BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22110.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489063 jgi|Araly1|489063|fgenesh2_kg.6__2197__AT5G22110.1 2608 0.0
Ahg933710 jgi|Araly1|933710|scaffold_401698.1 237 2e-61
> Ahg489063 jgi|Araly1|489063|fgenesh2_kg.6__2197__AT5G22110.1
Length=1764
Score = 2608 bits (1412), Expect = 0.0
Identities = 1631/1732 (94%), Gaps = 33/1732 (2%)
Strand=Plus/Plus
Query 8 AAAAGAGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 67
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAA-AGAGAAGTAGCGAGAATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGA 60
Query 68 AATTCAAAAACAGAGGGTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 127
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTCAAAAACAGAGGCTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCG 120
Query 128 CCGATCAATTTCCCGACGACGATGACGGAGAAGCTATAGATCTTCTCCTCGATAACCTCC 187
||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CCGATGAATTTCCCGACGACGCTGACGGAGAAGCTATCGATCTTCTCCTCGATAACCTCC 180
Query 188 AGGAAACGCATAAATCATCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAATC-GC 246
| ||| | |||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 181 AAGAATCTCATAAATCTTCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAACCAG- 239
Query 247 TTGTTAGGAGCTCATAACGCCCCGGAGGAACCTACAACATCTGCTTCTTCCTTGG-CGAT 305
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || |
Sbjct 240 TTGTTGGGAGCTCATAACGCGCCGGAAGAACCTACAACATCTGCTTCTTCCTTGGCCG-T 298
Query 306 CATCGACGCGTTTCTGGTGCCAAAGTTTGGATATGATTCTGTTaaaaaaaaGTTCAACGA 365
||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 299 CATCGACGCCTTTCTGATTCCAAAGTTTGGATATGATTCCGTTAAAAAAAAGTTCAATGA 358
Query 366 GCATACGAGTAGCTTGCCTATTCACGGTGAGGCTTCTGCAAAAACAGCTTTATACAGGGA 425
| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 359 GTATACGAGTAGCCTGCCTATTCATGGTGAGGCTTCTGCAAAAACAGCATTATACAGGGA 418
Query 426 ACGATTCATGTTGTTGTCGCAGAGAGTTTCTCGTGCAGAGCATTTTTCTAGGCCAGCATT 485
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 GCGATTCATGTTGCTGTCGCAGAGAGTTTCTCGCGCAGAGCATTTTTCTAGGCCAGCATT 478
Query 486 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTGATTTC 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 TGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTAATTTC 538
Query 546 TCAAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTA 605
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 539 TCAAAGGGGAAGGAAATGGGTGATGGGAGTTATATCACAGTTAGAAGATGGACATTTCTA 598
Query 606 CCTGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 665
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCTGGAGGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGG 658
Query 666 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGCGAAATGCAGGTTAACGGTATCTT 725
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 659 ATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGTGAAATGCAGGTGAACGGTATCTT 718
Query 726 TCAGGTGATTACATGTGGATTTCCTCCCTTAGAAGACAGGGACAAAACACTAAAGGCGCA 785
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 719 TCAGGTGATTACATGCGGATTTCCTCCTTTAGAAGACAGGGACAAAACTCTAAAGGCACA 778
Query 786 TTCTGAATATGATTTCTTCGGAGGCGGCACACTAACTAAAGAAGAGATGATTAAACTTGC 845
||||||||| || ||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 779 TTCTGAATACGACTTCTTTGGAGGCGGCACACAAACTAAAGAAGAGACGATTAGACTTGC 838
Query 846 AGACCTTGAAAGACAAGCGGTGAATGACACATTTGTCATATTGTCTGACATATGGTTGGA 905
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 839 AGACCTCGAAAGACAAGCGGTGAGTGACACATTTGTCATATTGTCTGATATATGGTTGGA 898
Query 906 CGACGAAGAGGTTATGAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 965
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGACGAAGAGGTTATCAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGAC 958
Query 966 AGTACCCTCCTTGTTTGTTTTTATGGGAAATTTTTGTTCTCGCCCATGCAACTTATCCTT 1025
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 959 AGTACCGTCCTTGTTTGTTTTTATGGGAAACTTTTGTTCTCGCCCATGCAACTTATCCTT 1018
Query 1026 TGGTTCGTATTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAACCA 1085
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 TGTTTCGTACTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAATCA 1078
