BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22200.1 Length=633 Score E Sequences producing significant alignments: (Bits) Value Ahg489069 jgi|Araly1|489069|fgenesh2_kg.6__2203__AT5G22200.1 830 0.0 > Ahg489069 jgi|Araly1|489069|fgenesh2_kg.6__2203__AT5G22200.1 Length=627 Score = 830 bits (449), Expect = 0.0 Identities = 574/633 (91%), Gaps = 13/633 (2%) Strand=Plus/Plus Query 1 ATGACGGGGAGATACTGCGACCAACACAACGGCTATGAGGAGAGGAGGATGAGGATGATG 60 |||||||||||| ||||| |||||||| ||| |||||||||||||||||||| || | Sbjct 1 ATGACGGGGAGAGACTGCAACCAACACTACGACTATGAGGAGAGGAGGATGA-GACG--C 57 Query 61 ATGAGACGCATAGCATGGGCA-TGTCTTGGCCTAATCGTGGCGGTTGCGTTCGTGGTGTT 119 || | | || | ||| | || ||||||||||||||||||| ||||||||||||||| Sbjct 58 AT---A-GTAT-G-GGGGGGATTG-CTTGGCCTAATCGTGGCGGGTGCGTTCGTGGTGTT 110 Query 120 CTTGGTGTGGGCTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 CTTGGTGTGGGTTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 170 Query 180 TAACGACTTCAACGTTTCTCAGCCAAATTTCCTCTCTTCAAATCTCCAGGTCACTGTATC 239 ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | || Sbjct 171 TAACGACTTCAACATATCTCAGCCAAATTTCCTCTCTTCAAATCTTCAGGTCACTCTCTC 230 Query 240 TTCTCGCAATCCAAACGACAAGATCGGCATTTTTTATGATCGTCTCGACATCTACGTCAC 299 ||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| | ||| Sbjct 231 TTCTCGCAACCCAAACGACAAGATCGGAATTTTCTATGACCGTCTCGACATCTATGCCAC 290 Query 300 ATACCGGAACCAAGAGGTAACGTTGGCGAGGCTCTTGCCGTCAACGTATCAAGGACATCT 359 |||| | ||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| Sbjct 291 ATACAGAAACCAAGAGGTGACGGTGGCGAGGCTATTGCCGTCGACGTATCAAGGACATCT 350 Query 360 GGAAGTAACGGTGTGGTCACCATTTCTGATTGGCTCCGCCGTGCCGGTGGCTCCTTACCT 419 ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 351 GGAAGCGACGGTGTGGTCACCGTTTCTGATTGGCTCCAACGTGCCGGTGGCTCCTTACCT 410 Query 420 ATCTTCGGCATTGAACGAAGACTTATTCGCCGGGTTGGTGCTTCTCAACATCAAAATAGA 479 ||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||| ||||| Sbjct 411 GTCTCCGGCGTTGAACGAAGATTTAATCGCCGGGATGGTGCTTCTCAACATCAAGATAGA 470 Query 480 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCAGTTATCGCCTCCACGTTAA 539 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 471 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCGGTTATCACCTCCACGTTAA 530 Query 540 CTGTCCTGCGTTCATTACCGTCACCGGAAAGTTAACCGGCA-CCGGTCCGGCGATCAAGT 598 |||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 531 CTGTCCGGCGTTCATTACCGTCACCGGAAAGTTAGTCGG-AGCCGGTCCGGCGATCAAGT 589 Query 599 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 631 ||||||||||||||||||||||||||||||||| Sbjct 590 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23178733536 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5