BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22120.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894082 jgi|Araly1|894082|Al_scaffold_0006_2078 1664 0.0
> Ahg894082 jgi|Araly1|894082|Al_scaffold_0006_2078
Length=1155
Score = 1664 bits (901), Expect = 0.0
Identities = 1080/1164 (93%), Gaps = 21/1164 (2%)
Strand=Plus/Plus
Query 60 ATGGAGAACACACGGCCAAACGAAGAAGAAGGAAGAATAAGTGAACCAAATTGGAGCGAA 119
|||||||||| |||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAACAGACGGCC-AA--ATGAAGAAGGAAGAATAAGTGAACCAAATTGGAGCGAG 57
Query 120 CGAGTGGAGGATCTCGTGGTAGCCGGCGACGTCACGGCGGCGATCTCCTTTCTCGAGTCT 179
|| ||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CGCGTGGAAGATCTCGTAGCAGCCGGCGACGTCACGGCGGCGATCTCGTTTCTCGAGTCT 117
Query 180 TTGGAGACCAATCTTCAATCGCGGTTAGGTTCTTCCTCCTCCGGCGAGAGAACGGAGTTT 239
||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct 118 TTGGAGACCAATCTTCAGTCACGATTGGGTTCTTCCTCCTCCGGCGAGAGAACAGAGTTT 177
Query 240 GGGCTT-CAATTATCCGCCGCTCTTACGCAGTTGGCGGATCTCTACTCTTCTGAGGGACT 298
||| || |||||| | |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 178 GGG-TTGCAATTAGCAGCCGCTCTTACGCAATTGGCGGATCTCTACTCTTCTCAGGGACT 236
Query 299 TTCCCTTAAATCCGATGAGCTTCGAACTCGCTCTTCCCTCATTAAGCAACGAGCGTTGGA 358
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 237 TTCCCTAAAATCCGATGAGCTTCGAACTCGTTCTTCCCTCATTAAGCAACGAGCGTTGGA 296
Query 359 TTGTGATCTTGCCTCTTCAAGAAG-TTCCGGCAATGTAGAGAATCAATCTGTTGCTTCCA 417
|||||||| ||| |||||||| || ||||||| |||||||||||||| | |||||||||
Sbjct 297 TTGTGATCGTGCTTCTTCAAG-AGATTCCGGCGATGTAGAGAATCAAAGTATTGCTTCCA 355
Query 418 GTGGACTCAAGTCTGACCCAAATGTCTCAAGCT-TTGATGCTGAT---GGGAAAACGGAG 473
||||||||||||||||||||||||||| | || ||||| | || |||||||| ||
Sbjct 356 ATGGACTCAAGTCTGACCCAAATGTCTC-ACCTGCTGATGGTTATAAAGGGAAAACAAAG 414
Query 474 GATT-C-CAAA-GTATCTAGCAGTAATTCAGCTGCTCATGATTCTTCAGATGATGATTGG 530
|||| | |||| ||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 415 GATTCCACAAACGTACCTAGCAATAATTCAGCTGCTCATGATTTTTCAGATGATGATTGG 474
Query 531 GAAGCTCTTGCAGATGTTGAACCGAGTAAGTTACTCCCCGTAGAAGAGTTGCCTGAAATA 590
||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 475 GAAGCTCTTGCAGATCTTGAACCGAGTAAATTACTCCCCGTGGAAGAGTTGCCTGAAATA 534
Query 591 TCAAAGCTTTCGGTTGAAGAACCTAAAGTTCAAGGACCTAAGAGACGTGGAAGGGGAACG 650
|||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 535 TCAAAGCTTTTGGTTGAAGAACCTAAACTTGAAGGACCTAAGAGACGTGGAAGAGGAACG 594
Query 651 TTTACTTATAAGAGTGATGCAATGTACAGTGATCGAGATTTCTCTGAGTCGAGGTTTGAT 710
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| || |
Sbjct 595 TTTACTTATAAGAGGGATGCGATGTATAGTGATCGAGATTTCTCTGAGTCAAGG-TT--T 651
Query 711 GATGATTCAGAAGATAACGATTTATCTCGTGAGTCAGAGAAGACTGATGAATCACTGAAA 770
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 652 GATGATTCAGAAGATAACGATTTATCTCGTGATTCAGAGAAGAATGATGAATCACTGAAA 711
Query 771 TCCAAGTATGGCACACGCCATGTCCTCGTACTTGCTGGTTTTTCTCCAAGTTTGAGAACT 830
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 712 TCCAAGTATGGCACACGCCATGTCCTCGTACTTGCTGATTTTTCTCCAAGTTTGAGAACT 771
Query 831 ACTGAATTGGAGAAGCTATTTAAAGACTTCAAAGATAGTGGATTTATCATTCGTTGGGTC 890
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GCTGATTTGGAGAAGCTATTTAAAGACTTCAAAGATAGTGGATTTATCATTCGTTGGGTC 831
Query 891 AATGATACAACAGCACTTGCAGTCTTCAAAACCCCTTCAGCTGCTCTAGAGGCTTGCAAG 950
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 832 AATGATACAACAGCACTTGCAGTCTTCAAAACCCCTGCAGCTGCGCTAGAGGCTTGCAAC 891
Query 951 CATGTTCAATGTTCATTCACAATACGTGTACTCGATGATAACGATTCTCTTTTGGGCTCA 1010
|||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct 892 CATGTTCAATGTTCATTCACCATACGTGTTCTCGATGATCACGATTCTCTTTTGGGCTCG 951
Query 1011 ATTTCTGGAAAAGATTTGGAACCGCCGTCTCAAAGACCAAAGACATCAGCGAAAACAGCT 1070
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 952 ATATCTGGAAAAGATTTGGAACCGCCGTCTCAAAGACCAAAGACATCAGCGAGAACAGCT 1011
Query 1071 CAACGGTTGATTGCTCACAGCATGGGATTGAAGCTACCGGCTTCTGGATTCGGGTCTAAA 1130
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 CAACGGTTGATTGCTCACAGTATGGGATTGAAGCTACCTGCTTCTGGATTCGGGTCTAAA 1071
Query 1131 GAGC---GAGACCAAGAAGCTGCCCGGAAAAACCGGATTGTCTCGAGACAGAAACAACGG 1187
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1072 GAGCTACGAGACCAAGAAGCTGCCCGAAAAAACCGGATTGTCTCGAGACAGAAACAACGG 1131
Query 1188 GAAGATGCTTGGGGAGATGACTGA 1211
||||||||||||||||||||||||
Sbjct 1132 GAAGATGCTTGGGGAGATGACTGA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5