BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22150.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081 1365 0.0
Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749 399 1e-110
> Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081
Length=990
Score = 1365 bits (739), Expect = 0.0
Identities = 918/1002 (92%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 1 ATGACTTTCCAAACCAATTCTTACAACGAATATCTAATTCCACCGTA-CGCGTCCTCGGA 59
||| ||||||||| |||| ||||||||||||||| ||||||||| | | || || |
Sbjct 1 ATGGCTTTCCAAATCAATCCTTACAACGAATATCCAATTCCACC-AACCTCGGCCAC--T 57
Query 60 CATGCCTCCTCGTCGTAGATGGTGGTCACGTCCAATAGTGAC-ACTACCGCCAACAAATG 118
| | ||||||| |||||||||||||||||| ||||||||||| | | |||||||| ||||
Sbjct 58 CCT-CCTCCTCCTCGTAGATGGTGGTCACGACCAATAGTGACTA-TGCCGCCAACGAATG 115
Query 119 GTCGTAGAGCCACTTGTAAGGAAACTACGGTTTGCTG-TATACCTTTTTGCGGCGCAATA 177
|||||| |||||| |||| |||||||||||||||| | || |||||| |||| |||||||
Sbjct 116 GTCGTAAAGCCACATGTATGGAAACTACGGTTTGC-GTTACACCTTTCTGCGCCGCAATA 174
Query 178 TTCACCATCATCGCCGTAATG-GTATATCTCTTTCACTTCGTCGACAATGCTCAATGTGA 236
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||
Sbjct 175 TTCACCATCATCGCCGT-ATGTGTATATCTCTTTCACTTCGTCGACAATGCTCACTGCGA 233
Query 237 CGCCAAATTCGCCATCCAATCCATCGCCGTCTCT-C--CCTCAGACACTTGGCACGTTGA 293
||||||||||| |||||||||||||||||||||| | |||| | ||| |||||||||||
Sbjct 234 CGCCAAATTCGTCATCCAATCCATCGCCGTCTCTCCATCCTCCGCCACATGGCACGTTGA 293
Query 294 TTTTCTCGTCAAAAACCCTAGCCCTAGGTTTTCTATCTACTACGAAGGCGATGAGACTGA 353
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 294 TTTTCTCGTCAAAAACCCTAGCCCTAGGTTTGCTATCTACTACAAAGGCGATGAAACTGA 353
Query 354 AGTGAGTCTCGGTAC-CTTAAGCGCTGCCGTTTTGAATACTTCTCATGAACGTAAGTCGC 412
|||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 354 CGTGAGTCTCGGT-CTCTTAAGCGCTGCCGTTTTAAATACTTCTCACGAACGTAAGTCTC 412
Query 413 CAAGTCACACGGCTTTCTCAGTGGATTTCGTTGCGGAGGGTAATCCAAATGACGTCGTTT 472
||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 413 CAAGTCACACGGCTTTCTCAGTGGATTTCCTTGCGGAGGGTAATCCAAATGATGCCGTTT 472
Query 473 CCGAACAATTAGATGTCAAATTAAGGGGTACGCATAAGAGTTACGGAGAAAACTATGATA 532
|||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||
Sbjct 473 CCGAACAATTAGATATCAAATTAAGGGCTAAGCATAAGAGTTACGGAGACGACTATGATA 532
Query 533 ACGCTGGACATATTGATCTTTTTACCAATTCCGTCTCCGTCTCAAATGCAAACGCAAACG 592
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 533 ACGCTGGACATATTGATCTTTTTGCCAATTCCGTCTCCGTCTCAAACGCAAACGCAAACG 592
Query 593 TTTCAGCCGCTGATTGGACGATTGGTTTCGTTGCGAGGAGTCCAGTCACCGGCTGTGAAG 652
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTCGGCCGCTGATTGGACGATCGGTTTCGTTGCGAGGAGTCCAGTCACCGGCTGTGAAG 652
Query 653 TCTCTATTCATACACTCAATTCGCGTTTACTCCGAGGTAGTGAAGTTATCTCCAAATCAT 712
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 653 TCTCTATTCATACACTCAATTCGCGTTTACTCCGTGGCAGCGAAGTTATCTCCAAATCAT 712
Query 713 CATCGTCCCCCTCGTCGGGTTATTTCGTCACCGGAAACAAAACAGACGTCGTTTTCGAGA 772
