BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22140.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941712 jgi|Araly1|941712|scaffold_602256.1 1803 0.0
> Ahg941712 jgi|Araly1|941712|scaffold_602256.1
Length=1139
Score = 1803 bits (976), Expect = 0.0
Identities = 1086/1139 (95%), Gaps = 7/1139 (1%)
Strand=Plus/Plus
Query 232 GAGCTTGAATCTG-TAAAAATGGAAGGCATTGAATCTGGGTCTAAACAAGGAAAGAGAGT 290
||||||||||| | ||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 4 GAGCTTGAATC-GCTAAAAATGGAAGGGATTGAATCTGGTTCTAGACAAGGAAAGAGAGT 62
Query 291 GGTTGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAGTTCGATGC 350
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGTGGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAGTTCGATGC 122
Query 351 TGAAGTCACACTCATCGATCCGAAGGAGTATTTTGAGATTACATGGGCAAGTTTGAGATC 410
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 TGATGTCACACTCATCGATCCGAAGGAGTACTTTGAGATTACATGGGCAAGTTTGAGATC 182
Query 411 CATGGTGGAGCCTAAGTTTGCTGAGAGAACAGTGATTAACCACAAGAGTTACTTGAAACA 470
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 183 CAAGGTGGAGCCTAAGTTTGCTGAAAGAACAGTGATTAACCACAAGAGTTACTTGAAACA 242
Query 471 AGGCCGTCTTGTAACTTCTCCGGCGATCAATATCACAGAGAGTGATGTTATGACTGAAGA 530
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 243 AGGTCGTGTTGTAACTTCTCCGGCGATCAATATCACAGAGACTGATGTTATGACTGAAGA 302
Query 531 TGGATCTGTGATTGGATATGATTATCTTGTGATTGCTACAGGTCACAATGACTTGTTCCC 590
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 303 TGGATCTGTGATTGGATATGATTATCTTGTTATTGCTACAGGTCACAATGACTTGTTCCC 362
Query 591 TAAAACTAGACAAGAGAAGCTGTCACATTATCAATCTGAATATGAGAAGATAAAATCTTC 650
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 363 TAAAACTAGACAAGAGAAGCTGTCACATTACCAAGCTGAATATGAGAAGATCAAATCTTC 422
Query 651 TGGATCAGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGGAGCTAGCTGCGGAAATCGC 710
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 TGGATCAGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGGAGCTTGCTGCGGAAATCGC 482
Query 711 GGTTGATTTCCCGGAGAAGAAGGTTACTCTGGTGCATAAAGGACCAAGATTGCTTGAGTT 770
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 483 GGTTGATTTTCCGGAGAAGAAGGTTACTCTGGTGCATAAAGGACCAAGATTGCTTGAATT 542
Query 771 TGTTGGACAAAAAGCTGCTGATAAAGCATCTGATTGGTTAGAATCAAAGAAAGTGGAAGT 830
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 TGTTGGACAAAAAGCTGCTGATAAAGCATCTGACTGGTTAGAATCAAAGAAAGTGGAAGT 602
Query 831 TATATTGAACCAATCTGTGGATTTGAGTTCAGCTTCGGATGGAAACAAAATATACCGGAC 890
|||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 603 GATATTGAATCAATCTGTGGATTTGAGTTCAGCTTCAGATGGAAACAAAACATACCGGAC 662
Query 891 TTCAGGAGGAGAAACTATACACGCAGATAT-TCACTTCCTCTGTGTTGGGAAACCTTTGT 949
||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||
Sbjct 663 TTCAGGAGGAGAAACTATACATGCAGAT-TGTCATTTCCTCTGTGTTGGGAAACCTTTGT 721
Query 950 CTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTTGGATGGTAAAGGAAGAGTCA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 722 CTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTTGGATGGTAAAGGAAGGGTTA 781
Query 1010 TGGTCGATGAGTACTTGCGGATTAGAGGTCGAAGCAATGTATTCGCTGTTGGAGATATCA 1069
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 782 TGGTCGATGAGTACTTGCGAATTAGGGGTCGAAGCAATGTATTCGCCATTGGAGATATCA 841
Query 1070 CTAATATCCCTGAGATGAAACAAGGATATATAGCAGAGACTCATGCTAATGTCGTTGTGA 1129
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 842 CTAATATCCCGGAGATGAAACAAGGATATATAGCGGAGACTCATGCTAATGTGGTTGTGA 901
Query 1130 AGAACATAAAGGTAATGATGTC-AGGTGGGAAAAAGAAGAAGATGTCGACTTACAAGCCC 1188
| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 902 AAAACATAAAGGTAATGATGTCGAGC-GGTAAAAAGAAGAAGATGTCGACTTACAAGCCT 960
Query 1189 GGTCCAGAGTTGGCCATTGTATCTTTAGGAAGAAAGGACTCGGTGGCTCAGTTTCCGTTT 1248
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTCCAGAGATGGCCATTGTATCTTTAGGAAGAAAGGACTCGGTGGCTCAGTTTCCGTTT 1020
Query 1249 GTGACAGTTGTTGGTTGCCTCCCTGGTTTGATCAAGTCTAAGGATCTGTTTGTGGGGAAG 1308
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1021 GTAACAGTTGTTGGTTGCCTCCCTGGTTTGATCAAGTCAAAGGATCTGTTTGTGGGAAAG 1080
Query 1309 ACAAGGAAGGCAAGAGGCCTAAATCCTAAACTTGTATAAGTTTGATTCCTAtt-gtgtt 1366
|| |||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||
Sbjct 1081 ACGAGGAAGGCAAGAGGACTAAATCCTAAACTTGTATAAGGTTGAGTCCTATTTGTGTT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5