BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22220.2
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489072 jgi|Araly1|489072|fgenesh2_kg.6__2206__AT5G22220.2 2555 0.0
> Ahg489072 jgi|Araly1|489072|fgenesh2_kg.6__2206__AT5G22220.2
Length=1749
Score = 2555 bits (1383), Expect = 0.0
Identities = 1664/1792 (93%), Gaps = 50/1792 (3%)
Strand=Plus/Plus
Query 13 CTTCTTCATCTTCTTCTCCTCTCCCGCtttttttCGATTCGCCGATCTCTTCACATTCTC 72
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTCTTCTTCTTCTCTCCCGCTTTTTTTCGATTCGCCGATCTCTTCACATTCTC 60
Query 73 TTCCCGGAATCTCCGTAATTCCCGCCGTAGATCTGCTTCTTAATCGTTATTGGGATCTCT 132
| ||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||
Sbjct 61 TCCCCGGAATCTCCGTAATTCTCGCCGTAGATCTGCTTCCTAATCCCTATTAGGATCTCT 120
Query 133 GCTTACCGGAGATCCGAGTTTCCGTGACAATTTTCGCCGTTTCtttttttttttggggga 192
||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||
Sbjct 121 GCTTACCGGAGATCCGAATTCCCG-GACAATTTCCGCCGTTTCTTTTTTTTTTTGGGGGA 179
Query 193 ttttttATCGAGATTCGTTCTTATGTCTGAAGAAGTACCTCAACAATTCCCATCTTCTAA 252
|||||||||||||||||||| |||||||||| | ||||| |||||| ||| |||||||
Sbjct 180 -TTTTTATCGAGATTCGTTCTCATGTCTGAAG-A--ACCTCCACAATTTCCACCTTCTAA 235
Query 253 GCGGCAGCTTCATCCTTCTCTTTCTTCTATGAAGCCTCC-TCTAGTTGCTCCTGGTGAGT 311
||||||||||||||||||||| ||||||||||| ||||| | |||||||||| || ||||
Sbjct 236 GCGGCAGCTTCATCCTTCTCTGTCTTCTATGAAACCTCCGT-TAGTTGCTCCCGGCGAGT 294
Query 312 ATCACCGGTTTGATGCGGCGGAGACTCGCGGTGGTGGAGCTGTTGCTGATCAGG-T-T-G 368
||||||||||||||||||||| || |||||||| ||||||||||| | | |
Sbjct 295 ATCACCGGTTTGATGCGGCGG-GA--------GGTGGAGC---TGCTGATCAGGTTGTCG 342
Query 369 TCTCTGACGCGATTGTGATCAAATCTACTCTGAAGCGTAAGACAGATTTGGTAAACCAAA 428
||||||| |||||||| || |||||||||||||||||||||||||||| || ||| | |
Sbjct 343 TCTCTGATGCGATTGTTATTAAATCTACTCTGAAGCGTAAGACAGATTCAGTTAACGAGA 402
Query 429 TAGTTGAGGTCAATGAATTGAATACCGGTGTTCTTCAAACACCTGTATCAGGGAAAGGGG 488
||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 403 TAGCGGAGCCCAATGAATTGAATACTGGTGTTCTTCAAACACCTGTATCAGGGAAAGGAG 462
Query 489 GGAAAGCCAAGAAAACTTCTAGGTCTGCGAAGTCTAATAAGTCTGGAACGCTAGCTTCTG 548
|||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 463 GGAAGGCCAAGAAAACTTCTAGGTCAGTGAAGTCTAATAAGTCTGGAACGCAAGCTTCTG 522
Query 549 GCTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGTACTTGTCGATATGATA 608
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 523 GTTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGGACTTGTCGATATGATA 582
Query 609 GTTCGTTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTA 668
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTTCGCTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTA 642
Query 669 TTCTTGATCTAAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGAAGGATATATGATA 728
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 643 TTCTTGATCTTAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGACGGATATATGATA 702
Query 729 TAACCAATGTGTTAGAAGGAATAGGTTTGATAGAGAAGACGCTTAAGAACAGGATTCAGT 788
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 703 TAACCAATGTGTTAGAAGGAATTGGTTTGATAGAGAAGACGCTCAAGAACAGAATTCAGT 762
Query 789 GGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAGCATAGCTAACCTACAGG 848
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 763 GGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAACATAGCTAACCTACAGG 822
Query 849 ATGAAGTACAAAACCTCGCAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCAC 908
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATGAAGTACAAAACCTCACAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCAC 882
Query 909 AAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTACTGTTCGTCACTG 968
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 883 AAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTATTGTTTGTCACTG 942
Query 969 AAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCAC 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCAC 1002
Query 1029 CGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGGT 1088
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1003 CGCATGGAACAACTCTTGAGGTGCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGAT 1062
Query 1089 ACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCG 1122
Query 1149 AAGAGAGCTTTGAGGACATTCCTCAGGCTGATGAACCTTCAAATGTTCCTGATGAACCCT 1208
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1123 AAGAGAGCTTTGAGGACATTCCTCACACTGATGAACCTTCATATGTTCCTGATGAACCTT 1182
Query 1209 CTAATGTCCCTGATGTACCTTCAAATCTTCCATCAACATCTGGTCTCCCTGAGAACCATG 1268
| || | ||||| | |||||||||||||||||||||||||||||
Sbjct 1183 C-AA--------A----CCTTC----C----ATCAACATCTGGTCTCCCTGAGAACCATG 1221
Query 1269 ATGTATCTATGCCGATGAAAGAGGAAAGCACCGAAAGAAACATGGAAACACAGGAAGTTG 1328
||||| | ||||| ||| ||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 1222 ATGTAGCAATGCCAATGGAAGAGGACAGCACCGAAAGGAACATGGAAACACAGGAACTTG 1281
Query 1329 ATGATACGCAAAGAGTTTACTCTGACATCGAATCTCATGACTTTGTCGATGGTATCATGA 1388
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1282 ATGATACGCAAAGAGTTTACTCTGATATCGAATCTCATGACTTTGTCGATGGTATCATGA 1341
Query 1389 AGATTGTTCCTCCAGATTTGGATATGGGTGTAGATTACTGGTTTCGATCAGAGGTAGGCG 1448
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1342 AGATTGTTCCTCCAGATTTGGATCTGGGTGTAGATTACTGGTTTCGATCAGAGGTCGGCG 1401
Query 1449 AAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCAGACTGGAACCAGATGATTA 1508
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1402 AAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCGGACTGGAACCAGATGATTA 1461
Query 1509 CATTTGATCAAGACCACGCTGGACCGAGCGACAACAAAATCTTGGAGCAGCCACAAACTC 1568
||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1462 CATTTGATCAAGACCACGCTGGACCGAGCGACA-CAGC--CTTGGAGCAGCCAAAAACTC 1518
Query 1569 CATCGAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTT 1628
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1519 CATCGAGCCCAACACCAGAAGATTCCACTGCTACGAGATCATCTACAGGTAGCTGAAGTT 1578
Query 1629 ACCATACCACATTACAAGCACCACCATATATCTGTACATAGA-A-TCTGATTTCGGTGAA 1686
| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1579 AGCATACCACATTACAAGTACCACCATATATCTGTACATAGAGAATCTGATTTCGGTGAA 1638
Query 1687 ACCAGAGTTAATGTTGTACTTGTACAGTAGCTGCATTGCATTATCATAGAATAGAGATTG 1746
| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1639 TCGAGAGTTCATGTTGTACTTGTACAGTAGCTGCATTGCGTTATCATAGGATAGAGATTG 1698
Query 1747 CAAAATAAAAGTAGAGAAACCAACC-CCTTCGTTGTATTCTTCAtttttttt 1797
||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1699 CAAAATAAAAGTAGAGAAACCAACCACCT-CGTTGTATTCTTCATTTTTTTT 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73590353340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5