| || ||| | || |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 713 CGTC-TCCGTC-CG-CGGGTTATTTCGTCACCGGAGACAAAACAGAAGTCGTTTTCGAGA 769
Query 773 AGGTGGTTATGCCGAAAGTTATTGGCGACGTTATTTGGAATGCTCGGGTTGAGATTATGT 832
||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||
Sbjct 770 AGGTGGTTATGCCGAAAGTTATTGGCGACGTGATTTGGGATTCTCGAGTTGAGATTATGT 829
Query 833 TTGCGATGAATACAGATGTTAGATATTTAAATGGTTTTTTGATGGCGGCTTGTCCT-CGT 891
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 830 TTGCGATGAATACAAATGCTAGATATTTAAATGGTTTTTTGATGGCGGCTTGTCCTGC-T 888
Query 892 ATTCCGGTGAAATTCACGACGGATCAGGCGGGGAAGGTCACGGGATCGTTGCTTGGAAAT 951
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 889 ATTCCGGTGAAATTTACGACGGATCAGGCGGGGAAGGTCATGGGATCGTTGCTTGGAAAT 948
Query 952 GTGAAACGGTGTGATTATATATTCCAGAACCATTTGGCTTAA 993
||||||||||||||||||||||||||||| || |||||||||
Sbjct 949 GTGAAACGGTGTGATTATATATTCCAGAAACAATTGGCTTAA 990
> Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749
Length=1065
Score = 399 bits (216), Expect = 1e-110
Identities = 417/512 (81%), Gaps = 21/512 (4%)
Strand=Plus/Plus
Query 50 CGTCCTCGGACA-TGCCTCCTCGTCGTAGATGGTGGTCACGTCCAATAGTGACACTACCG 108
|||||||||||| | ||||||| |||| ||||||||||||| ||||||||||| | |||
Sbjct 8 CGTCCTCGGACACT-CCTCCTCCTCGTGGATGGTGGTCACGACCAATAGTGACTTTGCCG 66
Query 109 CCAAC-AAATGGTCGTAGA-GCCACTTGTAAGGAAAC-T-A-CGGTTTGCTGTATACCTT 163
| || ||| |||| || |||||||| | || || | | || ||| | || ||| |
Sbjct 67 GC-ACTGCATGATCGT-GAGGCCACTTGCACGG--ACTTCACCGCTTT-TTTTACACCCT 121
Query 164 TTTGCGGCGCAATATTCACCATCATCGCCGTAATGGTATATCTCTTTCACTTCGTCGACA 223
|||||||| ||||||||| ||||||||||| | || | | || |||| || |||| |
Sbjct 122 GTTGCGGCGGTATATTCACCGTCATCGCCGTACTCGTTTTTATCACTCACCTCATCGATA 181
Query 224 ATGCTCAATGTGACGCCAAATTCGCCATCCAATCCATCGCCGTCTCT-C--CCTCAGACA 280
|| |||| || |||||||||||| ||||||||||||||||||| ||| | |||| | ||
Sbjct 182 ATACTCACTGCGACGCCAAATTCTCCATCCAATCCATCGCCGTATCTCCATCCTCTGCCA 241
Query 281 CTTGGCACGTTGATTTTCTCGTCAAAAACCCTAGCCCTAGGTTTTCTATCTACTACGAAG 340
| ||||||||||||||||| |||||||||||||||||||| | | |||||||||||| ||
Sbjct 242 CATGGCACGTTGATTTTCTTGTCAAAAACCCTAGCCCTAGATATACTATCTACTACGGAG 301
Query 341 GCGATGAGACTGAAGTGAGTCTCGGTACCTTAAGCGCTGCCGTTTTGAATACTTCTCATG 400
||||||| || | | ||| |||||| |||||| |||||||||||| ||| ||||||| |
Sbjct 302 GCGATGAAACCGCGGCGAGGCTCGGTCCCTTAAACGCTGCCGTTTTAAATGCTTCTCACG 361
Query 401 AACGTAAGTCGCCAAGTCACACGGCTTTCTCAGTGGATTTCGTTGCGGAGGGTAATCCAA 460
|||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 362 AACGTAAGTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCGCTGCCGAGGGTAATCCAA 421
Query 461 ATGACGTCGTTTCCGAACAATTAGATGTCAAATTAAGGGGTACGCATAA-GAGTTACGGA 519
| ||| ||||| ||||||||||| ||||||| || | || || ||| ||||||||||
Sbjct 422 ACAACGAATTTTCCAAACAATTAGATATCAAATTGAGCGCTAAGC-TAACGAGTTACGGA 480
Query 520 GAAAACT-ATGATA-ACGCTGGACATATTGAT 549
||| | | || || | ||||||||| |||||
Sbjct 481 GAAGA-TGATCCTAGA-GCTGGACATGTTGAT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5