Query 1086 TCCACGGCTTAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGAGGACGCAGGTCC 1145
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 TCCACGGCTAAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGGGGACGCAGGTCC 1138
Query 1146 CTCAACAGTCTTGCCAAGATGCGCTTTACCGAAATATTTAACCGAAGAGCTTCGAAACAT 1205
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1139 CTCAACAGTCTTACCAAGATGCGCTTTACCGAACTATTTAACTGAAGAGCTTCGAAACAT 1198
Query 1206 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGAT 1258
Query 1266 TGTGTTCTTCCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1325
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTGTTCTTTCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTC 1318
Query 1326 CTCAGAAGAAACGAATGACCCTTTTAAGCATCTTGTCTACACAATAACTCATCAGAGCCA 1385
| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1319 CACAGAAGAAACCAAGGACCCTTTTAAGCATCTTGTCTACACAATAACACATCAGAGCCA 1378
Query 1386 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACGCTCTTCG 1445
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 TCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACTCTCTTCG 1438
Query 1446 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGAGGTTTGCAA 1505
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1439 ACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGATGTGTGCAA 1498
Query 1506 ATTTGGGGGAACAACATGTTTCAATCCAGGCTC-TTTCTCAACTGATAGCACATTCGTAG 1564
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1499 ATTTGGGGGAACAACATGTTTCAATCCAGGCTCCTTT-TCAACTGATAGCACCTTCGTAG 1557
Query 1565 CTTATCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCTCCTTTTAAAATT 1624
|||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1558 CTTATCGACCGTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGATTCT------A----- 1606
Query 1625 CATCCCAGGAGATCAATTGAGTGCCATTTTTACCAGACAAGCCTGAGCTTAAAAGGTATA 1684
| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1607 -------G-A--TCAATTGAGTGCCATTTTTACCATACAAGCCTGAGCTTAAAAGGTATA 1656
Query 1685 CAGAAAGAGTGaaaaaaa--TA--CTTCATGCCCCATTCTTTGCTTCTCTGT 1732
||||||||||||||||| || |||||| ||| ||||||||||||| |||
Sbjct 1657 AAGAAAGAGTGAAAAAAACATATACTTCATTCCCTATTCTTTGCTTCT-TGT 1707
> Ahg933710 jgi|Araly1|933710|scaffold_401698.1
Length=1010
Score = 237 bits (128), Expect = 2e-61
Identities = 266/327 (81%), Gaps = 32/327 (10%)
Strand=Plus/Plus
Query 1142 GTCCCTCAACAGTCTTGCCAAGATGCGCTTTACCGA-AATATTTAACCGAAGAGCTTCGA 1200
|||||| ||||||||||||||||||| |||||| | | |||| ||||||||||||||||
Sbjct 470 GTCCCTTGACAGTCTTGCCAAGATGCGGTTTACC-AGAGTATTCAACCGAAGAGCTTCGA 528
Query 1201 -AACATTATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCA 1259
|| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 529 GAA-GTTATTCCCAATGCGATATTTTCAAGCAATCCTTGC-------AG----------- 569
Query 1260 AGAGATTGTGTTCTTCCGACAAGATCTTCT-GTATCGGATGCGTCGTTCATGCTTAG-TA 1317
||||||||||||||||||||||| ||| | ||| |||||| | |||||| |||| | ||
Sbjct 570 -GAGATTGTGTTCTTCCGACAAGACCTTGTGGTACCGGATGAGCCGTTCACGCTT-GTTA 627
Query 1318 ACCCCTTCCTCAGAAGAAACGAATGA-CCCTTTTAAGCATCTTGTCTACACAA-TAACTC 1375
| ||||||||||||||||| ||||| |||||| || || ||||||| || || ||| ||
Sbjct 628 AAACCTTCCTCAGAAGAAACTAATGACCCCTTTGAA-CACCTTGTCTCCA-AATTAATTC 685
Query 1376 ATCAGAGCCATCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATC 1435
||||||||||||||||||||||||||||| || | ||||| || ||||||||||| ||||
Sbjct 686 ATCAGAGCCATCTATGTCCTCTACCTCTCTTGTTTCAACCAATAATTTGGAACTATGATC 745
Query 1436 AC-GCTCTTCGACTGTACCCAACTCCT 1461
|| | ||| ||||| || |||||||||
Sbjct 746 ACTG-TCTACGACTATATCCAACTCCT 771
Score = 132 bits (71), Expect = 1e-29
Identities = 94/105 (90%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 548 AAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTACC 607
|||| | || || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 AAAGAGTAA-GAGATGGGTGATGGGCTTGATATCACAGTTGGAAGATGGACATTTCTACC 61
Query 608 TGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAA 652
| ||| |||||||||||| |||| |||||||| ||||||||||||
Sbjct 62 TTGAATACCTTTCAGCTTGTGTAAAGATTGATTTGTCCAAAGCAA 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5