BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22110.1 Length=1854 Score E Sequences producing significant alignments: (Bits) Value Ahg489063 jgi|Araly1|489063|fgenesh2_kg.6__2197__AT5G22110.1 2608 0.0 Ahg933710 jgi|Araly1|933710|scaffold_401698.1 237 2e-61 > Ahg489063 jgi|Araly1|489063|fgenesh2_kg.6__2197__AT5G22110.1 Length=1764 Score = 2608 bits (1412), Expect = 0.0 Identities = 1631/1732 (94%), Gaps = 33/1732 (2%) Strand=Plus/Plus Query 8 AAAAGAGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 67 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AAAA-AGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 60 Query 68 AATTCAAAAACAGAGGGTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 127 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AATTCAAAAACAGAGGCTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 120 Query 128 CCGATCAATTTCCCGACGACGATGACGGAGAAGCTATAGATCTTCTCCTCGATAACCTCC 187 ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 121 CCGATGAATTTCCCGACGACGCTGACGGAGAAGCTATCGATCTTCTCCTCGATAACCTCC 180 Query 188 AGGAAACGCATAAATCATCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAATC-GC 246 | ||| | |||||||| |||||||||||||||||||||||||||||||||||||| | | Sbjct 181 AAGAATCTCATAAATCTTCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAACCAG- 239 Query 247 TTGTTAGGAGCTCATAACGCCCCGGAGGAACCTACAACATCTGCTTCTTCCTTGG-CGAT 305 ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || | Sbjct 240 TTGTTGGGAGCTCATAACGCGCCGGAAGAACCTACAACATCTGCTTCTTCCTTGGCCG-T 298 Query 306 CATCGACGCGTTTCTGGTGCCAAAGTTTGGATATGATTCTGTTaaaaaaaaGTTCAACGA 365 ||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| || Sbjct 299 CATCGACGCCTTTCTGATTCCAAAGTTTGGATATGATTCCGTTAAAAAAAAGTTCAATGA 358 Query 366 GCATACGAGTAGCTTGCCTATTCACGGTGAGGCTTCTGCAAAAACAGCTTTATACAGGGA 425 | ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 359 GTATACGAGTAGCCTGCCTATTCATGGTGAGGCTTCTGCAAAAACAGCATTATACAGGGA 418 Query 426 ACGATTCATGTTGTTGTCGCAGAGAGTTTCTCGTGCAGAGCATTTTTCTAGGCCAGCATT 485 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 419 GCGATTCATGTTGCTGTCGCAGAGAGTTTCTCGCGCAGAGCATTTTTCTAGGCCAGCATT 478 Query 486 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTGATTTC 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 479 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTAATTTC 538 Query 546 TCAAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTA 605 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 539 TCAAAGGGGAAGGAAATGGGTGATGGGAGTTATATCACAGTTAGAAGATGGACATTTCTA 598 Query 606 CCTGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 665 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CCTGGAGGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 658 Query 666 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGCGAAATGCAGGTTAACGGTATCTT 725 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 659 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAATGCAGGTGAACGGTATCTT 718 Query 726 TCAGGTGATTACATGTGGATTTCCTCCCTTAGAAGACAGGGACAAAACACTAAAGGCGCA 785 ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || Sbjct 719 TCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGGACAAAACTCTAAAGGCACA 778 Query 786 TTCTGAATATGATTTCTTCGGAGGCGGCACACTAACTAAAGAAGAGATGATTAAACTTGC 845 ||||||||| || ||||| ||||||||||||| |||||||||||||| ||||| |||||| Sbjct 779 TTCTGAATACGACTTCTTTGGAGGCGGCACACAAACTAAAGAAGAGACGATTAGACTTGC 838 Query 846 AGACCTTGAAAGACAAGCGGTGAATGACACATTTGTCATATTGTCTGACATATGGTTGGA 905 |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 839 AGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATATTGTCTGATATATGGTTGGA 898 Query 906 CGACGAAGAGGTTATGAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 965 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 958 Query 966 AGTACCCTCCTTGTTTGTTTTTATGGGAAATTTTTGTTCTCGCCCATGCAACTTATCCTT 1025 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 959 AGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCTCGCCCATGCAACTTATCCTT 1018 Query 1026 TGGTTCGTATTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAACCA 1085 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1019 TGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAATCA 1078 Query 1086 TCCACGGCTTAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGAGGACGCAGGTCC 1145 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1079 TCCACGGCTAAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGGGGACGCAGGTCC 1138 Query 1146 CTCAACAGTCTTGCCAAGATGCGCTTTACCGAAATATTTAACCGAAGAGCTTCGAAACAT 1205 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1139 CTCAACAGTCTTACCAAGATGCGCTTTACCGAACTATTTAACTGAAGAGCTTCGAAACAT 1198 Query 1206 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1258 Query 1266 TGTGTTCTTCCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1325 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TGTGTTCTTTCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1318 Query 1326 CTCAGAAGAAACGAATGACCCTTTTAAGCATCTTGTCTACACAATAACTCATCAGAGCCA 1385 | |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1319 CACAGAAGAAACCAAGGACCCTTTTAAGCATCTTGTCTACACAATAACACATCAGAGCCA 1378 Query 1386 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACGCTCTTCG 1445 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1379 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACTCTCTTCG 1438 Query 1446 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGAGGTTTGCAA 1505 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1439 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAA 1498 Query 1506 ATTTGGGGGAACAACATGTTTCAATCCAGGCTC-TTTCTCAACTGATAGCACATTCGTAG 1564 ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 1499 ATTTGGGGGAACAACATGTTTCAATCCAGGCTCCTTT-TCAACTGATAGCACCTTCGTAG 1557 Query 1565 CTTATCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCTCCTTTTAAAATT 1624 |||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 1558 CTTATCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCT------A----- 1606 Query 1625 CATCCCAGGAGATCAATTGAGTGCCATTTTTACCAGACAAGCCTGAGCTTAAAAGGTATA 1684 | | ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1607 -------G-A--TCAATTGAGTGCCATTTTTACCATACAAGCCTGAGCTTAAAAGGTATA 1656 Query 1685 CAGAAAGAGTGaaaaaaa--TA--CTTCATGCCCCATTCTTTGCTTCTCTGT 1732 ||||||||||||||||| || |||||| ||| ||||||||||||| ||| Sbjct 1657 AAGAAAGAGTGAAAAAAACATATACTTCATTCCCTATTCTTTGCTTCT-TGT 1707 > Ahg933710 jgi|Araly1|933710|scaffold_401698.1 Length=1010 Score = 237 bits (128), Expect = 2e-61 Identities = 266/327 (81%), Gaps = 32/327 (10%) Strand=Plus/Plus Query 1142 GTCCCTCAACAGTCTTGCCAAGATGCGCTTTACCGA-AATATTTAACCGAAGAGCTTCGA 1200 |||||| ||||||||||||||||||| |||||| | | |||| |||||||||||||||| Sbjct 470 GTCCCTTGACAGTCTTGCCAAGATGCGGTTTACC-AGAGTATTCAACCGAAGAGCTTCGA 528 Query 1201 -AACATTATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCA 1259 || ||||||||||||| ||||||||||||||||||||| || Sbjct 529 GAA-GTTATTCCCAATGCGATATTTTCAAGCAATCCTTGC-------AG----------- 569 Query 1260 AGAGATTGTGTTCTTCCGACAAGATCTTCT-GTATCGGATGCGTCGTTCATGCTTAG-TA 1317 ||||||||||||||||||||||| ||| | ||| |||||| | |||||| |||| | || Sbjct 570 -GAGATTGTGTTCTTCCGACAAGACCTTGTGGTACCGGATGAGCCGTTCACGCTT-GTTA 627 Query 1318 ACCCCTTCCTCAGAAGAAACGAATGA-CCCTTTTAAGCATCTTGTCTACACAA-TAACTC 1375 | ||||||||||||||||| ||||| |||||| || || ||||||| || || ||| || Sbjct 628 AAACCTTCCTCAGAAGAAACTAATGACCCCTTTGAA-CACCTTGTCTCCA-AATTAATTC 685 Query 1376 ATCAGAGCCATCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATC 1435 ||||||||||||||||||||||||||||| || | ||||| || ||||||||||| |||| Sbjct 686 ATCAGAGCCATCTATGTCCTCTACCTCTCTTGTTTCAACCAATAATTTGGAACTATGATC 745 Query 1436 AC-GCTCTTCGACTGTACCCAACTCCT 1461 || | ||| ||||| || ||||||||| Sbjct 746 ACTG-TCTACGACTATATCCAACTCCT 771 Score = 132 bits (71), Expect = 1e-29 Identities = 94/105 (90%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 548 AAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTACC 607 |||| | || || |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3 AAAGAGTAA-GAGATGGGTGATGGGCTTGATATCACAGTTGGAAGATGGACATTTCTACC 61 Query 608 TGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAA 652 | ||| |||||||||||| |||| |||||||| |||||||||||| Sbjct 62 TTGAATACCTTTCAGCTTGTGTAAAGATTGATTTGTCCAAAGCAA 106 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69628967860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5