BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22180.1 Length=510 Score E Sequences producing significant alignments: (Bits) Value Ahg326528 jgi|Araly1|326528|fgenesh1_pm.C_scaffold_6001748 573 4e-163 > Ahg326528 jgi|Araly1|326528|fgenesh1_pm.C_scaffold_6001748 Length=495 Score = 573 bits (310), Expect = 4e-163 Identities = 454/518 (88%), Gaps = 31/518 (6%) Strand=Plus/Plus Query 1 ATGGCAAACAGGCATCTGGAAATAGAGACCGGATTCCCAACGCCACTGTCCTCCGCCACT 60 |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATGGCAAACAGGCAGATGGAAATAGAGACCGGATTCCCAACGCCACCGTCCTCCGCCACT 60 Query 61 GATCCTCCTCCTCCATCACGGTGGTGGACACAACTACATTCATTATTCCTTCGTCGTAAC 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GATCCTCCTCCTCCATCACGGTGGTGGACACAACTGCATTCATTATTCCTTCGTCGTAAC 120 Query 121 GAACTCACTAAAGAAGAGAAATCAGCTAT-TTCAAAACCCCATGTACAACCTTTTATGCC 179 ||||||||||||||||||||||||||||| || || | || ||| || | Sbjct 121 GAACTCACTAAAGAAGAGAAATCAGCTATATTTTTAA----A---AC--CCTATT-T--- 167 Query 180 ACGCCAGCGTCTCC-TCGAATCCATAACCGTTTCCCCCTCCTCTTCCGCCACGTTGCACA 238 | ||||| |||||||||| ||||||||||||||||||||||||||| |||| Sbjct 168 -------CTTCTCCGTCGAATCCATCTCCGTTTCCCCCTCCTCTTCCGCCACGTGGCACG 220 Query 239 TCGATTTTCTCGTGAAACCGAGCTCATCGTGTCCTATCCAATACAACGGAGATGACGTGT 298 | |||||||||||||| |||||||||| |||||| ||| | ||||||||||||||||||| Sbjct 221 TTGATTTTCTCGTGAACCCGAGCTCATGGTGTCCAATCGACTACAACGGAGATGACGTGT 280 Query 299 ACGCCAAGCTAGGTTCCTTAAACGCCGCCG-G--TAATCAAAGAGTTTTCGAATTAGACT 355 ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 281 ACGCCAAGCTAGGCTCCTTAAACGCCGCCGAGGGTAATCAAAGAGTTTTCGAATTAGACA 340 Query 356 TGAAACTTAGTACGATGAAGAAACAG-CTTGCGT-TAGTATATGAATATGGACATTTCGA 413 |||||||||| ||| ||||||| || | ||||| | | |||||||||||||||| |||| Sbjct 341 TGAAACTTAGCGCGAAGAAGAAA-AGTCCTGCGTATGG-ATATGAATATGGACATCTCGA 398 Query 414 TATCAGGTGTCAGAATCTGACTATCGGTTATCAGAAGACTAAGTGTCATTCGTCTTACAA 473 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 399 TATCCGGTGTCAGAATCTGACTATTGGTTATCAGAAGACTAAGTGTCATTCGTCTTTCAA 458 Query 474 AGCGTTGGATGACC-CGATACGTAAGCTATTGAATTAG 510 ||||||||| || | |||||| |||||||||| ||||| Sbjct 459 AGCGTTGGA-GAACACGATACCTAAGCTATTGGATTAG 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18543616254 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5