BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22200.1
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489069 jgi|Araly1|489069|fgenesh2_kg.6__2203__AT5G22200.1 830 0.0
> Ahg489069 jgi|Araly1|489069|fgenesh2_kg.6__2203__AT5G22200.1
Length=627
Score = 830 bits (449), Expect = 0.0
Identities = 574/633 (91%), Gaps = 13/633 (2%)
Strand=Plus/Plus
Query 1 ATGACGGGGAGATACTGCGACCAACACAACGGCTATGAGGAGAGGAGGATGAGGATGATG 60
|||||||||||| ||||| |||||||| ||| |||||||||||||||||||| || |
Sbjct 1 ATGACGGGGAGAGACTGCAACCAACACTACGACTATGAGGAGAGGAGGATGA-GACG--C 57
Query 61 ATGAGACGCATAGCATGGGCA-TGTCTTGGCCTAATCGTGGCGGTTGCGTTCGTGGTGTT 119
|| | | || | ||| | || ||||||||||||||||||| |||||||||||||||
Sbjct 58 AT---A-GTAT-G-GGGGGGATTG-CTTGGCCTAATCGTGGCGGGTGCGTTCGTGGTGTT 110
Query 120 CTTGGTGTGGGCTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CTTGGTGTGGGTTATACTTCACCCGCACGGACCGCGTTTTGTCCTCCAAGACGTAACCAT 170
Query 180 TAACGACTTCAACGTTTCTCAGCCAAATTTCCTCTCTTCAAATCTCCAGGTCACTGTATC 239
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 171 TAACGACTTCAACATATCTCAGCCAAATTTCCTCTCTTCAAATCTTCAGGTCACTCTCTC 230
Query 240 TTCTCGCAATCCAAACGACAAGATCGGCATTTTTTATGATCGTCTCGACATCTACGTCAC 299
||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| | |||
Sbjct 231 TTCTCGCAACCCAAACGACAAGATCGGAATTTTCTATGACCGTCTCGACATCTATGCCAC 290
Query 300 ATACCGGAACCAAGAGGTAACGTTGGCGAGGCTCTTGCCGTCAACGTATCAAGGACATCT 359
|||| | ||||||||||| ||| |||||||||| |||||||| |||||||||||||||||
Sbjct 291 ATACAGAAACCAAGAGGTGACGGTGGCGAGGCTATTGCCGTCGACGTATCAAGGACATCT 350
Query 360 GGAAGTAACGGTGTGGTCACCATTTCTGATTGGCTCCGCCGTGCCGGTGGCTCCTTACCT 419
||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 351 GGAAGCGACGGTGTGGTCACCGTTTCTGATTGGCTCCAACGTGCCGGTGGCTCCTTACCT 410
Query 420 ATCTTCGGCATTGAACGAAGACTTATTCGCCGGGTTGGTGCTTCTCAACATCAAAATAGA 479
||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||| |||||
Sbjct 411 GTCTCCGGCGTTGAACGAAGATTTAATCGCCGGGATGGTGCTTCTCAACATCAAGATAGA 470
Query 480 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCAGTTATCGCCTCCACGTTAA 539
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 471 CGGTTGGGTTAGGTGGAAAGTGGGCTCGTGGGTCTCTGGCGGTTATCACCTCCACGTTAA 530
Query 540 CTGTCCTGCGTTCATTACCGTCACCGGAAAGTTAACCGGCA-CCGGTCCGGCGATCAAGT 598
|||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 531 CTGTCCGGCGTTCATTACCGTCACCGGAAAGTTAGTCGG-AGCCGGTCCGGCGATCAAGT 589
Query 599 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 631
|||||||||||||||||||||||||||||||||
Sbjct 590 ACCAGCTTGTTCAGCGATGTGCTGTTGACGTAT 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23178733536
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5