BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22160.1 Length=1062 Score E Sequences producing significant alignments: (Bits) Value Ahg894086 jgi|Araly1|894086|Al_scaffold_0006_2082 579 2e-164 Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749 564 5e-160 Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081 453 1e-126 > Ahg894086 jgi|Araly1|894086|Al_scaffold_0006_2082 Length=630 Score = 579 bits (313), Expect = 2e-164 Identities = 500/585 (85%), Gaps = 33/585 (6%) Strand=Plus/Plus Query 26 ctcctcctcctcGT-GTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAA-GTAA 83 |||||||||||||| | | ||||||||||||||||||||||||| | ||| || | | Sbjct 62 CTCCTCCTCCTCGTCG-TAGATGGTGGTCACGACCAATAGTGACTATACCGCCAACG-CA 119 Query 84 TGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCT-TACACCCTGTTGCGCCGGCC 142 || ||||||| ||||||| | ||||||||| ||||| || |||||| ||||| ||||| | Sbjct 120 TGTTCGTGAAGCCACTTGTATGGAAACTACGGTTTG-CTGTACACCTTGTTGGGCCGG-C 177 Query 143 TT-TTCACCATCGTCGCTGTATATTTATTGATCTTTCACGTCGTCAATAATGCTCACTGC 201 || ||||||||| |||| || ||||||||| ||||||||||| || ||||||||| |||| Sbjct 178 TTATTCACCATCCTCGCCGTTTATTTATTGCTCTTTCACGTCATCGATAATGCTCGCTGC 237 Query 202 CACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACGTG 261 || |||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct 238 CAAGCCAAATTCTCCATCCAATCCATCGCTGTCTCTCCCTCCTCTGCCACGTGGCAC-TT 296 Query 262 GATTTCCTCGTCAAAAACCCTAGCTCCAGGTACTCTATCTACTACGGACCCGATGAAACT 321 ||||||||||||||||| || || | | | || | | | ||||||||||| Sbjct 297 GATTTCCTCGTCAAAAA-CC---CT--A-G----C--TC--C-A--G--CCGATGAAACT 336 Query 322 GCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT 381 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 337 ACCGTGAGTCTCGGTCCTTTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT 396 Query 382 CGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGTCGTT 441 |||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |||||| Sbjct 397 CGAAGTCACACGGCCTTCTCAGTGGATTTCGTTGCCGAGGGTAATCCAAACGGAGTCGTT 456 Query 442 TTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATTTACGGAAATGTCTTTGGT 501 ||| ||||||||||| ||||||||||| ||| |||||| ||||| || ||||||||| | Sbjct 457 TTCGAAGAATTATATATCAAATTAAAGGCGACTCATAAGGTTTACAGATATGTCTTTGAT 516 Query 502 TATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAGCTATGAGAACGTTGAG 561 | ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 517 AACGCTGGACATATTGATATCAGGTGTCATAATCTAACCCGAAGCTATGAGAACGTTGAG 576 Query 562 AAGATTCATTG-CTACTCTTCTTACACAGA-TATGAAGGCTTTGA 604 | |||||| || | |||||||||||||| | | || || |||||| Sbjct 577 AGGATTCAATGTC-ACTCTTCTTACACAAAGT-TGGAGACTTTGA 619 > Ahg326529 jgi|Araly1|326529|fgenesh1_pm.C_scaffold_6001749 Length=1065 Score = 564 bits (305), Expect = 5e-160 Identities = 806/1037 (78%), Gaps = 78/1037 (8%) Strand=Plus/Plus Query 26 ctcctcctcctcGTGTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAAGT-AAT 84 |||||||||||| | ||||||||||||||||||||||||||| ||||| | | || Sbjct 20 CTCCTCCTCCTC--G-TGGATGGTGGTCACGACCAATAGTGACTTTGCCG-GCACTGCAT 75 Query 85 GATCGTGAACCCACTTGCAAGGAAAC-T-ACTG-TTTGCCTTACACCCTGTTGCGCCGGC 141 |||||||| ||||||||| || || | || | ||| ||||||||||||||| ||| Sbjct 76 GATCGTGAGGCCACTTGCACGG--ACTTCACCGCTTT-TTTTACACCCTGTTGCGGCGGT 132 Query 142 CTTTTCACCATCGTCGCTGTA-T-ATTTATTGATCTTTCACGTCGTCAATAATGCTCACT 199 | |||||| || |||| ||| | ||| || ||| |||| || || ||||| |||||| Sbjct 133 ATATTCACCGTCATCGCCGTACTCGTTT-TT-ATCACTCACCTCATCGATAATACTCACT 