BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22160.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894086 jgi|Araly1|894086|Al_scaffold_0006_2082 579 2e-164
Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749 564 5e-160
Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081 453 1e-126
> Ahg894086 jgi|Araly1|894086|Al_scaffold_0006_2082
Length=630
Score = 579 bits (313), Expect = 2e-164
Identities = 500/585 (85%), Gaps = 33/585 (6%)
Strand=Plus/Plus
Query 26 ctcctcctcctcGT-GTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAA-GTAA 83
|||||||||||||| | | ||||||||||||||||||||||||| | ||| || | |
Sbjct 62 CTCCTCCTCCTCGTCG-TAGATGGTGGTCACGACCAATAGTGACTATACCGCCAACG-CA 119
Query 84 TGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCT-TACACCCTGTTGCGCCGGCC 142
|| ||||||| ||||||| | ||||||||| ||||| || |||||| ||||| ||||| |
Sbjct 120 TGTTCGTGAAGCCACTTGTATGGAAACTACGGTTTG-CTGTACACCTTGTTGGGCCGG-C 177
Query 143 TT-TTCACCATCGTCGCTGTATATTTATTGATCTTTCACGTCGTCAATAATGCTCACTGC 201
|| ||||||||| |||| || ||||||||| ||||||||||| || ||||||||| ||||
Sbjct 178 TTATTCACCATCCTCGCCGTTTATTTATTGCTCTTTCACGTCATCGATAATGCTCGCTGC 237
Query 202 CACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACGTG 261
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 238 CAAGCCAAATTCTCCATCCAATCCATCGCTGTCTCTCCCTCCTCTGCCACGTGGCAC-TT 296
Query 262 GATTTCCTCGTCAAAAACCCTAGCTCCAGGTACTCTATCTACTACGGACCCGATGAAACT 321
||||||||||||||||| || || | | | || | | | |||||||||||
Sbjct 297 GATTTCCTCGTCAAAAA-CC---CT--A-G----C--TC--C-A--G--CCGATGAAACT 336
Query 322 GCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT 381
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACCGTGAGTCTCGGTCCTTTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT 396
Query 382 CGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGTCGTT 441
|||||||||||||| ||||||||||||||| ||||||||||||| || ||||| ||||||
Sbjct 397 CGAAGTCACACGGCCTTCTCAGTGGATTTCGTTGCCGAGGGTAATCCAAACGGAGTCGTT 456
Query 442 TTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATTTACGGAAATGTCTTTGGT 501
||| ||||||||||| ||||||||||| ||| |||||| ||||| || ||||||||| |
Sbjct 457 TTCGAAGAATTATATATCAAATTAAAGGCGACTCATAAGGTTTACAGATATGTCTTTGAT 516
Query 502 TATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAGCTATGAGAACGTTGAG 561
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 517 AACGCTGGACATATTGATATCAGGTGTCATAATCTAACCCGAAGCTATGAGAACGTTGAG 576
Query 562 AAGATTCATTG-CTACTCTTCTTACACAGA-TATGAAGGCTTTGA 604
| |||||| || | |||||||||||||| | | || || ||||||
Sbjct 577 AGGATTCAATGTC-ACTCTTCTTACACAAAGT-TGGAGACTTTGA 619
> Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749
Length=1065
Score = 564 bits (305), Expect = 5e-160
Identities = 806/1037 (78%), Gaps = 78/1037 (8%)
Strand=Plus/Plus
Query 26 ctcctcctcctcGTGTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAAGT-AAT 84
|||||||||||| | ||||||||||||||||||||||||||| ||||| | | ||
Sbjct 20 CTCCTCCTCCTC--G-TGGATGGTGGTCACGACCAATAGTGACTTTGCCG-GCACTGCAT 75
Query 85 GATCGTGAACCCACTTGCAAGGAAAC-T-ACTG-TTTGCCTTACACCCTGTTGCGCCGGC 141
|||||||| ||||||||| || || | || | ||| ||||||||||||||| |||
Sbjct 76 GATCGTGAGGCCACTTGCACGG--ACTTCACCGCTTT-TTTTACACCCTGTTGCGGCGGT 132
Query 142 CTTTTCACCATCGTCGCTGTA-T-ATTTATTGATCTTTCACGTCGTCAATAATGCTCACT 199
| |||||| || |||| ||| | ||| || ||| |||| || || ||||| ||||||
Sbjct 133 ATATTCACCGTCATCGCCGTACTCGTTT-TT-ATCACTCACCTCATCGATAATACTCACT 190
