BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22130.2
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941711 jgi|Araly1|941711|scaffold_602255.1 1626 0.0
> Ahg941711 jgi|Araly1|941711|scaffold_602255.1
Length=1394
Score = 1626 bits (880), Expect = 0.0
Identities = 1012/1076 (94%), Gaps = 7/1076 (1%)
Strand=Plus/Plus
Query 584 TTCAGATTTACTGGTCGGCTGGTTTATCCATAAGATTTTGAAACAACGTAAGGTGCCTGA 643
||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 323 TTCTGATTTACTGGTCGGCTGGTTTGTCCATAAGATTTTGAGAGAACGTAAGGTGCCTGA 382
Query 644 GAAGATATGTACATATTCTGTAATGGTTTGGCTTTTCAATCCGTTTACATTCACTATTGG 703
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 383 GAAGATATGTACATATTCTGTTATGGTTTGGCTTCTCAATCCGTTTACATTCACTATTGG 442
Query 704 AACCAGAGGGAACTGTGAACCCATCGTTTGTGCCATGATATTATGGATCATTC-TCTGC- 761
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 443 AACCAGAGGGAACTGTGAACCCATCGTTTGTGCCATGATATTATGGATCA-TCATCT-CT 500
Query 762 CTAATGCAAGGTAATTTGTTACAAGCTGCATTTTGGTACGGGCTTGTTGTGCATTTCAGG 821
|| |||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 501 CTTATGCGAGGTAATCTGTCACAAGCTGCATTTTGGTATGGGCTTGTTGTGCATTTCAGG 560
Query 822 GTCTATCCTATTATCTATGCCTTGCCAATCATCCTGGTTCTTGATACCCAGGTATTTAGA 881
|||||||||||||| ||||| || ||||||||||||||||| ||| ||||| ||||||||
Sbjct 561 GTCTATCCTATTATTTATGCGTTACCAATCATCCTGGTTCTCGATTCCCAGATATTTAGA 620
Query 882 TCTGGTCAAAAGCCGGCTCTTTTGTATTGGAATACCGGTCAGGCCAAGACACCTGCCAGT 941
|||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||
Sbjct 621 TCTGGTCAAAAGCCTGCTCTCGAGGATTGGAATACCGGTCAGGCCAAGACACCTATCAGC 680
Query 942 AACATGGAGAGAAAAACATTCCTCTTCAATCTCT-TGACCACCTTGAAAAGTTTATTTTC 1000
|||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 681 AACACGGAGAGAAAAACATTCCTCTTTAATCTCTCT-ACCACCTTGAAAAGTTTATTTTC 739
Query 1001 CAGGGAGAGAATCATGTTTGCTTTGATATCCGGGGGAGTTTTTCTAGCTTGCAATGCTGT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CAGGGAGAGAATCATGTTTGCTTTGATATCCGGGGGAGTTTTTCTAGCTTGCAATGCTGT 799
Query 1061 TTCCTTCTATTTTTATGGACAAGAGTTCCTGCATGAGGCTCTCTTATATCACCTTACTCG 1120
||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||
Sbjct 800 TTCTTTCTATTTTTATGGACACGAGTTCCTGCACGAGGCTCTCTTATATCATCTGACTCG 859
Query 1121 AACAGATCCAAGGCACAACTTCTCCATCTACTTCTATCACATATATCTTCACTATGAGCG 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GACAGATCCAAGGCACAACTTCTCCATCTACTTCTATCACATATATCTTCACTATGAGCG 919
Query 1181 CCAGTTTTCAGCTGTGGAGAAGCTTATCTCGTTTTTACCCCAGTTTACAGTACAGTTTGC 1240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 920 CCAGTTTTCAGCTGTGGAGAAGCTTATCTCGTTTTTACCTCAGTTTACAGTACAGTTTGC 979
Query 1241 TCTAGTCTTCTGCTTCTCCCAGGATCTAGTGTTCTGCATCTTTCTCCAAACCGTTGCATT 1300
