BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22190.1

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941717 jgi|Araly1|941717|scaffold_602261.1                        128    3e-29


> Ahg941717 jgi|Araly1|941717|scaffold_602261.1
Length=475

 Score =  128 bits (69),  Expect = 3e-29
 Identities = 91/102 (89%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  47   CAACAAGGAGTCCAGCTAACAAATGTAAATTCTCTTTCCACACAATCAAATCGCGTCTCC  106
            ||||||||| ||||| ||||  ||||||| ||||| |||||||| |||||||||||||||
Sbjct  328  CAACAAGGAATCCAGGTAACGGATGTAAAGTCTCTCTCCACACAGTCAAATCGCGTCTCC  387

Query  107  TCCGCGGAGATAAGCTTATCTCCGAGTCAGCCACTCCTGATT  148
            ||||||||||||||||| | ||||||||| ||| ||||||||
Sbjct  388  TCCGCGGAGATAAGCTTCTATCCGAGTCATCCATTCCTGATT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12591344370


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5