTGGAGAGCTCGATGTAGAGAAGAAAGAGAGATCGCCAGCAGAAG 898
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 791 AAAGACCAGACGAAACTGGAGAGCTCGATGTAGAGAAGAAAGAGAGATTGCCAGCAGAAG 850
Query 899 ACACAGGAGTTGAAGTAGCTTCATGGCTTCTTCAAGAGATTGAAAAAGGTGGAGTTGTTG 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ACACTGGAGTTGAAGTAGCTTCATGGCTTCTTCAAGAGATTGAAAAAGGTGGAGTTGTTG 910
Query 959 ATTCAACACACCAGGGATTGTTGTTTCTACTGTGTGCGTTATCTGAACAAGACGTGTCAA 1018
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 911 ATTCAACACACCAGGGATTGTTGTTTCTACTGTGCGCGTTATCTGAACAAGATGTGTCAA 970
Query 1019 AGGTTCGAGTTGGAACATTATCTCCATATGCAGTGGAGACGTTGAGGAACATTAAGG-AG 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 971 AGGTTCGAGTTGGAACATTATCTCCATATGCAGTGGAGACGTTGAGGAACAT-AAGGGAG 1029
Query 1078 TTTCTGGGAGTTAAGTTTGCCATCAAACCTGATCCATTGACTGGGACTGTTATACTCAAG 1137
||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1030 TTTCTTGGAGTTAAGTTTAACATCAAACCTGATCCATTGACAGGGACTGTTATACTCAAG 1089
Query 1138 TGTACTGGAAGTGGCTTAATTAACCTCTCCAGAAAGCTCTCTTGA 1182
|| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 1090 TGCACCGGAAGTGGCTTAATTAACCTCTCCAGAAAGCTGTCTTGA 1134
> Ahg910315 jgi|Araly1|910315|Al_scaffold_0001_569
Length=279
Score = 272 bits (147), Expect = 5e-72
Identities = 211/241 (88%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 165 GATTCCTGGTCTCCGACCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGA 224
||| |||| |||||| |||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 3 GATCCCTGCTCTCCGCCCTCACGAAGTTAATCTTCTCCGCCACTTAGAAACTGTCACCGA 62
Query 225 CGACGCCGTCGTTGATATTAACGAGACC-G---GGACTCGATTAAAGTACAAGCCTGGAA 280
||||| |||||||| |||||||||||| | ||| || | |||||||||||| || ||
Sbjct 63 TGACGCTGTCGTTGAGATTAACGAGACCGGTAAGGATTC-AATAAAGTACAAGCATGTAA 121
Query 281 CTATAGTGGGAGGGAAGAACTTGGTTCACAGCTGCTCGCTGAGTCGATCCA-TTGGCTAT 339
|||| ||||||||||||||||||||||||||||| | ||||||||| | ||||||||
Sbjct 122 TTATAATGGGAGGGAAGAACTTGGTTCACAGCTGCGCTATGAGTCGATT-AGTTGGCTAT 180
Query 340 TATCTTGAGCCATTGCTTTTGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTC 399
|||||||||||||||||| ||||||| || |||| |||||||||||||||||||||||||
Sbjct 181 TATCTTGAGCCATTGCTTGTGTTGGGTTTATTTGAAAAGAAGCCTCTTTCGATTAGGCTC 240
Query 400 A 400
|
Sbjct 241 A 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5