Query 200 GCCACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACG 259
|| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 191 GCGACGCCAAATTCTCCATCCAATCCATCGCCGTATCTCCATCCTCTGCCACATGGCACG 250
Query 260 TGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTACTACGGACCCGATGA 317
| ||||| || ||||||||||||||| || || || | |||||||||||||| ||||||
Sbjct 251 TTGATTTTCTTGTCAAAAACCCTAGC-CCTAGATA-TACTATCTACTACGGAGGCGATGA 308
Query 318 AACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAA 377
||| || | ||| || |||||| ||||||||||||||||| || ||| ||||||||||||
Sbjct 309 AACCGCGGCGAGGCTCGGTCCCTTAAACGCTGCCGTTTTAAATGCTTCTCACGAACGTAA 368
Query 378 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGT 437
|||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||
Sbjct 369 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCGCTGCCGAGGGTAATCCAAACAACGA 428
Query 438 CGTTTTC-AAAGAATTATATGTCAAATTAAAGACGA-AA-CATAA-GATTTACGGA-AA- 491
||||| ||| ||||| || ||||||| | | || || | ||| || ||||||| ||
Sbjct 429 A-TTTTCCAAACAATTAGATATCAAATTGA-G-CGCTAAGC-TAACGAGTTACGGAGAAG 484
Query 492 -TG-TCTTTGGTTATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAG-CTA 548
|| || | | | ||||||||| ||||| |||||||| | ||||| ||||||| | |
Sbjct 485 ATGATCCTAG---A-GCTGGACATGTTGATGTAAGGTGTTATAATCTGACCCGAAAAC-A 539
Query 549 TGAGAACGTTGAGAAGATTCATTGCTACTCTTCTTACACAGATAT-GA-AG--GC--TTT 602
||||||||| ||||||||||| || ||| || ||| |||| | || | || || |||
Sbjct 540 TGAGAACGTCGAGAAGATTCAATGTTACACTACTTTCACAAA-ATTGCCAGAAGCACTTT 598
Query 603 GACTGGAAATTCTGTCTCCGTCTCAAACGC-AA---A----C----GTTTCAACCGCTGA 650
|| ||||| |||||||||||||||| || | | |||||| ||||||
Sbjct 599 T--TGCCAATTCCATCTCCGTCTCAAACGCGAATGCAAATGCAAATGTTTCAGTCGCTGA 656
Query 651 TTGGACGATCGGTTTCGTTGCGAAGA-GTCCAAAT-ACCGGCTGTAAAATCTCTCTACAT 708
||||||||||||||| | || |||| |||||| | || ||| ||||| ||| | ||
Sbjct 657 TTGGACGATCGGTTTTGCCGC-AAGAAGTCCAA-TCACTAACTGCAAAATGTCTTTTCAA 714
Query 709 CCACTCAA-TGCGCGTTTACTCCGAGGCGGTGAAGTTATCTCCAAATCAGCATCT--TAC 765
||||||| | | ||||| ||||| |||| ||||||| ||||| ||| | || ||
Sbjct 715 ACACTCAAGT-CTCGTTTGCTCCGTGGCGACCAAGTTATTTCCAATTCATTACCTCCTA- 772
Query 766 TCGTCTGATTATTTCGTA---TCCG-G-CCG-AGACAAACCAGATGTCCTTTTCGAGAAG 819
| ||| || ||| ||| | | | | ||| ||||| || ||||| |||||||||||
Sbjct 773 T-GTCCGAATATATCGGACAATTTGTGGCCGGAGACATGGCAAATGTCGTTTTCGAGAAG 831
Query 820 GTGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCATCTTCGAGTTGAGGTTTTGTTT 879
||||| | ||| |||||||||||||| ||||||||| || |||| ||||||||| || |
Sbjct 832 GTGGTGATGCCAGAAGTTATTGGCGATGTTATTTGGGATTTTCGGGTTGAGGTTAAGTAT 891
Query 880 GCAATGGACAC-CGATGTTTCATGTTTTAACGGTTTTT-TAATCGCCGTTTGTCCCGATA 937
|||||| ||| | ||| | | | | | || ||||| |||| || || ||||||||||
Sbjct 892 GCAATGCACATAC-ATGCTGGA-GATGTGACCGTTTTAGTAATGGCGGTCTGTCCCGATA 949
Query 938 TTGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGGATCGTTGCTTGGACATA 997
|| |||| || |||||||||||| |||| || || ||||||||||||||||||| |||
Sbjct 950 TTCCGGTTAAATTCACGACGGATTCGGCCGGAAATATGATGGGATCGTTGCTTGGAAATA 1009
Query 998 TGAGATGGTGCGACTAT 1014
||||| |||| || |||
Sbjct 1010 TGAGACGGTGTGATTAT 1026
> Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081
Length=990
Score = 453 bits (245), Expect = 1e-126
Identities = 429/516 (83%), Gaps = 20/516 (4%)
Strand=Plus/Plus
Query 11 CCTCGGCCATtcctcctcctcctcctcGTGTTGGATGGTGGTCACGACCAATAGTGACCG 70