190 Query 200 GCCACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACG 259 || ||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 191 GCGACGCCAAATTCTCCATCCAATCCATCGCCGTATCTCCATCCTCTGCCACATGGCACG 250 Query 260 TGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTACTACGGACCCGATGA 317 | ||||| || ||||||||||||||| || || || | |||||||||||||| |||||| Sbjct 251 TTGATTTTCTTGTCAAAAACCCTAGC-CCTAGATA-TACTATCTACTACGGAGGCGATGA 308 Query 318 AACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAA 377 ||| || | ||| || |||||| ||||||||||||||||| || ||| |||||||||||| Sbjct 309 AACCGCGGCGAGGCTCGGTCCCTTAAACGCTGCCGTTTTAAATGCTTCTCACGAACGTAA 368 Query 378 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGT 437 |||||||||||||||||||||||||||||||||| |||||||||||| || ||| || Sbjct 369 GTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCGCTGCCGAGGGTAATCCAAACAACGA 428 Query 438 CGTTTTC-AAAGAATTATATGTCAAATTAAAGACGA-AA-CATAA-GATTTACGGA-AA- 491 ||||| ||| ||||| || ||||||| | | || || | ||| || ||||||| || Sbjct 429 A-TTTTCCAAACAATTAGATATCAAATTGA-G-CGCTAAGC-TAACGAGTTACGGAGAAG 484 Query 492 -TG-TCTTTGGTTATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAG-CTA 548 || || | | | ||||||||| ||||| |||||||| | ||||| ||||||| | | Sbjct 485 ATGATCCTAG---A-GCTGGACATGTTGATGTAAGGTGTTATAATCTGACCCGAAAAC-A 539 Query 549 TGAGAACGTTGAGAAGATTCATTGCTACTCTTCTTACACAGATAT-GA-AG--GC--TTT 602 ||||||||| ||||||||||| || ||| || ||| |||| | || | || || ||| Sbjct 540 TGAGAACGTCGAGAAGATTCAATGTTACACTACTTTCACAAA-ATTGCCAGAAGCACTTT 598 Query 603 GACTGGAAATTCTGTCTCCGTCTCAAACGC-AA---A----C----GTTTCAACCGCTGA 650 || ||||| |||||||||||||||| || | | |||||| |||||| Sbjct 599 T--TGCCAATTCCATCTCCGTCTCAAACGCGAATGCAAATGCAAATGTTTCAGTCGCTGA 656 Query 651 TTGGACGATCGGTTTCGTTGCGAAGA-GTCCAAAT-ACCGGCTGTAAAATCTCTCTACAT 708 ||||||||||||||| | || |||| |||||| | || ||| ||||| ||| | || Sbjct 657 TTGGACGATCGGTTTTGCCGC-AAGAAGTCCAA-TCACTAACTGCAAAATGTCTTTTCAA 714 Query 709 CCACTCAA-TGCGCGTTTACTCCGAGGCGGTGAAGTTATCTCCAAATCAGCATCT--TAC 765 ||||||| | | ||||| ||||| |||| ||||||| ||||| ||| | || || Sbjct 715 ACACTCAAGT-CTCGTTTGCTCCGTGGCGACCAAGTTATTTCCAATTCATTACCTCCTA- 772 Query 766 TCGTCTGATTATTTCGTA---TCCG-G-CCG-AGACAAACCAGATGTCCTTTTCGAGAAG 819 | ||| || ||| ||| | | | | ||| ||||| || ||||| ||||||||||| Sbjct 773 T-GTCCGAATATATCGGACAATTTGTGGCCGGAGACATGGCAAATGTCGTTTTCGAGAAG 831 Query 820 GTGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCATCTTCGAGTTGAGGTTTTGTTT 879 ||||| | ||| |||||||||||||| ||||||||| || |||| ||||||||| || | Sbjct 832 GTGGTGATGCCAGAAGTTATTGGCGATGTTATTTGGGATTTTCGGGTTGAGGTTAAGTAT 891 Query 880 GCAATGGACAC-CGATGTTTCATGTTTTAACGGTTTTT-TAATCGCCGTTTGTCCCGATA 937 |||||| ||| | ||| | | | | | || ||||| |||| || || |||||||||| Sbjct 892 GCAATGCACATAC-ATGCTGGA-GATGTGACCGTTTTAGTAATGGCGGTCTGTCCCGATA 949 Query 938 TTGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGGATCGTTGCTTGGACATA 997 || |||| || |||||||||||| |||| || || ||||||||||||||||||| ||| Sbjct 950 TTCCGGTTAAATTCACGACGGATTCGGCCGGAAATATGATGGGATCGTTGCTTGGAAATA 1009 Query 998 TGAGATGGTGCGACTAT 1014 ||||| |||| || ||| Sbjct 1010 TGAGACGGTGTGATTAT 1026 > Ahg894085 jgi|Araly1|894085|Al_scaffold_0006_2081 Length=990 Score = 453 bits (245), Expect = 1e-126 Identities = 429/516 (83%), Gaps = 20/516 (4%) Strand=Plus/Plus Query 11 CCTCGGCCATtcctcctcctcctcctcGTGTTGGATGGTGGTCACGACCAATAGTGACCG 70 ||||||||| ||||||||||||||| | | ||||||||||||||||||||||||| Sbjct 47 CCTCGGCCA---CTCCTCCTCCTCCTC--G-TAGATGGTGGTCACGACCAATAGTGACTA 