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCTAGTCTTCTCCTTCTCTCAGGATCTAGTGTTCTGCATCTTTCTCCAAACCGTTGCATT 1039
Query 1301 TGTCACTTTCAATAAGGTGATAACTGCGCAGTACTTTGTGTGGTTTTATTGCCTGCTACC 1360
||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1040 TGTGGCTTTCAATAAGGTGATAACCGCACAGTACTTTGTGTGGTTCTATTGCCTGCTACC 1099
Query 1361 CCTGATTCTACCATGGAGCCATATGAAGCTGAAATGGGAAGGCTTGTTATGCATCATTAT 1420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CCTGATTCTACCATGGAGCCGTATGAAGCTGAAATGGGAAGGCTTGTTATGCATCATTAT 1159
Query 1421 GTGGATCGGAGCTCAGACACATTGGCTCTTATGGGGATACATGCTCGAGTTCAAGGGCGT 1480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1160 GTGGATCGGAGCTCAGACACATTGGCTCTTATGGGGATACATGCTCGAATTCAAGGGCAT 1219
Query 1481 TAATGTCTTTCTACCGCTATGGATCGCGAGTTTGCTGTTTCTGGCTGCAAACACCTTCGT 1540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TAATGTCTTTTTACCGCTATGGATCGCGAGTTTGCTGTTTCTGGCTGCAAACACCTTCGT 1279
Query 1541 CCTTGTCAGAATCATACAACGCCATCGATTCTCTCCTCTCTTCAGACGGTATGAATCGTC 1600
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCTCGTCAGAATCATACAACACCATCGATTCTCTCCTCTCTTCAGACGGTATGAATCGTC 1339
Query 1601 CTCTTCTTCAAACAATGTTACCAAAGAAGACTGAGACTAGCCAAAAGTTATTTGCT 1656
||| |||||||| |||||||| ||| ||||||| ||| |||| ||| ||||||
Sbjct 1340 CTCCTCTTCAAAGAATGTTACAAAACTTGACTGAGCCTAATCAAA-GTTCTTTGCT 1394
Score = 516 bits (279), Expect = 3e-145
Identities = 312/328 (95%), Gaps = 1/328 (0%)
Strand=Plus/Plus
Query 201 AAGATTCAGAAGATAAGCGATATGTCTCGTGAATCAGAGAACACTGATGATGAACCATCG 260
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1 AAGATTCAGAAGATAA-CGATATGTCTCGTGAATTAGAGAACACTGATGATGAACCACCG 59
Query 261 AAATGGATGAAGTTCCGTTCACTACTGGTGTTCTCGATGCTTCTGCGTGTGTTTTTGATT 320
|||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||||||
Sbjct 60 AAATGGATGAAGTTTCGTTCTCTGCTGGTATTCTCGATGCTTCTGCGTATGTTTTTGATT 119
Query 321 GTTTATGGAGAATGGCAAGATGCTCATATGGAGGTCCGGTACACTGATGTTGATTACATT 380
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 120 GTTTATGGAGAATGGCAAGATGCTCATATGGAGGTACGGTACACTGACGTTGATTACATT 179
Query 381 GTATTTTCCGATGCTGCTTCGTTGATGGCATCCGGAGAATCTCCTTACAAGCGAACCACA 440
||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||
Sbjct 180 GTATTTTCCGATGCTGCGTCGTTGATGGCATCCGGTGAGTCTCCTTACAAGAGAACCACA 239
Query 441 TACCGTTATTCGCCTTTGCTCGCGCTTCTTCTGACCCCTAATTCCTTCTTTCATCGGTCA 500
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 240 TACCGTTATTCGCCTTTGCTTGCCCTTCTTCTGACCCCTAATTCCTTCTTTCATCGGTCA 299
Query 501 TGGGGAAAGTTTCTCTTCTCAGCTTCTG 528
||||||||||||||||||||||||||||
Sbjct 300 TGGGGAAAGTTTCTCTTCTCAGCTTCTG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5