||||||||| ||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 47 CCTCGGCCA---CTCCTCCTCCTCCTC--G-TAGATGGTGGTCACGACCAATAGTGACTA 100
Query 71 TGCCGTTAA-GTAATGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCTTACACCC 129
||||| || | |||| |||| || |||| || | ||||||||| |||||| ||||| ||
Sbjct 101 TGCCGCCAACG-AATGGTCGTAAAGCCACATGTATGGAAACTACGGTTTGCGTTACA-CC 158
Query 130 TGT-TGCGCCGGC-CTTTTCACCATCGTCGCTGTATATTTAT-TGATCTTTCACGTCGTC 186
| | |||||| || | ||||||||| |||| |||| | ||| | |||||||| |||||
Sbjct 159 TTTCTGCGCC-GCAATATTCACCATCATCGCCGTATGTGTATAT-CTCTTTCACTTCGTC 216
Query 187 AATAATGCTCACTGCCACGCCAAATTC-TCCATCCAATCCATCGCCGTCTCTCCCTCCTC 245
| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 217 GACAATGCTCACTGCGACGCCAAATTCGT-CATCCAATCCATCGCCGTCTCTCCATCCTC 275
Query 246 CGCCACGTGGCACGTGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTAC 303
|||||| |||||||| ||||| |||||||||||||||||| || |||| | ||||||||
Sbjct 276 CGCCACATGGCACGTTGATTTTCTCGTCAAAAACCCTAGC-CCTAGGT-TTGCTATCTAC 333
Query 304 TACGGACCCGATGAAACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACT 363
||| | ||||||||||| ||||||||| |||| | ||| ||||||||||||| |||||
Sbjct 334 TACAAAGGCGATGAAACTGACGTGAGTCTCGGTCTCTTAAGCGCTGCCGTTTTAAATACT 393
Query 364 TTTCACGAACGTAAGTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGT 423
| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 394 TCTCACGAACGTAAGTCTCCAAGTCACACGGCTTTCTCAGTGGATTTCCTTGCGGAGGGT 453
Query 424 AACCCTAACGGCGTCGTTTTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATT 483
|| || || | | ||||| | || ||||| || ||||||||| | | || ||||||| |
Sbjct 454 AATCCAAATGATGCCGTTTCCGAACAATTAGATATCAAATTAAGGGCTAAGCATAAGAGT 513
Query 484 TACGGAAATGTCTTTGGTTATGCTGGACATATTGAT 519
|||||| | | || || | | |||||||||||||||
Sbjct 514 TACGGAGACGACTATGATAACGCTGGACATATTGAT 549
Score = 335 bits (181), Expect = 4e-91
Identities = 340/415 (82%), Gaps = 17/415 (4%)
Strand=Plus/Plus
Query 626 CAAACGCAAACGTTTCAACCGCTGATTGGACGATCGGTTTCGTTGCGAAGAGTCCAAAT- 684
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 581 CAAACGCAAACGTTTCGGCCGCTGATTGGACGATCGGTTTCGTTGCGAGGAGTCCAG-TC 639
Query 685 ACCGGCTGTAAAATCTCTCTACATCCACTCAATGCGCGTTTACTCCGAGGCGGTGAAGTT 744
||||||||| || ||||| | ||| |||||||| ||||||||||||| ||| | ||||||
Sbjct 640 ACCGGCTGTGAAGTCTCTATTCATACACTCAATTCGCGTTTACTCCGTGGCAGCGAAGTT 699
Query 745 ATCTCCAAATCAGCATCTTAC-TC-GTCTGATTATTTCGT-ATCCGGCCGAGACAAACCA 801
|||||||||||| | ||| | || | | | ||||||||| | |||| ||||||| ||
Sbjct 700 ATCTCCAAATCATCGTCTC-CGTCCG-CGGGTTATTTCGTCA-CCGG---AGACAAAACA 753
Query 802 GATGTCCTTTTCGAGAAGGTGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCAT-CT 860
|| ||| |||||||||||||||||| |||| |||||||||||||||| |||||| || ||
Sbjct 754 GAAGTCGTTTTCGAGAAGGTGGTTATGCCGAAAGTTATTGGCGACGTGATTTGGGATTCT 813
Query 861 TCGAGTTGAGGTTTTGTTTGCAATGGACACCGATGTTTCATGTTTTAACGGTTTTTTAAT 920
||||||||| || ||||||| ||| | || ||| | || ||| || |||||||| ||
Sbjct 814 -CGAGTTGAGATTATGTTTGCGATGAATACAAATGCTAGATATTTAAATGGTTTTTTGAT 872
Query 921 CGCCGTTTGTCCCGATATTGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGG 980
|| | |||||| | |||| ||||||| || |||||||||| ||| ||||||| |||||
Sbjct 873 GGCGGCTTGTCCTGCTATTCCGGTGAAATTTACGACGGATCAGGCGGGGAAGGTCATGGG 932
Query 981 ATCGTTGCTTGGACATATGAGATGGTGCGACTATGA-ATTCCGGGAAA-AATTGG 1033
||||||||||||| || ||| | |||| || ||| | ||||| | ||| ||||||
Sbjct 933 ATCGTTGCTTGGAAATGTGAAACGGTGTGATTAT-ATATTCCAG-AAACAATTGG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5