BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22180.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326528 jgi|Araly1|326528|fgenesh1_pm.C_scaffold_6001748           573    4e-163


> Ahg326528 jgi|Araly1|326528|fgenesh1_pm.C_scaffold_6001748
Length=495

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 454/518 (88%), Gaps = 31/518 (6%)
 Strand=Plus/Plus

Query  1    ATGGCAAACAGGCATCTGGAAATAGAGACCGGATTCCCAACGCCACTGTCCTCCGCCACT  60
            ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1    ATGGCAAACAGGCAGATGGAAATAGAGACCGGATTCCCAACGCCACCGTCCTCCGCCACT  60

Query  61   GATCCTCCTCCTCCATCACGGTGGTGGACACAACTACATTCATTATTCCTTCGTCGTAAC  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   GATCCTCCTCCTCCATCACGGTGGTGGACACAACTGCATTCATTATTCCTTCGTCGTAAC  120

Query  121  GAACTCACTAAAGAAGAGAAATCAGCTAT-TTCAAAACCCCATGTACAACCTTTTATGCC  179
            ||||||||||||||||||||||||||||| ||   ||    |   ||  ||| || |   
Sbjct  121  GAACTCACTAAAGAAGAGAAATCAGCTATATTTTTAA----A---AC--CCTATT-T---  167

Query  180  ACGCCAGCGTCTCC-TCGAATCCATAACCGTTTCCCCCTCCTCTTCCGCCACGTTGCACA  238
                   | ||||| ||||||||||  ||||||||||||||||||||||||||| |||| 
Sbjct  168  -------CTTCTCCGTCGAATCCATCTCCGTTTCCCCCTCCTCTTCCGCCACGTGGCACG  220

Query  239  TCGATTTTCTCGTGAAACCGAGCTCATCGTGTCCTATCCAATACAACGGAGATGACGTGT  298
            | |||||||||||||| |||||||||| |||||| ||| | |||||||||||||||||||
Sbjct  221  TTGATTTTCTCGTGAACCCGAGCTCATGGTGTCCAATCGACTACAACGGAGATGACGTGT  280

Query  299  ACGCCAAGCTAGGTTCCTTAAACGCCGCCG-G--TAATCAAAGAGTTTTCGAATTAGACT  355
            ||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||| 
Sbjct  281  ACGCCAAGCTAGGCTCCTTAAACGCCGCCGAGGGTAATCAAAGAGTTTTCGAATTAGACA  340

Query  356  TGAAACTTAGTACGATGAAGAAACAG-CTTGCGT-TAGTATATGAATATGGACATTTCGA  413
            ||||||||||  ||| ||||||| || | ||||| | | |||||||||||||||| ||||
Sbjct  341  TGAAACTTAGCGCGAAGAAGAAA-AGTCCTGCGTATGG-ATATGAATATGGACATCTCGA  398

Query  414  TATCAGGTGTCAGAATCTGACTATCGGTTATCAGAAGACTAAGTGTCATTCGTCTTACAA  473
            |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  399  TATCCGGTGTCAGAATCTGACTATTGGTTATCAGAAGACTAAGTGTCATTCGTCTTTCAA  458

Query  474  AGCGTTGGATGACC-CGATACGTAAGCTATTGAATTAG  510
            ||||||||| || | |||||| |||||||||| |||||
Sbjct  459  AGCGTTGGA-GAACACGATACCTAAGCTATTGGATTAG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5