100 Query 71 TGCCGTTAA-GTAATGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCTTACACCC 129 ||||| || | |||| |||| || |||| || | ||||||||| |||||| ||||| || Sbjct 101 TGCCGCCAACG-AATGGTCGTAAAGCCACATGTATGGAAACTACGGTTTGCGTTACA-CC 158 Query 130 TGT-TGCGCCGGC-CTTTTCACCATCGTCGCTGTATATTTAT-TGATCTTTCACGTCGTC 186 | | |||||| || | ||||||||| |||| |||| | ||| | |||||||| ||||| Sbjct 159 TTTCTGCGCC-GCAATATTCACCATCATCGCCGTATGTGTATAT-CTCTTTCACTTCGTC 216 Query 187 AATAATGCTCACTGCCACGCCAAATTC-TCCATCCAATCCATCGCCGTCTCTCCCTCCTC 245 | |||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||| Sbjct 217 GACAATGCTCACTGCGACGCCAAATTCGT-CATCCAATCCATCGCCGTCTCTCCATCCTC 275 Query 246 CGCCACGTGGCACGTGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTAC 303 |||||| |||||||| ||||| |||||||||||||||||| || |||| | |||||||| Sbjct 276 CGCCACATGGCACGTTGATTTTCTCGTCAAAAACCCTAGC-CCTAGGT-TTGCTATCTAC 333 Query 304 TACGGACCCGATGAAACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACT 363 ||| | ||||||||||| ||||||||| |||| | ||| ||||||||||||| ||||| Sbjct 334 TACAAAGGCGATGAAACTGACGTGAGTCTCGGTCTCTTAAGCGCTGCCGTTTTAAATACT 393 Query 364 TTTCACGAACGTAAGTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGT 423 | ||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| Sbjct 394 TCTCACGAACGTAAGTCTCCAAGTCACACGGCTTTCTCAGTGGATTTCCTTGCGGAGGGT 453 Query 424 AACCCTAACGGCGTCGTTTTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATT 483 || || || | | ||||| | || ||||| || ||||||||| | | || ||||||| | Sbjct 454 AATCCAAATGATGCCGTTTCCGAACAATTAGATATCAAATTAAGGGCTAAGCATAAGAGT 513 Query 484 TACGGAAATGTCTTTGGTTATGCTGGACATATTGAT 519 |||||| | | || || | | ||||||||||||||| Sbjct 514 TACGGAGACGACTATGATAACGCTGGACATATTGAT 549 Score = 335 bits (181), Expect = 4e-91 Identities = 340/415 (82%), Gaps = 17/415 (4%) Strand=Plus/Plus Query 626 CAAACGCAAACGTTTCAACCGCTGATTGGACGATCGGTTTCGTTGCGAAGAGTCCAAAT- 684 |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 581 CAAACGCAAACGTTTCGGCCGCTGATTGGACGATCGGTTTCGTTGCGAGGAGTCCAG-TC 639 Query 685 ACCGGCTGTAAAATCTCTCTACATCCACTCAATGCGCGTTTACTCCGAGGCGGTGAAGTT 744 ||||||||| || ||||| | ||| |||||||| ||||||||||||| ||| | |||||| Sbjct 640 ACCGGCTGTGAAGTCTCTATTCATACACTCAATTCGCGTTTACTCCGTGGCAGCGAAGTT 699 Query 745 ATCTCCAAATCAGCATCTTAC-TC-GTCTGATTATTTCGT-ATCCGGCCGAGACAAACCA 801 |||||||||||| | ||| | || | | | ||||||||| | |||| ||||||| || Sbjct 700 ATCTCCAAATCATCGTCTC-CGTCCG-CGGGTTATTTCGTCA-CCGG---AGACAAAACA 753 Query 802 GATGTCCTTTTCGAGAAGGTGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCAT-CT 860 || ||| |||||||||||||||||| |||| |||||||||||||||| |||||| || || Sbjct 754 GAAGTCGTTTTCGAGAAGGTGGTTATGCCGAAAGTTATTGGCGACGTGATTTGGGATTCT 813 Query 861 TCGAGTTGAGGTTTTGTTTGCAATGGACACCGATGTTTCATGTTTTAACGGTTTTTTAAT 920 ||||||||| || ||||||| ||| | || ||| | || ||| || |||||||| || Sbjct 814 -CGAGTTGAGATTATGTTTGCGATGAATACAAATGCTAGATATTTAAATGGTTTTTTGAT 872 Query 921 CGCCGTTTGTCCCGATATTGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGG 980 || | |||||| | |||| ||||||| || |||||||||| ||| ||||||| ||||| Sbjct 873 GGCGGCTTGTCCTGCTATTCCGGTGAAATTTACGACGGATCAGGCGGGGAAGGTCATGGG 932 Query 981 ATCGTTGCTTGGACATATGAGATGGTGCGACTATGA-ATTCCGGGAAA-AATTGG 1033 ||||||||||||| || ||| | |||| || ||| | ||||| | ||| |||||| Sbjct 933 ATCGTTGCTTGGAAATGTGAAACGGTGTGATTAT-ATATTCCAG-AAACAATTGG 985 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39533464929 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5